Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Forward (+)

21316284 .. 21319490

Gene Structure 3207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028310

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGGTGCAAGTCAAAGAATGTGATCCTAACATGGAAAAGGGGGTTTTGCTTTCTTTGAGTCCTCCGGTATCGGATAGCAGTGGAGATAACACAGCTCTCAAGCCAGCCTCTGCTCAACTGAGAATGACAGGCCCTACGAGACGATCAACAAAGGGAGGCTGGACAGAGGAAGAGGATAGAATTCTAGCAGATGCTGTCGAGAAGCACAATGGCAAGAACTGGAAAAGGATTGCTGAATGTGTTCGTGGCAGAACAGATGTTCAGTGCCTTCATCGCTGGCAGAAAGTCCTCTCACCTGATCTTGTTAAAGGATTTTGGTCTAAGGAGGAAGATGATCTAATAATTGAGTTGGTCGCAAAGCAGGGGAATAAGAAATGGTCTGAAATAGCAAAGTCCTTGCCAGGCCGTATAGGCAAGCAATGTCGAGAGAGGTGGCACAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACAAATGAAGAAGAAAAGATTCTCATTGAGTCGCATAAAGCGTATGGGAACAAATGGGCTGAAATAGCAAAGCTTCTGCCTGGAAGGACAGAAAATTCAATAAAGAATCACTGGAACTGCTCAGTTAAGAAAAAATTAGAGCTACGCTCATTCCATATATCTAATATGGAAAGTCATAAAATAAAAGCAGGAGTCAGAAAGACAGAGGCGGTAAGACAAAGTCTTGATCGGATAGCCAACTTCGATAAAAATGTGGAAACCTGTTCAATTAATCTTGATCTGGTTCTTGGAACTCCTAAAGGAAGGGAGATCCAGATAAAATCTTTGGACAAAGGAAATCGCGGTTGGCTTACAAAAGGAGCTGGTGCAGATAATATGATCAAATCACCACCTAGTAACCTTTATTACGATAGAGCTGCAGCTGCATGTGGTCTAAATGTTGAACAACGGAAAGAAATTTATCATAACTATGGCAGGTTGAGAGACTCGCATTATTTATCTGCTAAACAATCAATCAAAGCTTGCAGTACTCCTTCCTGTGATCTTTGGGGTTTTCCCTATTTTCATGGAAAGAATCATAAACCCAATCACCCTATGAGTTTGTTGAATAATGGCTCAGATTCTTTTGACAACAATAGAGGTGCTGGAAATTTTCTCAAGAAACCAGATCGTCCTATTACAGTTGAGAGATTACATGAATCGTGTAAAGTGTCACAAGCTTATGAGAAAACTAAAGATGCTGGTGGAGTTGCTGAGCATTCAGAAGCTTCAAATCCTGGTTGCTTGTGCTATAGGCCACTCCAACAAGAGGATTTGGACTATTTTTTGAAAAATGGTGAATTCCCAAGCACAGATAGTTACATCCAGACAGCATTTAGTTCAGTTTCCTTATGCATTCCACCGAGCCAAGACAGAGGAATATCTGTTGATTGTAATGATCCAGATTCCGCATTGAGAAGTGCAGCAAGGACTTTTAAGAGTTCGCCATCTATCCTAAGAAAACGAAGACATCCAATTTCCAGACAAAGTCTCAACTCAGAGCATCACTATGTCATCTCAGAAGAAATTAGCAATAACTCCAGAAACAGCCTCAACATTCTAAGTCCATGTGGTGAGACAAAATTCCATTGCACGGCTCGATCAAATGCCAAAAAACTTTTCCTCTCTCCTCAAAAGTCTCAGAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

555

Amino Acids

62.43

Weight (kDa)

9.29

Isoelectric Point (pI)

