Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Reverse (-)

46316367 .. 46319140

Gene Structure 2774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57860

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGACAGGCCCTACGAGACGATCAACAAAGGGAGGCTGGACAGAGGAAGAGGATAGAATTCTAGCAGATGCTGTCGAGAAGCACAATGGCAAGAACTGGAAAAGGATTGCTGAATGTGTTCGTGGCAGAACAGATGTTCAGTGCCTTCATCGCTGGCAGAAAGTCCTCTCACCTGATCTTGTTAAAGGATTTTGGTCTAAGGAGGAAGATGATCTAATAATTGAGTTAGTCGCAAAGCAGGGGAATAAGAAATGGTCTGAAATAGCAAAGTCCTTGCCAGGCCGTATAGGCAAGCAATGTCGAGAGAGGTGGCACAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACAAATGAAGAAGAAAAGATTCTAATTGAGTCGCATAAAGCCTATGGGAACAAATGGGCTGAAATAGCAAAGCTTCTGCCTGGAAGGACAGAAAATTCAATAAAGAACCACTGGAACTGCTCAGTTAAGAAAAAATTAGAGCTACGCTCATTCCATATATCTAATATGGAAAGTCATAAAATAAAAGCAGGAGTCAGAAAGACAGAGGCGGTAAGACAAAGTCTTGATCGGATAGCCAACTTCGATAAAAATGTGGAAACTTGTTCAATTAATCTTGATCTGGTTCTTGGAACTCCTAAAGGAAGGGAGATCCAGATAAAATCTTTGGACAAAGGAAATCGCGGTTGGCTTACAAAAGGAGCTGGTGCAGATAATATGATCAAATCATCACCTAGTAACCTTTATTACGATAGAGCTGCAGCTGCATATGGTCTAAATGTTGAACAACGGAAAGAAATTTATCATAACTATGGCAGGTTGAGAGACTCGCATTATTTATCTGCTAAACAATCAATCAAAGCTTGCACTACTTCTTCCTGTGATCTTTGGGGTTTTCCCTATTTTCATGGAAAGAATCATAAACCCAATCACCCTATGAGTTTGTTGAATAATTGCTCAGATTCTTTTGACTACAATAGAGGAGCTGGAAATTTTCTCAAGAAACCAGATCGTCCTATTACAGTTGAGAGATTACATGAATCTTGTAAAGTATCACAAGCTTATGAGGAAACTAAAGATGCTGGTGGAGCTACTGAGCATTCAGAGGCTTCAAACCCTGGTTGCTTGTGCTATAGGCCACTCCAACAAGAGGATTTGAACTATTTTTTAAAAAATGGTGAATTCCCAAGCACAGATAGTTACATCCAGACAGCATTTAGTTCAGTTTCCTTATGCACCCCACCAAGCCAAGACAGAGGAATATCTGTTGATTGTAATGATCCAGATTCCACATTGAGAAGTGCAGCAAGGACTTTTAAGAGTTCGCCATCTATCCTAAGAAAACGAAGACATCCAATTTCCAGACAAAGTCTCAACTCAGAGCATCACTATGTCATCTCAGAAGAAATTAGCAATAACTCCAGAAACAGCCTCAACATTCTAAGTCCATGTGGTGAGACAAAATTCCATTGCATGGCTCGATCAAATGTCAAAAAACTTTTCCTCTCTCCTCAAAAGTCTCAGAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

513

Amino Acids

58.36

Weight (kDa)

