Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Reverse (-)

33421013 .. 33422470

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGATGGACTCCCCAACTTCGGCATATTATTTGAAGGGTTTGATGGAGGATGACTGCTGGGCTTTGTTCATGCAACGAGCTTTTGGACGAGGAGAAGAAGAGAAGTATCCCAACCTCTGCCTGATTGGAAAGAAGATTGCGAAGAAATGTGGTGGTGTACCATTAGCAGCCAAAAGTTTGGGAAGTGTTATGCGCTTTAAAAGAGAAGAACGGCAATGGTTGTTTATGCAAAATAGTGAACTGTGGGAAGTAGAAGGATGCAAACAAAGAATTTTACCAGCGCTTATGTTGAGTTATCTTCATCTGCCATCACATCTTCGACAATGCTTTGCATTCTGCTCCATATTTCCTAAAAATTATGAATTCAAGAAGCATAAATTAGTTCTCTTGTGGATGGCAGAAGGCTTAATTCTAGAAGAAGGTAGCAAGCGACCGGAAGACATTGGTGATGAATACTTTTCTGATTTTCTGTGGATGTCTTTCTTTCAAGAAGTAGAGTTACGTGATGGTGGCAGCACAGTTGGATACAAAATGAATGATGTCATTCATGACCTTGCACGATATGTTTCTGGAAATGAATCCGTTATGCTTGAACAAGGTCTTCCACCGAGTAATCCAGCACAAATTCGCCGCTCATCCATTATTTATAAATACAGGGAAGTTACAATTCCAGAAGCTCTCTTTGAAGCAGAACATTTACGAACTGTCTTATTGATTGGAGAATATGGACTTCTAAAAGACAGTAGTAAAATGTTATTAAGTTGTATATACTTGCGTGTGCTGGACTTAAACAACTGTGATGTTCATTTTTTGCCGTCATCAATAGGTGGGTTGATATGTTTGAGGTATCTCGACTTGTCTTATACACCTATCTCCAAGTTGCCGGCAACCACAAGGAATCTCTGTTCATTGCAGACTTTAAACCTCTCTGGATGTCATAATCTTAGAGTCTTGCCAGACTTCGAAGTAATGACCGGCCTAAGACATCTCAATATAGCTGGATGTGATAGCTTGTGGTATATACCTCCTGGTATTAAAATGTTACTTCAACTTCAGACACTGCCATTATATTTCGTTCACAAGAGGGTCGGTGATCTTGGTGTACTAGAGAATTTGAATCTTTATGGGGAGTTGAATATTACACACTTGGAGAATGTGAGAAATGCAACTGGAGCTCAATCATCTGGACTGAAGATGAAAGAAAATCTTGAGTCGTTGGGATTATATTGGGGAGATTTTGAAGATGTGAACGGCAGGAAAAAAATCAAAAAATCATTGAAGAAACTAGCCAAGTCCCCAGCCAAAAGGTTTTTTTTCGAAGCAGGGGTACGGTGGCATGAACCTGATGCTGAAGAGGCGGTAGAAATTCTTGATGGCCTGAAACCACACAAGAATTTGAAAAAGCTATACATGGTTATCCAGGAATCAGATTTCCAGATTGGACTCTCCCAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

485

Amino Acids

55.46

Weight (kDa)