58.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	51 - 97	2.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	54 - 110	6.3e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	104 - 149	1.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	106 - 163	1.5e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	155 - 197	3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	158 - 204	2.4e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	939
AccII	CGCG	1 cut(s)	816
AciI	CCGC	3 cut(s)	683, 816, 1422
AclWI	GGATC	3 cut(s)	17, 778, 1406
AcsI	RAATTY	6 cut(s)	180, 568, 930, 1123, 1313, 1595
AfaI	GTAC	1 cut(s)	1003
AfiI	CCNNNNNNNGG	2 cut(s)	1282, 1606
AgsI	TTSAA	6 cut(s)	573, 741, 917, 1081, 1245, 1303
AjnI	CCWGG	3 cut(s)	400, 553, 1249
AjuI	GAANNNNNNNTTGG	4 cut(s)	802, 834, 1616, 1648
Alw26I	GTCTC	5 cut(s)	133, 951, 1508, 1583, 1656
AlwI	GGATC	3 cut(s)	17, 778, 1406
AlwNI	CAGNNNCTG	2 cut(s)	110, 194
AoxI	GGCC	3 cut(s)	130, 403, 1268
ApeKI	GCWGC	4 cut(s)	890, 893, 896, 1436
ApoI	RAATTY	6 cut(s)	180, 568, 930, 1123, 1313, 1595
AseI	ATTAAT	1 cut(s)	744
Asp700I	GAANNNNTTC	2 cut(s)	240, 492
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	5 cut(s)	285, 852, 1055, 1322, 1598
BbsI	GAAGAC	1 cut(s)	1486
BbvI	GCAGC	4 cut(s)	877, 883, 905, 1448
BccI	CCATC	1 cut(s)	1468
BceAI	ACGGC	2 cut(s)	390, 1623
BcgI	CGANNNNNNTGC	2 cut(s)	872, 906
BciT130I	CCWGG	3 cut(s)	402, 555, 1251
BclI	TGATCA	1 cut(s)	852
BcoDI	GTCTC	5 cut(s)	133, 951, 1508, 1583, 1656
BfaI	CTAG	2 cut(s)	185, 867
BfmI	CTRYAG	2 cut(s)	891, 1264
BfuAI	ACCTGC	1 cut(s)	939
BglI	GCCNNNNNGGC	1 cut(s)	411
BisI	GCNGC	4 cut(s)	891, 894, 897, 1437
BlpI	GCTNAGC	1 cut(s)	1227
BlsI	GCNGC	4 cut(s)	892, 895, 898, 1438
BmcAI	AGTACT	1 cut(s)	1003
Bme1390I	CCNGG	3 cut(s)	402, 555, 1251
BmgT120I	GGNCC	1 cut(s)	131
BmrFI	CCNGG	3 cut(s)	402, 555, 1251
BmsI	GCATC	3 cut(s)	181, 1201, 1525
BpiI	GAAGAC	1 cut(s)	1486
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
BpmI	CTGGAG	1 cut(s)	1537
Bpu1102I	GCTNAGC	1 cut(s)	1227
BpuEI	CTTGAG	2 cut(s)	83, 1115
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	2 cut(s)	1282, 1606
Bse1I	ACTGG	2 cut(s)	224, 590
Bse3DI	GCAATG	2 cut(s)	425, 1600
BseBI	CCWGG	3 cut(s)	402, 555, 1251
BseGI	GGATG	2 cut(s)	1335, 1483
BseLI	CCNNNNNNNGG	2 cut(s)	1282, 1606
BseMI	GCAATG	2 cut(s)	425, 1600
BseMII	CTCAG	6 cut(s)	110, 609, 1104, 1218, 1524, 1545
BseNI	ACTGG	2 cut(s)	224, 590
BseRI	GAGGAG	1 cut(s)	1632
BseXI	GCAGC	4 cut(s)	877, 883, 905, 1448
BsgI	GTGCAG	2 cut(s)	861, 1455
Bsh1236I	CGCG	1 cut(s)	816
BshFI	GGCC	3 cut(s)	132, 405, 1270
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	1282, 1606
BsmAI	GTCTC	5 cut(s)	133, 951, 1508, 1583, 1656
BsmBI	CGTCTC	1 cut(s)	133
