SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G43330 AT4G00540 AT4G00540 |
| fragaria_vesca | FvH4_7g13470 |
| prunus_persica | Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0352951 |
| rosa_laevigata | RLG00000028303 RLG00000028310 |
| rosa_multiflora | Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00302230 |
| rosa_rugosa | Rorug01G0232300 Rorug01G0232600 |
| rosa_samantha | Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200 |
| rosa_wichuraiana | Rw0G014870 Rw0G014900 Rw1G020030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 134, 811 |
| AciI | CCGC | 2 cut(s) | 603, 811 |
| AclWI | GGATC | 1 cut(s) | 824 |
| AcoI | YGGCCR | 1 cut(s) | 1521 |
| AcsI | RAATTY | 6 cut(s) | 346, 1033, 1042, 1094, 1115, 1194 |
| AcuI | CTGAAG | 1 cut(s) | 1345 |
| AfaI | GTAC | 1 cut(s) | 1126 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 532, 1084, 1536 |
| AgsI | TTSAA | 5 cut(s) | 351, 683, 1038, 1047, 1511 |
| AjnI | CCWGG | 2 cut(s) | 178, 904 |
| AluBI | AGCT | 8 cut(s) | 11, 127, 488, 656, 662, 923, 998, 1025 |
| AluI | AGCT | 8 cut(s) | 11, 127, 488, 656, 662, 923, 998, 1025 |
| Alw21I | GWGCWC | 1 cut(s) | 1027 |
| Alw26I | GTCTC | 2 cut(s) | 408, 1446 |
| AlwI | GGATC | 1 cut(s) | 824 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 959 |
| Ama87I | CYCGRG | 1 cut(s) | 1082 |
| AoxI | GGCC | 5 cut(s) | 282, 472, 600, 1070, 1521 |
| ApeKI | GCWGC | 7 cut(s) | 8, 605, 656, 659, 662, 1238, 1313 |
| ApoI | RAATTY | 6 cut(s) | 346, 1033, 1042, 1094, 1115, 1194 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 18 |
| AspLEI | GCGC | 1 cut(s) | 1529 |
| AspS9I | GGNCC | 7 cut(s) | 96, 252, 283, 523, 600, 989, 1539 |
| AsuHPI | GGTGA | 2 cut(s) | 1124, 1337 |
| AvaI | CYCGRG | 1 cut(s) | 1082 |
| AvaII | GGWCC | 5 cut(s) | 96, 252, 523, 989, 1539 |
| BaeGI | GKGCMC | 1 cut(s) | 425 |
| BanII | GRGCYC | 1 cut(s) | 1027 |
| Bbv12I | GWGCWC | 1 cut(s) | 1027 |
| BbvI | GCAGC | 7 cut(s) | 20, 592, 643, 649, 671, 1250, 1325 |
| BccI | CCATC | 3 cut(s) | 1006, 1010, 1270 |
| BceAI | ACGGC | 2 cut(s) | 1298, 1514 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 638, 672 |
| BciT130I | CCWGG | 2 cut(s) | 180, 906 |
| BclI | TGATCA | 1 cut(s) | 478 |
| BcoDI | GTCTC | 2 cut(s) | 408, 1446 |
| BfaI | CTAG | 6 cut(s) | 633, 702, 864, 984, 1382, 1536 |
| BfmI | CTRYAG | 3 cut(s) | 657, 1066, 1476 |
| BfoI | RGCGCY | 1 cut(s) | 1530 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1056 |
| BisI | GCNGC | 8 cut(s) | 9, 603, 606, 657, 660, 663, 1239, 1314 |
| BlsI | GCNGC | 8 cut(s) | 10, 604, 607, 658, 661, 664, 1240, 1315 |
| Bme1390I | CCNGG | 2 cut(s) | 180, 906 |
| Bme18I | GGWCC | 5 cut(s) | 96, 252, 523, 989, 1539 |
| BmeT110I | CYCGRG | 1 cut(s) | 1082 |
