SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 431 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 232, 251 |
| AgsI | TTSAA | 1 cut(s) | 92 |
| AhlI | ACTAGT | 1 cut(s) | 164 |
| AjnI | CCWGG | 3 cut(s) | 225, 292, 454 |
| AluBI | AGCT | 3 cut(s) | 56, 85, 149 |
| AluI | AGCT | 3 cut(s) | 56, 85, 149 |
| Alw21I | GWGCWC | 1 cut(s) | 395 |
| Alw26I | GTCTC | 1 cut(s) | 41 |
| ApeKI | GCWGC | 1 cut(s) | 329 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 20 |
| AspLEI | GCGC | 1 cut(s) | 276 |
| AsuHPI | GGTGA | 2 cut(s) | 115, 241 |
| BaeGI | GKGCMC | 1 cut(s) | 436 |
| BanI | GGYRCC | 1 cut(s) | 431 |
| Bbv12I | GWGCWC | 1 cut(s) | 395 |
| BbvI | GCAGC | 1 cut(s) | 316 |
| BccI | CCATC | 2 cut(s) | 181, 347 |
| BciT130I | CCWGG | 3 cut(s) | 227, 294, 456 |
| BcoDI | GTCTC | 1 cut(s) | 41 |
| BcuI | ACTAGT | 1 cut(s) | 164 |
| BfaI | CTAG | 3 cut(s) | 71, 165, 312 |
| BfmI | CTRYAG | 1 cut(s) | 386 |
| BglII | AGATCT | 1 cut(s) | 447 |
| BisI | GCNGC | 1 cut(s) | 330 |
| BlpI | GCTNAGC | 1 cut(s) | 57 |
| BlsI | GCNGC | 1 cut(s) | 331 |
| Bme1390I | CCNGG | 3 cut(s) | 227, 294, 456 |
| BmiI | GGNNCC | 1 cut(s) | 433 |
| BmrFI | CCNGG | 3 cut(s) | 227, 294, 456 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 57 |
| BpuEI | CTTGAG | 1 cut(s) | 36 |
| BsaJI | CCNNGG | 3 cut(s) | 225, 292, 471 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 232, 251 |
| BseBI | CCWGG | 3 cut(s) | 227, 294, 456 |
| BseDI | CCNNGG | 3 cut(s) | 225, 292, 471 |
| BseGI | GGATG | 1 cut(s) | 288 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 232, 251 |
| BseMII | CTCAG | 1 cut(s) | 48 |
| BseSI | GKGCMC | 1 cut(s) | 436 |
| BseXI | GCAGC | 1 cut(s) | 316 |
| BshNI | GGYRCC | 1 cut(s) | 431 |
| BsiHKAI | GWGCWC | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 232, 251 |
| BsmAI | GTCTC | 1 cut(s) | 41 |
| Bsp1286I | GDGCHC | 2 cut(s) | 395, 436 |
| Bsp143I | GATC | 2 cut(s) | 352, 447 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 57 |
| BspCNI | CTCAG | 1 cut(s) | 49 |
| BspLI | GGNNCC | 1 cut(s) | 433 |
| BspT107I | GGYRCC | 1 cut(s) | 431 |
| BssECI | CCNNGG | 3 cut(s) | 225, 292, 471 |
| BssMI | GATC | 2 cut(s) | 352, 447 |
| BssT1I | CCWWGG | 1 cut(s) | 471 |
| Bst2UI | CCWGG | 3 cut(s) | 227, 294, 456 |
| BstDEI | CTNAG | 2 cut(s) | 57, 495 |
| BstEII | GGTNACC | 1 cut(s) | 475 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 230 |
| BstF5I | GGATG | 1 cut(s) | 288 |
| BstHHI | GCGC | 1 cut(s) | 276 |
| BstKTI | GATC | 2 cut(s) | 355, 450 |
| BstMAI | GTCTC | 1 cut(s) | 41 |