BsmI	GAATGC	2 cut(s)	1231, 1368
BsnI	GGCC	3 cut(s)	132, 405, 1270
Bsp1720I	GCTNAGC	1 cut(s)	1227
BspACI	CCGC	3 cut(s)	683, 816, 1422
BspANI	GGCC	3 cut(s)	132, 405, 1270
BspCNI	CTCAG	6 cut(s)	111, 608, 1103, 1219, 1523, 1544
BspFNI	CGCG	1 cut(s)	816
BspMAI	CTGCAG	1 cut(s)	895
BspMI	ACCTGC	1 cut(s)	939
BspPI	GGATC	3 cut(s)	17, 778, 1406
BsrDI	GCAATG	2 cut(s)	425, 1600
BsrI	ACTGG	2 cut(s)	224, 590
Bst2UI	CCWGG	3 cut(s)	402, 555, 1251
Bst4CI	ACNGT	1 cut(s)	1156
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	4 cut(s)	105, 278, 416, 997
BstF5I	GGATG	2 cut(s)	1335, 1483
BstFNI	CGCG	1 cut(s)	816
BstMAI	GTCTC	5 cut(s)	133, 951, 1508, 1583, 1656
BstMWI	GCNNNNNNNGC	4 cut(s)	273, 411, 539, 896
BstNI	CCWGG	3 cut(s)	402, 555, 1251
BstNSI	RCATGY	1 cut(s)	903
BstSCI	CCNGG	3 cut(s)	400, 553, 1249
BstSFI	CTRYAG	2 cut(s)	891, 1264
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	4 cut(s)	877, 883, 905, 1448
BstV2I	GAAGAC	1 cut(s)	1486
BstX2I	RGATCY	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	783
BsuRI	GGCC	3 cut(s)	132, 405, 1270
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	1335, 1483
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	85, 269, 583
BveI	ACCTGC	1 cut(s)	939
Cac8I	GCNNGC	4 cut(s)	105, 278, 416, 997
CaiI	CAGNNNCTG	2 cut(s)	110, 194
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	1002
CviAII	CATG	6 cut(s)	31, 471, 900, 1040, 1169, 1581
CviQI	GTAC	1 cut(s)	1002
DraI	TTTAAA	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRI	GAATTC	2 cut(s)	180, 1313
EcoRII	CCWGG	3 cut(s)	400, 553, 1249
EcoT22I	ATGCAT	1 cut(s)	1370
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	6 cut(s)	34, 474, 903, 1043, 1172, 1584
FatI	CATG	6 cut(s)	30, 470, 899, 1039, 1168, 1580
FbaI	TGATCA	1 cut(s)	852
Fnu4HI	GCNGC	4 cut(s)	891, 894, 897, 1437
FokI	GGATG	2 cut(s)	1322, 1470
Fsp4HI	GCNGC	4 cut(s)	891, 894, 897, 1437
FspBI	CTAG	2 cut(s)	185, 867
GluI	GCNGC	4 cut(s)	891, 894, 897, 1437
GsuI	CTGGAG	1 cut(s)	1537
HaeIII	GGCC	3 cut(s)	132, 405, 1270
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	6 cut(s)	34, 474, 903, 1043, 1172, 1584
HindIII	AAGCTT	5 cut(s)	545, 993, 1191, 1239, 1658
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	5 cut(s)	285, 852, 1055, 1322, 1598
Hpy188I	TCNGA	9 cut(s)	73, 382, 671, 705, 1093, 1237, 1513, 1534, 1656
HpyAV	CCTTC	4 cut(s)	278, 552, 771, 1017
HpyCH4III	ACNGT	1 cut(s)	1156
HpyCH4V	TGCA	9 cut(s)	7, 470, 842, 893, 899, 999, 1368, 1436, 1605
HpyF10VI	GCNNNNNNNGC	4 cut(s)	273, 411, 539, 896
Hsp92II	CATG	6 cut(s)	34, 474, 903, 1043, 1172, 1584
Ksp22I	TGATCA	1 cut(s)	852
LmnI	GCTCC	1 cut(s)	833
Lsp1109I	GCAGC	4 cut(s)	877, 883, 905, 1448
LweI	GCATC	3 cut(s)	181, 1201, 1525
MaeI	CTAG	2 cut(s)	185, 867