| BmgT120I | GGNCC | 7 cut(s) | 96, 252, 283, 523, 600, 989, 1539 |
| BmiI | GGNNCC | 1 cut(s) | 815 |
| BmrFI | CCNGG | 2 cut(s) | 180, 906 |
| BmrI | ACTGGG | 2 cut(s) | 819, 947 |
| BmuI | ACTGGG | 2 cut(s) | 819, 947 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 712, 744 |
| Bpu10I | CCTNAGC | 2 cut(s) | 895, 963 |
| BpuEI | CTTGAG | 1 cut(s) | 978 |
| BsaI | GGTCTC | 1 cut(s) | 1446 |
| BsaJI | CCNNGG | 3 cut(s) | 99, 1051, 1436 |
| BsaXI | ACNNNNNCTCC | 5 cut(s) | 933, 963, 1014, 1044, 1531 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 532, 1084, 1536 |
| Bse1I | ACTGG | 5 cut(s) | 525, 825, 944, 953, 1413 |
| Bse3DI | GCAATG | 1 cut(s) | 203 |
| BseBI | CCWGG | 2 cut(s) | 180, 906 |
| BseDI | CCNNGG | 3 cut(s) | 99, 1051, 1436 |
| BseGI | GGATG | 3 cut(s) | 1021, 1093, 1137 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 532, 1084, 1536 |
| BseMI | GCAATG | 1 cut(s) | 203 |
| BseMII | CTCAG | 4 cut(s) | 387, 710, 977, 1457 |
| BseNI | ACTGG | 5 cut(s) | 525, 825, 944, 953, 1413 |
| BseRI | GAGGAG | 2 cut(s) | 361, 1422 |
| BseSI | GKGCMC | 1 cut(s) | 425 |
| BseXI | GCAGC | 7 cut(s) | 20, 592, 643, 649, 671, 1250, 1325 |
| BsgI | GTGCAG | 1 cut(s) | 1257 |
| Bsh1236I | CGCG | 2 cut(s) | 134, 811 |
| BshFI | GGCC | 5 cut(s) | 284, 474, 602, 1072, 1523 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1027 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1082 |
| BslFI | GGGAC | 1 cut(s) | 737 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 532, 1084, 1536 |
| BsmAI | GTCTC | 2 cut(s) | 408, 1446 |
| BsmBI | CGTCTC | 1 cut(s) | 408 |
| BsmFI | GGGAC | 1 cut(s) | 737 |
| BsmI | GAATGC | 2 cut(s) | 449, 1285 |
| BsnI | GGCC | 5 cut(s) | 284, 474, 602, 1072, 1523 |
| Bso31I | GGTCTC | 1 cut(s) | 1446 |
| BsoBI | CYCGRG | 1 cut(s) | 1082 |
| Bsp1286I | GDGCHC | 2 cut(s) | 425, 1027 |
| Bsp143I | GATC | 4 cut(s) | 76, 112, 478, 829 |
| Bsp19I | CCATGG | 1 cut(s) | 1051 |
| Bsp68I | TCGCGA | 1 cut(s) | 134 |
| BspACI | CCGC | 2 cut(s) | 603, 811 |
| BspANI | GGCC | 5 cut(s) | 284, 474, 602, 1072, 1523 |
| BspCNI | CTCAG | 4 cut(s) | 386, 711, 976, 1456 |
| BspFNI | CGCG | 2 cut(s) | 134, 811 |
| BspHI | TCATGA | 1 cut(s) | 1467 |
| BspLI | GGNNCC | 1 cut(s) | 815 |
| BspMAI | CTGCAG | 1 cut(s) | 661 |
| BspPI | GGATC | 1 cut(s) | 824 |
| BspTNI | GGTCTC | 1 cut(s) | 1446 |
| BsrDI | GCAATG | 1 cut(s) | 203 |
| BsrI | ACTGG | 5 cut(s) | 525, 825, 944, 953, 1413 |
| BssECI | CCNNGG | 3 cut(s) | 99, 1051, 1436 |
| BssMI | GATC | 4 cut(s) | 76, 112, 478, 829 |
| BssT1I | CCWWGG | 3 cut(s) | 99, 1051, 1436 |
| Bst2UI | CCWGG | 2 cut(s) | 180, 906 |
| Bst4CI | ACNGT | 4 cut(s) | 640, 710, 1214, 1331 |
| BstC8I | GCNNGC | 4 cut(s) | 56, 194, 892, 1525 |
| BstDEI | CTNAG | 6 cut(s) | 373, 719, 895, 963, 1388, 1443 |