7.54

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	115 - 186	2.8e-24	Disease resistance protein Winged helix domain
LRR_14	PF23598	250 - 429	2.9e-19	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	367 - 471	3.8e-10	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
AccBSI	CCGCTC	1 cut(s)	633
AciI	CCGC	2 cut(s)	631, 1358
AcsI	RAATTY	6 cut(s)	270, 362, 624, 1111, 1365, 1393
AcuI	CTGAAG	3 cut(s)	1037, 1211, 1371
AfaI	GTAC	3 cut(s)	159, 1104, 1329
AfeI	AGCGCT	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	1027, 1419
AloI	GAACNNNNNNTCC	2 cut(s)	889, 921
AluBI	AGCT	6 cut(s)	80, 677, 998, 1011, 1175, 1405
AluI	AGCT	6 cut(s)	80, 677, 998, 1011, 1175, 1405
Alw21I	GWGCWC	1 cut(s)	1177
AlwNI	CAGNNNCTG	1 cut(s)	1060
Aor51HI	AGCGCT	1 cut(s)	282
AoxI	GGCC	2 cut(s)	976, 1375
ApeKI	GCWGC	2 cut(s)	167, 513
ApoI	RAATTY	6 cut(s)	270, 362, 624, 1111, 1365, 1393
AspLEI	GCGC	2 cut(s)	195, 283
AsuHPI	GGTGA	2 cut(s)	458, 1103
AsuII	TTCGAA	2 cut(s)	963, 1317
BanII	GRGCYC	1 cut(s)	1177
BarI	GAAGNNNNNNTAC	4 cut(s)	483, 515, 1311, 1343
BbsI	GAAGAC	2 cut(s)	444, 593
Bbv12I	GWGCWC	1 cut(s)	1177
BbvI	GCAGC	2 cut(s)	179, 525
BccI	CCATC	5 cut(s)	37, 316, 388, 500, 1367
BceAI	ACGGC	3 cut(s)	227, 799, 1267
BciT130I	CCWGG	2 cut(s)	1029, 1421
BciVI	GTATCC	2 cut(s)	117, 518
BfaI	CTAG	3 cut(s)	413, 1106, 1286
BfoI	RGCGCY	1 cut(s)	284
BfuI	GTATCC	2 cut(s)	117, 518
BisI	GCNGC	3 cut(s)	168, 514, 631
BlsI	GCNGC	3 cut(s)	169, 515, 632
Bme1390I	CCNGG	2 cut(s)	1029, 1421
BmrFI	CCNGG	2 cut(s)	1029, 1421
BmsI	GCATC	2 cut(s)	248, 1336
BpiI	GAAGAC	2 cut(s)	444, 593
BpmI	CTGGAG	1 cut(s)	1191
Bpu14I	TTCGAA	2 cut(s)	963, 1317
BpuEI	CTTGAG	1 cut(s)	1229
BsaAI	YACGTR	1 cut(s)	503
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse118I	RCCGGY	2 cut(s)	883, 974
Bse1I	ACTGG	1 cut(s)	1174
Bse3DI	GCAATG	2 cut(s)	221, 908
BseBI	CCWGG	2 cut(s)	1029, 1421
BseGI	GGATG	7 cut(s)	55, 263, 399, 480, 635, 938, 1007
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	2 cut(s)	221, 908
BseNI	ACTGG	1 cut(s)	1174
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	179, 525
BseYI	CCCAGC	2 cut(s)	57, 1297
Bsh1285I	CGRYCG	1 cut(s)	434
BshFI	GGCC	2 cut(s)	978, 1377
BsiEI	CGRYCG	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	1177
BsiSI	CCGG	3 cut(s)	434, 884, 975
BslFI	GGGAC	1 cut(s)	1279
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	1279
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	978, 1377
Bsp119I	TTCGAA	2 cut(s)	963, 1317
Bsp1286I	GDGCHC	1 cut(s)	1177
Bsp143I	GATC	1 cut(s)	1093
BspACI	CCGC	2 cut(s)	631, 1358
BspANI	GGCC	2 cut(s)	978, 1377
BspHI	TCATGA	1 cut(s)	547
BspT104I	TTCGAA	2 cut(s)	963, 1317
BsrBI	CCGCTC	1 cut(s)	633
BsrDI	GCAATG	2 cut(s)	221, 908
BsrFI	RCCGGY	2 cut(s)	883, 974
BsrI	ACTGG	1 cut(s)	1174
BssAI	RCCGGY	2 cut(s)	883, 974
