Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018708.1

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Forward (+)

16059 .. 16552

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018708.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

atgatcttatcatcttgtttacaagacagaattctagtagatgctgttgagaagtacaatggcaaaaactggaaaaggatcgttgaatgtgttcgtggcagaacagatgttcagtgccttcacctccggcagaaactcatctcacttgatcttgttaaaggattttggtataaagaggaagatgatctaataattaagttagttgcaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

70

Amino Acids

8.25

Weight (kDa)

8.88

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	30
AfaI	GTAC	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	86
AlwI	GGATC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	113
BfaI	CTAG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	3, 78, 148, 184
BspPI	GGATC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	74
BssMI	GATC	4 cut(s)	3, 78, 148, 184
BstKTI	GATC	4 cut(s)	6, 81, 151, 187
BstMBI	GATC	4 cut(s)	3, 78, 148, 184
BtsIMutI	CAGTG	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	55
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	4 cut(s)	5, 80, 150, 186
DpnII	GATC	4 cut(s)	3, 78, 148, 184
EcoRI	GAATTC	1 cut(s)	30
FaiI	YATR	1 cut(s)	171
FspBI	CTAG	1 cut(s)	35
HapII	CCGG	1 cut(s)	127
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	128
HpyCH4V	TGCA	1 cut(s)	206
Kzo9I	GATC	4 cut(s)	3, 78, 148, 184
LpnPI	CCDG	2 cut(s)	55, 140
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	35
MalI	GATC	4 cut(s)	5, 80, 150, 186
MboI	GATC	4 cut(s)	3, 78, 148, 184
MboII	GAAGA	1 cut(s)	191
MluCI	AATT	2 cut(s)	30, 192
MnlI	CCTC	2 cut(s)	134, 169
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	2 cut(s)	156, 195
MspI	CCGG	1 cut(s)	127
NdeII	GATC	4 cut(s)	3, 78, 148, 184
PdmI	GAANNNNTTC	1 cut(s)	90
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	156, 195
Sau3AI	GATC	4 cut(s)	3, 78, 148, 184
SetI	ASST	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	31
SgeI	CNNG	8 cut(s)	27, 35, 47, 82, 107, 139, 158, 164
Sse9I	AATT	2 cut(s)	30, 192
SspMI	CTAG	1 cut(s)	35
TasI	AATT	2 cut(s)	30, 192
TatI	WGTACW	1 cut(s)	54
Tru1I	TTAA	2 cut(s)	156, 195
Tru9I	TTAA	2 cut(s)	156, 195
TscAI	CASTG	1 cut(s)	119
TspRI	CASTG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.