Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Reverse (-)

33637332 .. 33640531

Gene Structure 3200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG215900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGGTGCAAGTCAAAGAATGTGATCCTAACATGGAAAAGGGGGTTTTGCTTTCTTTGAGTCCTCCAGTATCGGATAGCAGTGGAGATAACACAGCTCTCAAGCCAGCTGCCTCTGCTCAACTGAGAATGACAGGCCCTACGAGACGATCAACAAAGGGAGGCTGGACAGAGGAAGAGGATAGAATTCTAGCAGATGCTGTCGAGAAGCACAATGGCAAGAACTGGAAAAGGATTGCTGAATGTGTTCGTGGCAGAACAGATGTTCAGTGCCTTCATCGCTGGCAGAAAGTCCTCTCACCTGATCTTGTTAAAGGATTTTGGTCTAAGGAGGAAGATGATCTAATAATTGAGTTGGTCGCAAAGCAGGGGAATAAGAAATGGTCTGAAATAGCAAAGTCCTTGCCAGGCCGTATAGGCAAGCAATGTCGAGAGAGGTGGCACAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACAAATGAAGAAGAAAAGATTCTCATTGAATCGCATAAAGCCTATGGGAACAAATGGGCTGAAATAGCAAAGCTTCTGCCTGGAAGGACAGAAAATTCAATAAAGAACCACTGGAACTGCTCAGTTAAGAAAAAATTAGAGCTACGCTCATTCCATATATCTAATATGGAAAGTCATAAAATAAAAGCAGGAGTCAGAAAGACAGAGGCGGTAAGACAAAGTCTTGATTGGATAGCCAACTTCGATAAAAATGTGGAAACCTGTTCAATTAATCTTGATCTGGTTCTTGGAACTCCTAACGGAAGGGAGATCCAGATAAAATCTTTGGACAAAGGAAATCGCGGTTGGCTTACAAAAGGAGCTGGTGCAGATAATATGATCAAATCACCACCTAGTAACCTTTATTACGATAGAGCTGCAGCTGCATATGGTCTAAATGTTGAACAACGGAAAGAAATTTATCATAACTATGGCAGGTTGAGAGACTCGCATTATTTATCTGCTAAACAATCAATCAAAGCTTGCACTACTCCTTCCTGTGATCTTTGGGGTTTTCCCTATTTTCATGGAAAGAATCATAAACCCAATCACCCTATGAGTTTGTTGAATAATGGCCCAGATTCTTTTGACTACAATAGAGGAGCTGGAAATTTTCTCAAGAAACCAGATCGTCCTATTACAGTTGAGAGATTACATGAATCTTGTAAAGTATCACAAGCTTATGAGGAAACTAAAGATGCTGGTGGAGCTACTGAGCATTCAGAGGCTTCCCCTGGTTGCTTGTGCTATAGGCCACTCCAACAAGAGGATTTGGACTATTTTTTTAAAAATGGTGAATTCCCAAGCACAGATAGTTACATCCAGACAGCATTTAGTTCAGTTTCCTTATGCACTCCACCGAGCCAAGACAGAGGAATATCTGTTGATTGTAATGATCCAGATTCCGCATTGAGAAGTGCAGCAAGAACTTTTAAGAGTTCGCCATCTATCCTAAGAAAACGAAGACATCCAATTTCCAGACAAAGTCTCAACTCAGAGCATCACTATGTCATCTCAGAAGAAATTAGCAATAATTCCAGAAACAGCCTCAACATTCTAAGTCCATGTGGTGAGACAAAATTCCATTGCATGGCTCGATCAAATGTCAAAAAACTTTTCCTCTCTCCTCAAAAGTCTCAGAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

554

Amino Acids

62.62

Weight (kDa)