9.33

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	10 - 56	2.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	13 - 69	5.7e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	63 - 108	1.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	65 - 122	1.3e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	114 - 156	2.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	117 - 163	2.2e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	816
AccB7I	CCANNNNNTGG	1 cut(s)	1483
AccII	CGCG	1 cut(s)	693
AciI	CCGC	2 cut(s)	560, 693
AclWI	GGATC	2 cut(s)	655, 1283
AcsI	RAATTY	6 cut(s)	57, 445, 807, 1000, 1190, 1472
AfiI	CCNNNNNNNGG	2 cut(s)	1159, 1483
AgsI	TTSAA	6 cut(s)	450, 618, 794, 958, 1122, 1168
AjnI	CCWGG	3 cut(s)	277, 430, 1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	679, 711
Alw26I	GTCTC	5 cut(s)	10, 828, 1385, 1460, 1533
AlwI	GGATC	2 cut(s)	655, 1283
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	3 cut(s)	7, 280, 1145
ApeKI	GCWGC	4 cut(s)	767, 770, 773, 1313
ApoI	RAATTY	6 cut(s)	57, 445, 807, 1000, 1190, 1472
AseI	ATTAAT	1 cut(s)	621
Asp700I	GAANNNNTTC	2 cut(s)	117, 369
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	5 cut(s)	162, 732, 932, 1199, 1475
BbsI	GAAGAC	1 cut(s)	1363
BbvI	GCAGC	4 cut(s)	754, 760, 782, 1325
BccI	CCATC	1 cut(s)	1345
BceAI	ACGGC	1 cut(s)	267
BcgI	CGANNNNNNTGC	2 cut(s)	749, 783
BciT130I	CCWGG	3 cut(s)	279, 432, 1128
BclI	TGATCA	1 cut(s)	729
BcoDI	GTCTC	5 cut(s)	10, 828, 1385, 1460, 1533
BfaI	CTAG	2 cut(s)	62, 744
BfmI	CTRYAG	2 cut(s)	768, 1141
BfuAI	ACCTGC	1 cut(s)	816
BglI	GCCNNNNNGGC	1 cut(s)	288
BisI	GCNGC	4 cut(s)	768, 771, 774, 1314
BlsI	GCNGC	4 cut(s)	769, 772, 775, 1315
Bme1390I	CCNGG	3 cut(s)	279, 432, 1128
BmgT120I	GGNCC	1 cut(s)	8
BmrFI	CCNGG	3 cut(s)	279, 432, 1128
BmsI	GCATC	3 cut(s)	58, 1078, 1402
BpiI	GAAGAC	1 cut(s)	1363
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpmI	CTGGAG	1 cut(s)	1414
BpuEI	CTTGAG	1 cut(s)	992
BsaJI	CCNNGG	1 cut(s)	1126
Bsc4I	CCNNNNNNNGG	2 cut(s)	1159, 1483
Bse1I	ACTGG	2 cut(s)	101, 467
Bse3DI	GCAATG	2 cut(s)	302, 1477
BseBI	CCWGG	3 cut(s)	279, 432, 1128
BseDI	CCNNGG	1 cut(s)	1126
BseGI	GGATG	2 cut(s)	1212, 1360
BseLI	CCNNNNNNNGG	2 cut(s)	1159, 1483
BseMI	GCAATG	2 cut(s)	302, 1477
BseMII	CTCAG	5 cut(s)	486, 981, 1095, 1401, 1422
BseNI	ACTGG	2 cut(s)	101, 467
BseRI	GAGGAG	2 cut(s)	1005, 1509
BseXI	GCAGC	4 cut(s)	754, 760, 782, 1325
BsgI	GTGCAG	2 cut(s)	738, 1332
Bsh1236I	CGCG	1 cut(s)	693
BshFI	GGCC	3 cut(s)	9, 282, 1147
BslI	CCNNNNNNNGG	2 cut(s)	1159, 1483
BsmAI	GTCTC	5 cut(s)	10, 828, 1385, 1460, 1533