| BstDSI | CCRYGG | 1 cut(s) | 1051 |
| BstF5I | GGATG | 3 cut(s) | 1021, 1093, 1137 |
| BstFNI | CGCG | 2 cut(s) | 134, 811 |
| BstH2I | RGCGCY | 1 cut(s) | 1530 |
| BstHHI | GCGC | 1 cut(s) | 1529 |
| BstKTI | GATC | 4 cut(s) | 79, 115, 481, 832 |
| BstMAI | GTCTC | 2 cut(s) | 408, 1446 |
| BstMBI | GATC | 4 cut(s) | 76, 112, 478, 829 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 51, 317, 662, 1056 |
| BstNI | CCWGG | 2 cut(s) | 180, 906 |
| BstNSI | RCATGY | 2 cut(s) | 669, 1499 |
| BstSCI | CCNGG | 2 cut(s) | 178, 904 |
| BstSFI | CTRYAG | 3 cut(s) | 657, 1066, 1476 |
| BstSLI | GKGCMC | 1 cut(s) | 425 |
| BstUI | CGCG | 2 cut(s) | 134, 811 |
| BstV1I | GCAGC | 7 cut(s) | 20, 592, 643, 649, 671, 1250, 1325 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1420 |
| BsuRI | GGCC | 5 cut(s) | 284, 474, 602, 1072, 1523 |
| BtgI | CCRYGG | 1 cut(s) | 1051 |
| BtgZI | GCGATG | 1 cut(s) | 35 |
| BtsCI | GGATG | 3 cut(s) | 1021, 1093, 1137 |
| BtsIMutI | CAGTG | 5 cut(s) | 47, 381, 518, 832, 1336 |
| BtuMI | TCGCGA | 1 cut(s) | 134 |
| Cac8I | GCNNGC | 4 cut(s) | 56, 194, 892, 1525 |
| CaiI | CAGNNNCTG | 1 cut(s) | 959 |
| CciI | TCATGA | 1 cut(s) | 1467 |
| CfoI | GCGC | 1 cut(s) | 1529 |
| Cfr13I | GGNCC | 7 cut(s) | 96, 252, 283, 523, 600, 989, 1539 |
| Csp6I | GTAC | 1 cut(s) | 1125 |
| CviQI | GTAC | 1 cut(s) | 1125 |
| DdeI | CTNAG | 6 cut(s) | 373, 719, 895, 963, 1388, 1443 |
| DpnI | GATC | 4 cut(s) | 78, 114, 480, 831 |
| DpnII | GATC | 4 cut(s) | 76, 112, 478, 829 |
| DraI | TTTAAA | 2 cut(s) | 225, 885 |
| EaeI | YGGCCR | 1 cut(s) | 1521 |
| Ecl136II | GAGCTC | 1 cut(s) | 1025 |
| Eco130I | CCWWGG | 3 cut(s) | 99, 1051, 1436 |
| Eco147I | AGGCCT | 1 cut(s) | 474 |
| Eco24I | GRGCYC | 1 cut(s) | 1027 |
| Eco31I | GGTCTC | 1 cut(s) | 1446 |
| Eco47I | GGWCC | 5 cut(s) | 96, 252, 523, 989, 1539 |
| Eco53kI | GAGCTC | 1 cut(s) | 1025 |
| Eco57I | CTGAAG | 1 cut(s) | 1345 |
| Eco88I | CYCGRG | 1 cut(s) | 1082 |
| EcoICRI | GAGCTC | 1 cut(s) | 1025 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1539 |
| EcoRI | GAATTC | 3 cut(s) | 1033, 1042, 1115 |
| EcoRII | CCWGG | 2 cut(s) | 178, 904 |
| EcoT14I | CCWWGG | 3 cut(s) | 99, 1051, 1436 |
| EcoT22I | ATGCAT | 1 cut(s) | 1501 |
| EcoT38I | GRGCYC | 1 cut(s) | 1027 |
| ErhI | CCWWGG | 3 cut(s) | 99, 1051, 1436 |
| Esp3I | CGTCTC | 1 cut(s) | 408 |
| FaqI | GGGAC | 1 cut(s) | 737 |
| FbaI | TGATCA | 1 cut(s) | 478 |
| Fnu4HI | GCNGC | 8 cut(s) | 9, 603, 606, 657, 660, 663, 1239, 1314 |
| FokI | GGATG | 3 cut(s) | 1028, 1100, 1124 |
| FriOI | GRGCYC | 1 cut(s) | 1027 |
| Fsp4HI | GCNGC | 8 cut(s) | 9, 603, 606, 657, 660, 663, 1239, 1314 |
| FspBI | CTAG | 6 cut(s) | 633, 702, 864, 984, 1382, 1536 |
| GlaI | GCGC | 1 cut(s) | 1528 |