9.17

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	52 - 98	2.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	55 - 111	6.3e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	105 - 150	1.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	107 - 164	1.5e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	156 - 198	3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	159 - 205	2.4e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	942
AccB7I	CCANNNNNTGG	1 cut(s)	1606
AccII	CGCG	1 cut(s)	819
AciI	CCGC	3 cut(s)	686, 819, 1422
AclWI	GGATC	3 cut(s)	17, 781, 1406
AcsI	RAATTY	6 cut(s)	183, 571, 933, 1126, 1313, 1595
AfiI	CCNNNNNNNGG	2 cut(s)	1282, 1606
AgsI	TTSAA	5 cut(s)	506, 576, 744, 920, 1084
AjnI	CCWGG	3 cut(s)	403, 556, 1249
AjuI	GAANNNNNNNTTGG	2 cut(s)	805, 837
Alw26I	GTCTC	5 cut(s)	136, 954, 1508, 1583, 1656
AlwI	GGATC	3 cut(s)	17, 781, 1406
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	4 cut(s)	133, 406, 1090, 1268
ApeKI	GCWGC	5 cut(s)	107, 893, 896, 899, 1436
ApoI	RAATTY	6 cut(s)	183, 571, 933, 1126, 1313, 1595
AseI	ATTAAT	1 cut(s)	747
Asp700I	GAANNNNTTC	2 cut(s)	243, 495
AspS9I	GGNCC	2 cut(s)	134, 1091
AsuHPI	GGTGA	5 cut(s)	288, 855, 1058, 1322, 1598
BbsI	GAAGAC	1 cut(s)	1486
BbvI	GCAGC	5 cut(s)	94, 880, 886, 908, 1448
BccI	CCATC	1 cut(s)	1468
BceAI	ACGGC	1 cut(s)	393
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	3 cut(s)	405, 558, 1251
BclI	TGATCA	1 cut(s)	855
BcoDI	GTCTC	5 cut(s)	136, 954, 1508, 1583, 1656
BfaI	CTAG	2 cut(s)	188, 870
BfmI	CTRYAG	2 cut(s)	894, 1264
BfuAI	ACCTGC	1 cut(s)	942
BglI	GCCNNNNNGGC	1 cut(s)	414
BisI	GCNGC	5 cut(s)	108, 894, 897, 900, 1437
BlsI	GCNGC	5 cut(s)	109, 895, 898, 901, 1438
Bme1390I	CCNGG	3 cut(s)	405, 558, 1251
BmgT120I	GGNCC	2 cut(s)	134, 1091
BmrFI	CCNGG	3 cut(s)	405, 558, 1251
BmsI	GCATC	3 cut(s)	184, 1204, 1525
BpiI	GAAGAC	1 cut(s)	1486
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	83, 1118
BsaJI	CCNNGG	1 cut(s)	1249
Bsc4I	CCNNNNNNNGG	2 cut(s)	1282, 1606
Bse1I	ACTGG	3 cut(s)	65, 227, 593
Bse3DI	GCAATG	2 cut(s)	428, 1600
BseBI	CCWGG	3 cut(s)	405, 558, 1251
BseDI	CCNNGG	1 cut(s)	1249
BseGI	GGATG	2 cut(s)	1335, 1483
BseLI	CCNNNNNNNGG	2 cut(s)	1282, 1606
BseMI	GCAATG	2 cut(s)	428, 1600
BseMII	CTCAG	5 cut(s)	113, 612, 1221, 1524, 1545
BseNI	ACTGG	3 cut(s)	65, 227, 593
BseRI	GAGGAG	2 cut(s)	1131, 1632
BseXI	GCAGC	5 cut(s)	94, 880, 886, 908, 1448
BsgI	GTGCAG	2 cut(s)	864, 1455
Bsh1236I	CGCG	1 cut(s)	819
BshFI	GGCC	4 cut(s)	135, 408, 1092, 1270
BslI	CCNNNNNNNGG	2 cut(s)	1282, 1606
BsmAI	GTCTC	5 cut(s)	136, 954, 1508, 1583, 1656
BsmBI	CGTCTC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	1234