BssMI	GATC	1 cut(s)	1093
Bst2UI	CCWGG	2 cut(s)	1029, 1421
Bst4CI	ACNGT	6 cut(s)	243, 520, 706, 743, 797, 1332
Bst6I	CTCTTC	2 cut(s)	93, 1347
BstBAI	YACGTR	1 cut(s)	503
BstBI	TTCGAA	2 cut(s)	963, 1317
BstC8I	GCNNGC	2 cut(s)	428, 885
BstDEI	CTNAG	2 cut(s)	944, 980
BstF5I	GGATG	7 cut(s)	55, 263, 399, 480, 635, 938, 1007
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	2 cut(s)	195, 283
BstKTI	GATC	1 cut(s)	1096
BstMBI	GATC	1 cut(s)	1093
BstMCI	CGRYCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	2 cut(s)	1172, 1355
BstNI	CCWGG	2 cut(s)	1029, 1421
BstSCI	CCNGG	2 cut(s)	1027, 1419
BstV1I	GCAGC	2 cut(s)	179, 525
BstV2I	GAAGAC	2 cut(s)	444, 593
BstXI	CCANNNNNNTGG	1 cut(s)	178
BsuI	GTATCC	2 cut(s)	117, 518
BsuRI	GGCC	2 cut(s)	978, 1377
BtsCI	GGATG	7 cut(s)	55, 263, 399, 480, 635, 938, 1007
BtsI	GCAGTG	1 cut(s)	1058
BtsIMutI	CAGTG	1 cut(s)	1058
Cac8I	GCNNGC	2 cut(s)	428, 885
CaiI	CAGNNNCTG	1 cut(s)	1060
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	2 cut(s)	195, 283
Cfr10I	RCCGGY	2 cut(s)	883, 974
Csp6I	GTAC	3 cut(s)	158, 1103, 1328
CviAII	CATG	4 cut(s)	70, 548, 1337, 1411
CviQI	GTAC	3 cut(s)	158, 1103, 1328
DdeI	CTNAG	2 cut(s)	944, 980
DpnI	GATC	1 cut(s)	1095
DpnII	GATC	1 cut(s)	1093
DraI	TTTAAA	2 cut(s)	199, 921
Eam1104I	CTCTTC	2 cut(s)	93, 1347
EarI	CTCTTC	2 cut(s)	93, 1347
Ecl136II	GAGCTC	1 cut(s)	1175
Eco24I	GRGCYC	1 cut(s)	1177
Eco47III	AGCGCT	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	1175
Eco57I	CTGAAG	3 cut(s)	1037, 1211, 1371
EcoICRI	GAGCTC	1 cut(s)	1175
EcoRI	GAATTC	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	1027, 1419
EcoT38I	GRGCYC	1 cut(s)	1177
FaeI	CATG	4 cut(s)	73, 551, 1340, 1414
FalI	AAGNNNNNCTT	2 cut(s)	1191, 1223
FaqI	GGGAC	1 cut(s)	1279
FatI	CATG	4 cut(s)	69, 547, 1336, 1410
Fnu4HI	GCNGC	3 cut(s)	168, 514, 631
FokI	GGATG	7 cut(s)	62, 270, 406, 487, 622, 945, 1014
FriOI	GRGCYC	1 cut(s)	1177
Fsp4HI	GCNGC	3 cut(s)	168, 514, 631
FspBI	CTAG	3 cut(s)	413, 1106, 1286
GlaI	GCGC	2 cut(s)	194, 282
GluI	GCNGC	3 cut(s)	168, 514, 631
GsaI	CCCAGC	2 cut(s)	61, 1301
GsuI	CTGGAG	1 cut(s)	1191
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	978, 1377
HapII	CCGG	3 cut(s)	434, 884, 975
HhaI	GCGC	2 cut(s)	195, 283
Hin1II	CATG	4 cut(s)	73, 551, 1340, 1414
Hin6I	GCGC	2 cut(s)	193, 281
HinP1I	GCGC	2 cut(s)	193, 281
HinfI	GANTC	8 cut(s)	8, 578, 898, 948, 1117, 1211, 1424, 1443
HpaII	CCGG	3 cut(s)	434, 884, 975
HphI	GGTGA	2 cut(s)	458, 1103
Hpy166II	GTNNAC	5 cut(s)	158, 239, 1078, 1103, 1249
Hpy188I	TCNGA	3 cut(s)	463, 1056, 1429
Hpy8I	GTNNAC	5 cut(s)	158, 239, 1078, 1103, 1249
HpyAV	CCTTC	4 cut(s)	28, 248, 395, 413
HpyCH4III	ACNGT	6 cut(s)	243, 520, 706, 743, 797, 1332
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	7 cut(s)	73, 229, 261, 332, 557, 913, 1166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1172, 1355