MaeIII	GTNAC	3 cut(s)	869, 1185, 1331
MboII	GAAGA	6 cut(s)	182, 341, 494, 497, 1491, 1547
MflI	RGATCY	1 cut(s)	783
MlyI	GAGTC	4 cut(s)	67, 512, 675, 953
MmeI	TCCRAC	1 cut(s)	1300
Mph1103I	ATGCAT	1 cut(s)	1370
MroXI	GAANNNNTTC	2 cut(s)	240, 492
MseI	TTAA	5 cut(s)	306, 446, 600, 744, 1449
MslI	CAYNNNNRTG	2 cut(s)	942, 1521
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	3 cut(s)	402, 555, 1251
Mva1269I	GAATGC	2 cut(s)	1231, 1368
MvaI	CCWGG	3 cut(s)	402, 555, 1251
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	4 cut(s)	273, 411, 539, 896
NlaIII	CATG	6 cut(s)	34, 474, 903, 1043, 1172, 1584
NmuCI	GTSAC	1 cut(s)	1185
NsiI	ATGCAT	1 cut(s)	1370
NspI	RCATGY	1 cut(s)	903
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PctI	GAATGC	2 cut(s)	1231, 1368
PdmI	GAANNNNTTC	2 cut(s)	240, 492
PfeI	GAWTC	6 cut(s)	493, 580, 1048, 1094, 1172, 1418
PflFI	GACNNNGTC	2 cut(s)	693, 1500
PkrI	GCNGC	4 cut(s)	892, 895, 898, 1438
PleI	GAGTC	4 cut(s)	66, 511, 674, 953
PpsI	GAGTC	4 cut(s)	66, 511, 674, 953
PshBI	ATTAAT	1 cut(s)	744
Psp6I	CCWGG	3 cut(s)	400, 553, 1249
PspGI	CCWGG	3 cut(s)	400, 553, 1249
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	895
PstNI	CAGNNNCTG	2 cut(s)	110, 194
PsuI	RGATCY	1 cut(s)	783
PsyI	GACNNNGTC	2 cut(s)	693, 1500
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	1 cut(s)	1003
RsaNI	GTAC	1 cut(s)	1002
RseI	CAYNNNNRTG	2 cut(s)	942, 1521
SaqAI	TTAA	5 cut(s)	306, 446, 600, 744, 1449
SatI	GCNGC	4 cut(s)	891, 894, 897, 1437
Sau96I	GGNCC	1 cut(s)	131
ScaI	AGTACT	1 cut(s)	1003
SchI	GAGTC	4 cut(s)	67, 512, 675, 953
ScrFI	CCNGG	3 cut(s)	402, 555, 1251
SfaNI	GCATC	3 cut(s)	181, 1201, 1525
SfcI	CTRYAG	2 cut(s)	891, 1264
SmiI	ATTTAAAT	1 cut(s)	447
SmiMI	CAYNNNNRTG	2 cut(s)	942, 1521
SmlI	CTYRAG	2 cut(s)	98, 1130
SmoI	CTYRAG	2 cut(s)	98, 1130
SsiI	CCGC	3 cut(s)	683, 816, 1422
SspMI	CTAG	2 cut(s)	185, 867
StyD4I	CCNGG	3 cut(s)	400, 553, 1249
SwaI	ATTTAAAT	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	1156
TaqI	TCGA	4 cut(s)	198, 424, 717, 1612
TatI	WGTACW	1 cut(s)	1001
TfiI	GAWTC	6 cut(s)	493, 580, 1048, 1094, 1172, 1418
Tru1I	TTAA	5 cut(s)	306, 446, 600, 744, 1449
Tru9I	TTAA	5 cut(s)	306, 446, 600, 744, 1449
TscAI	CASTG	3 cut(s)	85, 269, 590
TseFI	GTSAC	1 cut(s)	1185
TseI	GCWGC	4 cut(s)	890, 893, 896, 1436
Tsp45I	GTSAC	1 cut(s)	1185
TspDTI	ATGAA	4 cut(s)	260, 495, 1028, 1185
TspGWI	ACGGA	1 cut(s)	937
TspRI	CASTG	3 cut(s)	85, 269, 590
Tth111I	GACNNNGTC	2 cut(s)	693, 1500
VspI	ATTAAT	1 cut(s)	744
XapI	RAATTY	6 cut(s)	180, 568, 930, 1123, 1313, 1595
XceI	RCATGY	1 cut(s)	903
XmnI	GAANNNNTTC	2 cut(s)	240, 492
XspI	CTAG	2 cut(s)	185, 867
ZrmI	AGTACT	1 cut(s)	1003
Zsp2I	ATGCAT	1 cut(s)	1370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.