BsnI	GGCC	4 cut(s)	135, 408, 1092, 1270
BspACI	CCGC	3 cut(s)	686, 819, 1422
BspANI	GGCC	4 cut(s)	135, 408, 1092, 1270
BspCNI	CTCAG	5 cut(s)	114, 611, 1222, 1523, 1544
BspFNI	CGCG	1 cut(s)	819
BspMAI	CTGCAG	1 cut(s)	898
BspMI	ACCTGC	1 cut(s)	942
BspPI	GGATC	3 cut(s)	17, 781, 1406
BsrDI	GCAATG	2 cut(s)	428, 1600
BsrI	ACTGG	3 cut(s)	65, 227, 593
BssECI	CCNNGG	1 cut(s)	1249
Bst2UI	CCWGG	3 cut(s)	405, 558, 1251
Bst4CI	ACNGT	1 cut(s)	1159
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	4 cut(s)	105, 281, 419, 1000
BstDEI	CTNAG	9 cut(s)	122, 324, 598, 1230, 1469, 1510, 1531, 1574, 1653
BstF5I	GGATG	2 cut(s)	1335, 1483
BstFNI	CGCG	1 cut(s)	819
BstMAI	GTCTC	5 cut(s)	136, 954, 1508, 1583, 1656
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 276, 414, 542, 899, 1223
BstNI	CCWGG	3 cut(s)	405, 558, 1251
BstSCI	CCNGG	3 cut(s)	403, 556, 1249
BstSFI	CTRYAG	2 cut(s)	894, 1264
BstUI	CGCG	1 cut(s)	819
BstV1I	GCAGC	5 cut(s)	94, 880, 886, 908, 1448
BstV2I	GAAGAC	1 cut(s)	1486
BstX2I	RGATCY	1 cut(s)	786
BstYI	RGATCY	1 cut(s)	786
BsuRI	GGCC	4 cut(s)	135, 408, 1092, 1270
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	1335, 1483
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	85, 272, 586
BveI	ACCTGC	1 cut(s)	942
Cac8I	GCNNGC	4 cut(s)	105, 281, 419, 1000
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	134, 1091
CviAII	CATG	6 cut(s)	31, 474, 1043, 1172, 1581, 1606
DdeI	CTNAG	9 cut(s)	122, 324, 598, 1230, 1469, 1510, 1531, 1574, 1653
DraI	TTTAAA	2 cut(s)	450, 1303
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRI	GAATTC	2 cut(s)	183, 1313
EcoRII	CCWGG	3 cut(s)	403, 556, 1249
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	6 cut(s)	34, 477, 1046, 1175, 1584, 1609
FatI	CATG	6 cut(s)	30, 473, 1042, 1171, 1580, 1605
FauNDI	CATATG	1 cut(s)	904
FbaI	TGATCA	1 cut(s)	855
Fnu4HI	GCNGC	5 cut(s)	108, 894, 897, 900, 1437
FokI	GGATG	2 cut(s)	1322, 1470
Fsp4HI	GCNGC	5 cut(s)	108, 894, 897, 900, 1437
FspBI	CTAG	2 cut(s)	188, 870
GluI	GCNGC	5 cut(s)	108, 894, 897, 900, 1437
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	4 cut(s)	135, 408, 1092, 1270
Hin1II	CATG	6 cut(s)	34, 477, 1046, 1175, 1584, 1609
HindIII	AAGCTT	4 cut(s)	548, 996, 1194, 1658
HinfI	GANTC	9 cut(s)	58, 496, 506, 669, 962, 1051, 1097, 1175, 1418
HphI	GGTGA	5 cut(s)	288, 855, 1058, 1322, 1598
Hpy188I	TCNGA	7 cut(s)	73, 385, 674, 1240, 1513, 1534, 1656
HpyAV	CCTTC	4 cut(s)	281, 555, 774, 1020
HpyCH4III	ACNGT	1 cut(s)	1159
HpyCH4V	TGCA	9 cut(s)	7, 473, 845, 896, 902, 1002, 1368, 1436, 1605
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 276, 414, 542, 899, 1223
HpyF3I	CTNAG	9 cut(s)	122, 324, 598, 1230, 1469, 1510, 1531, 1574, 1653