HpyF3I	CTNAG	2 cut(s)	944, 980
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	4 cut(s)	73, 551, 1340, 1414
HspAI	GCGC	2 cut(s)	193, 281
KroI	GCCGGC	1 cut(s)	883
KroNI	GCCGGC	1 cut(s)	885
Kzo9I	GATC	1 cut(s)	1093
LmnI	GCTCC	2 cut(s)	344, 1172
Lsp1109I	GCAGC	2 cut(s)	179, 525
LweI	GCATC	2 cut(s)	248, 1336
MaeI	CTAG	3 cut(s)	413, 1106, 1286
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	3 cut(s)	498, 661, 1041
MalI	GATC	1 cut(s)	1095
MbiI	CCGCTC	1 cut(s)	633
MboI	GATC	1 cut(s)	1093
MhlI	GDGCHC	1 cut(s)	1177
MlyI	GAGTC	4 cut(s)	2, 957, 1220, 1437
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	8 cut(s)	40, 83, 125, 837, 935, 1035, 1077, 1348
MroNI	GCCGGC	1 cut(s)	883
MseI	TTAA	6 cut(s)	198, 407, 758, 788, 920, 1035
MspI	CCGG	3 cut(s)	434, 884, 975
MspR9I	CCNGG	2 cut(s)	1029, 1421
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	2 cut(s)	1029, 1421
MwoI	GCNNNNNNNGC	2 cut(s)	1172, 1355
NaeI	GCCGGC	1 cut(s)	885
NdeII	GATC	1 cut(s)	1093
NgoMIV	GCCGGC	1 cut(s)	883
NlaIII	CATG	4 cut(s)	73, 551, 1340, 1414
NspV	TTCGAA	2 cut(s)	963, 1317
PagI	TCATGA	1 cut(s)	547
PctI	GAATGC	1 cut(s)	332
PdiI	GCCGGC	1 cut(s)	885
PfeI	GAWTC	4 cut(s)	578, 898, 1117, 1424
PfoI	TCCNGGA	1 cut(s)	1419
PkrI	GCNGC	3 cut(s)	169, 515, 632
PleI	GAGTC	4 cut(s)	2, 956, 1219, 1437
PpsI	GAGTC	4 cut(s)	2, 956, 1219, 1437
Ppu21I	YACGTR	1 cut(s)	503
PsiI	TTATAA	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	1177
Psp6I	CCWGG	2 cut(s)	1027, 1419
PspFI	CCCAGC	2 cut(s)	57, 1297
PspGI	CCWGG	2 cut(s)	1027, 1419
PstNI	CAGNNNCTG	1 cut(s)	1060
RsaI	GTAC	3 cut(s)	159, 1104, 1329
RsaNI	GTAC	3 cut(s)	158, 1103, 1328
SacI	GAGCTC	1 cut(s)	1177
SaqAI	TTAA	6 cut(s)	198, 407, 758, 788, 920, 1035
SatI	GCNGC	3 cut(s)	168, 514, 631
Sau3AI	GATC	1 cut(s)	1093
SchI	GAGTC	4 cut(s)	2, 957, 1220, 1437
ScrFI	CCNGG	2 cut(s)	1029, 1421
SduI	GDGCHC	1 cut(s)	1177
SfaNI	GCATC	2 cut(s)	248, 1336
SfuI	TTCGAA	2 cut(s)	963, 1317
SmlI	CTYRAG	1 cut(s)	1208
SmoI	CTYRAG	1 cut(s)	1208
SsiI	CCGC	2 cut(s)	631, 1358
SspI	AATATT	1 cut(s)	1138
SspMI	CTAG	3 cut(s)	413, 1106, 1286
SstI	GAGCTC	1 cut(s)	1177
StyD4I	CCNGG	2 cut(s)	1027, 1419
TaaI	ACNGT	6 cut(s)	243, 520, 706, 743, 797, 1332
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	4 cut(s)	319, 852, 963, 1317
TatI	WGTACW	1 cut(s)	1102
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	4 cut(s)	578, 898, 1117, 1424
Tru1I	TTAA	6 cut(s)	198, 407, 758, 788, 920, 1035
Tru9I	TTAA	6 cut(s)	198, 407, 758, 788, 920, 1035
TscAI	CASTG	1 cut(s)	1065
TseI	GCWGC	2 cut(s)	167, 513
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	1065
XapI	RAATTY	6 cut(s)	270, 362, 624, 1111, 1365, 1393
XbaI	TCTAGA	1 cut(s)	412
XspI	CTAG	3 cut(s)	413, 1106, 1286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.