| GluI | GCNGC | 8 cut(s) | 9, 603, 606, 657, 660, 663, 1239, 1314 |
| HaeII | RGCGCY | 1 cut(s) | 1530 |
| HaeIII | GGCC | 5 cut(s) | 284, 474, 602, 1072, 1523 |
| HhaI | GCGC | 1 cut(s) | 1529 |
| Hin6I | GCGC | 1 cut(s) | 1527 |
| HinP1I | GCGC | 1 cut(s) | 1527 |
| HindIII | AAGCTT | 1 cut(s) | 996 |
| HinfI | GANTC | 7 cut(s) | 271, 529, 725, 977, 1220, 1457, 1517 |
| HphI | GGTGA | 2 cut(s) | 1124, 1337 |
| Hpy166II | GTNNAC | 2 cut(s) | 518, 989 |
| Hpy188I | TCNGA | 7 cut(s) | 160, 415, 483, 542, 580, 1364, 1446 |
| Hpy8I | GTNNAC | 2 cut(s) | 518, 989 |
| Hpy99I | CGWCG | 1 cut(s) | 1284 |
| HpyAV | CCTTC | 4 cut(s) | 56, 330, 549, 858 |
| HpyCH4III | ACNGT | 4 cut(s) | 640, 710, 1214, 1331 |
| HpyCH4IV | ACGT | 1 cut(s) | 1247 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 51, 317, 662, 1056 |
| HpyF3I | CTNAG | 6 cut(s) | 373, 719, 895, 963, 1388, 1443 |
| HpySE526I | ACGT | 1 cut(s) | 1247 |
| HspAI | GCGC | 1 cut(s) | 1527 |
| Ksp22I | TGATCA | 1 cut(s) | 478 |
| Kzo9I | GATC | 4 cut(s) | 76, 112, 478, 829 |
| LmnI | GCTCC | 4 cut(s) | 339, 781, 1022, 1030 |
| Lsp1109I | GCAGC | 7 cut(s) | 20, 592, 643, 649, 671, 1250, 1325 |
| MaeI | CTAG | 6 cut(s) | 633, 702, 864, 984, 1382, 1536 |
| MaeII | ACGT | 1 cut(s) | 1247 |
| MaeIII | GTNAC | 8 cut(s) | 704, 736, 752, 955, 1133, 1181, 1208, 1325 |
| MalI | GATC | 4 cut(s) | 78, 114, 480, 831 |
| MboI | GATC | 4 cut(s) | 76, 112, 478, 829 |
| MboII | GAAGA | 4 cut(s) | 119, 391, 394, 567 |
| MhlI | GDGCHC | 2 cut(s) | 425, 1027 |
| MlyI | GAGTC | 2 cut(s) | 265, 719 |
| MmeI | TCCRAC | 2 cut(s) | 1102, 1199 |
| Mph1103I | ATGCAT | 1 cut(s) | 1501 |
| MroXI | GAANNNNTTC | 1 cut(s) | 18 |
| MseI | TTAA | 5 cut(s) | 84, 224, 330, 354, 884 |
| MspA1I | CMGCKG | 4 cut(s) | 11, 605, 662, 923 |
| MspR9I | CCNGG | 2 cut(s) | 180, 906 |
| Mva1269I | GAATGC | 2 cut(s) | 449, 1285 |
| MvaI | CCWGG | 2 cut(s) | 180, 906 |
| MvnI | CGCG | 2 cut(s) | 134, 811 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 51, 317, 662, 1056 |
| NcoI | CCATGG | 1 cut(s) | 1051 |
| NdeII | GATC | 4 cut(s) | 76, 112, 478, 829 |
| NlaIV | GGNNCC | 1 cut(s) | 815 |
| NmuCI | GTSAC | 3 cut(s) | 736, 1181, 1325 |
| NruI | TCGCGA | 1 cut(s) | 134 |
| NsiI | ATGCAT | 1 cut(s) | 1501 |
| NspI | RCATGY | 2 cut(s) | 669, 1499 |
| PaeR7I | CTCGAG | 1 cut(s) | 1082 |
| PagI | TCATGA | 1 cut(s) | 1467 |
| PceI | AGGCCT | 1 cut(s) | 474 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 339 |
| PctI | GAATGC | 2 cut(s) | 449, 1285 |
| PdmI | GAANNNNTTC | 1 cut(s) | 18 |
| PfeI | GAWTC | 5 cut(s) | 529, 977, 1220, 1457, 1517 |
| PkrI | GCNGC | 8 cut(s) | 10, 604, 607, 658, 661, 664, 1240, 1315 |
| PleI | GAGTC | 2 cut(s) | 265, 719 |
| PpsI | GAGTC | 2 cut(s) | 265, 719 |