Hsp92II	CATG	6 cut(s)	34, 477, 1046, 1175, 1584, 1609
Ksp22I	TGATCA	1 cut(s)	855
LmnI	GCTCC	3 cut(s)	836, 1118, 1223
Lsp1109I	GCAGC	5 cut(s)	94, 880, 886, 908, 1448
LweI	GCATC	3 cut(s)	184, 1204, 1525
MaeI	CTAG	2 cut(s)	188, 870
MaeIII	GTNAC	2 cut(s)	872, 1331
MboII	GAAGA	6 cut(s)	185, 344, 497, 500, 1491, 1547
MflI	RGATCY	1 cut(s)	786
MlyI	GAGTC	3 cut(s)	67, 678, 956
MmeI	TCCRAC	1 cut(s)	1300
MroXI	GAANNNNTTC	2 cut(s)	243, 495
MseI	TTAA	6 cut(s)	309, 449, 603, 747, 1302, 1449
MslI	CAYNNNNRTG	2 cut(s)	945, 1521
MspA1I	CMGCKG	2 cut(s)	107, 899
MspR9I	CCNGG	3 cut(s)	405, 558, 1251
Mva1269I	GAATGC	1 cut(s)	1234
MvaI	CCWGG	3 cut(s)	405, 558, 1251
MvnI	CGCG	1 cut(s)	819
MwoI	GCNNNNNNNGC	6 cut(s)	113, 276, 414, 542, 899, 1223
NdeI	CATATG	1 cut(s)	904
NlaIII	CATG	6 cut(s)	34, 477, 1046, 1175, 1584, 1609
PctI	GAATGC	1 cut(s)	1234
PdmI	GAANNNNTTC	2 cut(s)	243, 495
PfeI	GAWTC	6 cut(s)	496, 506, 1051, 1097, 1175, 1418
PflFI	GACNNNGTC	2 cut(s)	696, 1500
PflMI	CCANNNNNTGG	1 cut(s)	1606
PkrI	GCNGC	5 cut(s)	109, 895, 898, 901, 1438
PleI	GAGTC	3 cut(s)	66, 677, 956
PpsI	GAGTC	3 cut(s)	66, 677, 956
PshBI	ATTAAT	1 cut(s)	747
Psp6I	CCWGG	3 cut(s)	403, 556, 1249
PspGI	CCWGG	3 cut(s)	403, 556, 1249
PspPI	GGNCC	2 cut(s)	134, 1091
PstI	CTGCAG	1 cut(s)	898
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	786
PsyI	GACNNNGTC	2 cut(s)	696, 1500
PvuII	CAGCTG	2 cut(s)	107, 899
RseI	CAYNNNNRTG	2 cut(s)	945, 1521
SaqAI	TTAA	6 cut(s)	309, 449, 603, 747, 1302, 1449
SatI	GCNGC	5 cut(s)	108, 894, 897, 900, 1437
Sau96I	GGNCC	2 cut(s)	134, 1091
SchI	GAGTC	3 cut(s)	67, 678, 956
ScrFI	CCNGG	3 cut(s)	405, 558, 1251
SfaNI	GCATC	3 cut(s)	184, 1204, 1525
SfcI	CTRYAG	2 cut(s)	894, 1264
SmiI	ATTTAAAT	1 cut(s)	450
SmiMI	CAYNNNNRTG	2 cut(s)	945, 1521
SmlI	CTYRAG	2 cut(s)	98, 1133
SmoI	CTYRAG	2 cut(s)	98, 1133
SsiI	CCGC	3 cut(s)	686, 819, 1422
SspMI	CTAG	2 cut(s)	188, 870
StyD4I	CCNGG	3 cut(s)	403, 556, 1249
SwaI	ATTTAAAT	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	1159
TaqI	TCGA	4 cut(s)	201, 427, 720, 1612
TfiI	GAWTC	6 cut(s)	496, 506, 1051, 1097, 1175, 1418
Tru1I	TTAA	6 cut(s)	309, 449, 603, 747, 1302, 1449
Tru9I	TTAA	6 cut(s)	309, 449, 603, 747, 1302, 1449
TscAI	CASTG	3 cut(s)	85, 272, 593
TseI	GCWGC	5 cut(s)	107, 893, 896, 899, 1436
TspDTI	ATGAA	4 cut(s)	263, 498, 1031, 1188
TspGWI	ACGGA	2 cut(s)	792, 940
TspRI	CASTG	3 cut(s)	85, 272, 593
Tth111I	GACNNNGTC	2 cut(s)	696, 1500
Van91I	CCANNNNNTGG	1 cut(s)	1606
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	6 cut(s)	183, 571, 933, 1126, 1313, 1595
XmnI	GAANNNNTTC	2 cut(s)	243, 495
XspI	CTAG	2 cut(s)	188, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.