BsmBI	CGTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	1108
BsnI	GGCC	3 cut(s)	9, 282, 1147
BspACI	CCGC	2 cut(s)	560, 693
BspANI	GGCC	3 cut(s)	9, 282, 1147
BspCNI	CTCAG	5 cut(s)	485, 980, 1096, 1400, 1421
BspFNI	CGCG	1 cut(s)	693
BspMAI	CTGCAG	1 cut(s)	772
BspMI	ACCTGC	1 cut(s)	816
BspPI	GGATC	2 cut(s)	655, 1283
BsrDI	GCAATG	2 cut(s)	302, 1477
BsrI	ACTGG	2 cut(s)	101, 467
BssECI	CCNNGG	1 cut(s)	1126
Bst2UI	CCWGG	3 cut(s)	279, 432, 1128
Bst4CI	ACNGT	1 cut(s)	1033
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	3 cut(s)	155, 293, 874
BstDEI	CTNAG	9 cut(s)	198, 472, 967, 1104, 1346, 1387, 1408, 1451, 1530
BstF5I	GGATG	2 cut(s)	1212, 1360
BstFNI	CGCG	1 cut(s)	693
BstMAI	GTCTC	5 cut(s)	10, 828, 1385, 1460, 1533
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 288, 416, 773, 1097
BstNI	CCWGG	3 cut(s)	279, 432, 1128
BstSCI	CCNGG	3 cut(s)	277, 430, 1126
BstSFI	CTRYAG	2 cut(s)	768, 1141
BstUI	CGCG	1 cut(s)	693
BstV1I	GCAGC	4 cut(s)	754, 760, 782, 1325
BstV2I	GAAGAC	1 cut(s)	1363
BstX2I	RGATCY	1 cut(s)	660
BstYI	RGATCY	1 cut(s)	660
BsuRI	GGCC	3 cut(s)	9, 282, 1147
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	1212, 1360
BtsIMutI	CAGTG	2 cut(s)	146, 460
BveI	ACCTGC	1 cut(s)	816
Cac8I	GCNNGC	3 cut(s)	155, 293, 874
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	8
CviAII	CATG	5 cut(s)	348, 917, 1046, 1458, 1483
DdeI	CTNAG	9 cut(s)	198, 472, 967, 1104, 1346, 1387, 1408, 1451, 1530
DraI	TTTAAA	2 cut(s)	324, 1179
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRI	GAATTC	2 cut(s)	57, 1190
EcoRII	CCWGG	3 cut(s)	277, 430, 1126
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	5 cut(s)	351, 920, 1049, 1461, 1486
FatI	CATG	5 cut(s)	347, 916, 1045, 1457, 1482
FauNDI	CATATG	1 cut(s)	778
FbaI	TGATCA	1 cut(s)	729
Fnu4HI	GCNGC	4 cut(s)	768, 771, 774, 1314
FokI	GGATG	2 cut(s)	1199, 1347
Fsp4HI	GCNGC	4 cut(s)	768, 771, 774, 1314
FspBI	CTAG	2 cut(s)	62, 744
GluI	GCNGC	4 cut(s)	768, 771, 774, 1314
GsuI	CTGGAG	1 cut(s)	1414
HaeIII	GGCC	3 cut(s)	9, 282, 1147
Hin1II	CATG	5 cut(s)	351, 920, 1049, 1461, 1486
HindIII	AAGCTT	4 cut(s)	422, 870, 1068, 1535
HinfI	GANTC	8 cut(s)	370, 380, 543, 836, 925, 971, 1049, 1295
HphI	GGTGA	5 cut(s)	162, 732, 932, 1199, 1475
Hpy188I	TCNGA	8 cut(s)	259, 548, 582, 970, 1114, 1390, 1411, 1533
HpyAV	CCTTC	3 cut(s)	155, 429, 648
HpyCH4III	ACNGT	1 cut(s)	1033
HpyCH4V	TGCA	8 cut(s)	347, 719, 770, 776, 876, 1245, 1313, 1482
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 288, 416, 773, 1097
HpyF3I	CTNAG	9 cut(s)	198, 472, 967, 1104, 1346, 1387, 1408, 1451, 1530