| PpuMI | RGGWCCY | 1 cut(s) | 1539 |
| Psp124BI | GAGCTC | 1 cut(s) | 1027 |
| Psp5II | RGGWCCY | 1 cut(s) | 1539 |
| Psp6I | CCWGG | 2 cut(s) | 178, 904 |
| PspGI | CCWGG | 2 cut(s) | 178, 904 |
| PspN4I | GGNNCC | 1 cut(s) | 815 |
| PspPI | GGNCC | 7 cut(s) | 96, 252, 283, 523, 600, 989, 1539 |
| PspPPI | RGGWCCY | 1 cut(s) | 1539 |
| PspXI | VCTCGAGB | 1 cut(s) | 1082 |
| PstI | CTGCAG | 1 cut(s) | 661 |
| PstNI | CAGNNNCTG | 1 cut(s) | 959 |
| PvuII | CAGCTG | 3 cut(s) | 11, 662, 923 |
| RruI | TCGCGA | 1 cut(s) | 134 |
| RsaI | GTAC | 1 cut(s) | 1126 |
| RsaNI | GTAC | 1 cut(s) | 1125 |
| SacI | GAGCTC | 1 cut(s) | 1027 |
| SaqAI | TTAA | 5 cut(s) | 84, 224, 330, 354, 884 |
| SatI | GCNGC | 8 cut(s) | 9, 603, 606, 657, 660, 663, 1239, 1314 |
| Sau3AI | GATC | 4 cut(s) | 76, 112, 478, 829 |
| Sau96I | GGNCC | 7 cut(s) | 96, 252, 283, 523, 600, 989, 1539 |
| SchI | GAGTC | 2 cut(s) | 265, 719 |
| ScrFI | CCNGG | 2 cut(s) | 180, 906 |
| SduI | GDGCHC | 2 cut(s) | 425, 1027 |
| SfcI | CTRYAG | 3 cut(s) | 657, 1066, 1476 |
| Sfr274I | CTCGAG | 1 cut(s) | 1082 |
| SinI | GGWCC | 5 cut(s) | 96, 252, 523, 989, 1539 |
| SlaI | CTCGAG | 1 cut(s) | 1082 |
| SmiI | ATTTAAAT | 1 cut(s) | 225 |
| SmlI | CTYRAG | 2 cut(s) | 993, 1082 |
| SmoI | CTYRAG | 2 cut(s) | 993, 1082 |
| SseBI | AGGCCT | 1 cut(s) | 474 |
| SsiI | CCGC | 2 cut(s) | 603, 811 |
| SspI | AATATT | 1 cut(s) | 679 |
| SspMI | CTAG | 6 cut(s) | 633, 702, 864, 984, 1382, 1536 |
| SstI | GAGCTC | 1 cut(s) | 1027 |
| StuI | AGGCCT | 1 cut(s) | 474 |
| StyD4I | CCNGG | 2 cut(s) | 178, 904 |
| StyI | CCWWGG | 3 cut(s) | 99, 1051, 1436 |
| SwaI | ATTTAAAT | 1 cut(s) | 225 |
| TaaI | ACNGT | 4 cut(s) | 640, 710, 1214, 1331 |
| TaiI | ACGT | 1 cut(s) | 1250 |
| TaqI | TCGA | 2 cut(s) | 202, 1083 |
| TatI | WGTACW | 1 cut(s) | 1124 |
| TauI | GCSGC | 1 cut(s) | 605 |
| TfiI | GAWTC | 5 cut(s) | 529, 977, 1220, 1457, 1517 |
| Tru1I | TTAA | 5 cut(s) | 84, 224, 330, 354, 884 |
| Tru9I | TTAA | 5 cut(s) | 84, 224, 330, 354, 884 |
| TscAI | CASTG | 5 cut(s) | 47, 381, 525, 832, 1336 |
| TseFI | GTSAC | 3 cut(s) | 736, 1181, 1325 |
| TseI | GCWGC | 7 cut(s) | 8, 605, 656, 659, 662, 1238, 1313 |
| Tsp45I | GTSAC | 3 cut(s) | 736, 1181, 1325 |
| TspDTI | ATGAA | 5 cut(s) | 38, 635, 990, 1415, 1484 |
| TspGWI | ACGGA | 2 cut(s) | 348, 386 |
| TspRI | CASTG | 5 cut(s) | 47, 381, 525, 832, 1336 |
| VpaK11BI | GGWCC | 5 cut(s) | 96, 252, 523, 989, 1539 |
| XapI | RAATTY | 6 cut(s) | 346, 1033, 1042, 1094, 1115, 1194 |
| XceI | RCATGY | 2 cut(s) | 669, 1499 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 293 |
| XhoI | CTCGAG | 1 cut(s) | 1082 |
| XmnI | GAANNNNTTC | 1 cut(s) | 18 |
| XspI | CTAG | 6 cut(s) | 633, 702, 864, 984, 1382, 1536 |
| Zsp2I | ATGCAT | 1 cut(s) | 1501 |