Hsp92II	CATG	5 cut(s)	351, 920, 1049, 1461, 1486
Ksp22I	TGATCA	1 cut(s)	729
LmnI	GCTCC	3 cut(s)	710, 992, 1097
Lsp1109I	GCAGC	4 cut(s)	754, 760, 782, 1325
LweI	GCATC	3 cut(s)	58, 1078, 1402
MaeI	CTAG	2 cut(s)	62, 744
MaeIII	GTNAC	2 cut(s)	746, 1208
MboII	GAAGA	7 cut(s)	59, 218, 371, 374, 876, 1368, 1424
MflI	RGATCY	1 cut(s)	660
MlyI	GAGTC	3 cut(s)	389, 552, 830
MmeI	TCCRAC	1 cut(s)	1177
MroXI	GAANNNNTTC	2 cut(s)	117, 369
MseI	TTAA	6 cut(s)	183, 323, 477, 621, 1178, 1326
MslI	CAYNNNNRTG	2 cut(s)	819, 1398
MspA1I	CMGCKG	1 cut(s)	773
MspR9I	CCNGG	3 cut(s)	279, 432, 1128
Mva1269I	GAATGC	1 cut(s)	1108
MvaI	CCWGG	3 cut(s)	279, 432, 1128
MvnI	CGCG	1 cut(s)	693
MwoI	GCNNNNNNNGC	5 cut(s)	150, 288, 416, 773, 1097
NdeI	CATATG	1 cut(s)	778
NlaIII	CATG	5 cut(s)	351, 920, 1049, 1461, 1486
PctI	GAATGC	1 cut(s)	1108
PdmI	GAANNNNTTC	2 cut(s)	117, 369
PfeI	GAWTC	5 cut(s)	370, 925, 971, 1049, 1295
PflFI	GACNNNGTC	2 cut(s)	570, 1377
PflMI	CCANNNNNTGG	1 cut(s)	1483
PkrI	GCNGC	4 cut(s)	769, 772, 775, 1315
PleI	GAGTC	3 cut(s)	388, 551, 830
PpsI	GAGTC	3 cut(s)	388, 551, 830
PshBI	ATTAAT	1 cut(s)	621
Psp6I	CCWGG	3 cut(s)	277, 430, 1126
PspGI	CCWGG	3 cut(s)	277, 430, 1126
PspPI	GGNCC	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	772
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	660
PsyI	GACNNNGTC	2 cut(s)	570, 1377
PvuII	CAGCTG	1 cut(s)	773
RseI	CAYNNNNRTG	2 cut(s)	819, 1398
SaqAI	TTAA	6 cut(s)	183, 323, 477, 621, 1178, 1326
SatI	GCNGC	4 cut(s)	768, 771, 774, 1314
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	3 cut(s)	389, 552, 830
ScrFI	CCNGG	3 cut(s)	279, 432, 1128
SfaNI	GCATC	3 cut(s)	58, 1078, 1402
SfcI	CTRYAG	2 cut(s)	768, 1141
SmiI	ATTTAAAT	1 cut(s)	324
SmiMI	CAYNNNNRTG	2 cut(s)	819, 1398
SmlI	CTYRAG	1 cut(s)	1007
SmoI	CTYRAG	1 cut(s)	1007
SsiI	CCGC	2 cut(s)	560, 693
SspMI	CTAG	2 cut(s)	62, 744
StyD4I	CCNGG	3 cut(s)	277, 430, 1126
SwaI	ATTTAAAT	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	1033
TaqI	TCGA	4 cut(s)	75, 301, 594, 1489
TfiI	GAWTC	5 cut(s)	370, 925, 971, 1049, 1295
Tru1I	TTAA	6 cut(s)	183, 323, 477, 621, 1178, 1326
Tru9I	TTAA	6 cut(s)	183, 323, 477, 621, 1178, 1326
TscAI	CASTG	2 cut(s)	146, 467
TseI	GCWGC	4 cut(s)	767, 770, 773, 1313
TspDTI	ATGAA	4 cut(s)	137, 372, 905, 1062
TspGWI	ACGGA	1 cut(s)	814
TspRI	CASTG	2 cut(s)	146, 467
Tth111I	GACNNNGTC	2 cut(s)	570, 1377
Van91I	CCANNNNNTGG	1 cut(s)	1483
VspI	ATTAAT	1 cut(s)	621
XapI	RAATTY	6 cut(s)	57, 445, 807, 1000, 1190, 1472
XmnI	GAANNNNTTC	2 cut(s)	117, 369
XspI	CTAG	2 cut(s)	62, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.