| BstMBI | GATC | 2 cut(s) | 352, 447 |
| BstNI | CCWGG | 3 cut(s) | 227, 294, 456 |
| BstPI | GGTNACC | 1 cut(s) | 475 |
| BstSCI | CCNGG | 3 cut(s) | 225, 292, 454 |
| BstSFI | CTRYAG | 1 cut(s) | 386 |
| BstSLI | GKGCMC | 1 cut(s) | 436 |
| BstV1I | GCAGC | 1 cut(s) | 316 |
| BstX2I | RGATCY | 1 cut(s) | 447 |
| BstYI | RGATCY | 1 cut(s) | 447 |
| BtsCI | GGATG | 1 cut(s) | 288 |
| CfoI | GCGC | 1 cut(s) | 276 |
| CviAII | CATG | 5 cut(s) | 13, 44, 260, 279, 326 |
| CviJI | RGCY | 5 cut(s) | 56, 74, 85, 149, 385 |
| CviKI_1 | RGCY | 5 cut(s) | 56, 74, 85, 149, 385 |
| DdeI | CTNAG | 2 cut(s) | 57, 495 |
| DpnI | GATC | 2 cut(s) | 354, 449 |
| DpnII | GATC | 2 cut(s) | 352, 447 |
| Eco130I | CCWWGG | 1 cut(s) | 471 |
| Eco91I | GGTNACC | 1 cut(s) | 475 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 230 |
| EcoO65I | GGTNACC | 1 cut(s) | 475 |
| EcoRII | CCWGG | 3 cut(s) | 225, 292, 454 |
| EcoT14I | CCWWGG | 1 cut(s) | 471 |
| ErhI | CCWWGG | 1 cut(s) | 471 |
| FaeI | CATG | 5 cut(s) | 16, 47, 263, 282, 329 |
| FaiI | YATR | 8 cut(s) | 14, 45, 241, 261, 280, 327, 336, 398 |
| FatI | CATG | 5 cut(s) | 12, 43, 259, 278, 325 |
| Fnu4HI | GCNGC | 1 cut(s) | 330 |
| FokI | GGATG | 1 cut(s) | 295 |
| Fsp4HI | GCNGC | 1 cut(s) | 330 |
| FspBI | CTAG | 3 cut(s) | 71, 165, 312 |
| GlaI | GCGC | 1 cut(s) | 275 |
| GluI | GCNGC | 1 cut(s) | 330 |
| HhaI | GCGC | 1 cut(s) | 276 |
| Hin1II | CATG | 5 cut(s) | 16, 47, 263, 282, 329 |
| Hin6I | GCGC | 1 cut(s) | 274 |
| HinP1I | GCGC | 1 cut(s) | 274 |
| HinfI | GANTC | 5 cut(s) | 49, 185, 263, 316, 374 |
| HphI | GGTGA | 2 cut(s) | 115, 241 |
| Hpy188I | TCNGA | 1 cut(s) | 424 |
| Hpy188III | TCNNGA | 4 cut(s) | 25, 219, 356, 378 |
| HpyAV | CCTTC | 4 cut(s) | 190, 226, 375, 394 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 495 |
| Hsp92II | CATG | 5 cut(s) | 16, 47, 263, 282, 329 |
| HspAI | GCGC | 1 cut(s) | 274 |
| Kzo9I | GATC | 2 cut(s) | 352, 447 |
| Lsp1109I | GCAGC | 1 cut(s) | 316 |
| MaeI | CTAG | 3 cut(s) | 71, 165, 312 |
| MaeIII | GTNAC | 1 cut(s) | 475 |
| MalI | GATC | 2 cut(s) | 354, 449 |
| MboI | GATC | 2 cut(s) | 352, 447 |
| MboII | GAAGA | 1 cut(s) | 154 |
| MflI | RGATCY | 1 cut(s) | 447 |
| MhlI | GDGCHC | 2 cut(s) | 395, 436 |
| MluCI | AATT | 2 cut(s) | 20, 36 |
| MlyI | GAGTC | 3 cut(s) | 43, 194, 257 |
| MnlI | CCTC | 4 cut(s) | 99, 132, 229, 491 |
| MroXI | GAANNNNTTC | 1 cut(s) | 20 |
| MseI | TTAA | 1 cut(s) | 35 |
| MslI | CAYNNNNRTG | 1 cut(s) | 281 |
| MspA1I | CMGCKG | 1 cut(s) | 85 |
| MspR9I | CCNGG | 3 cut(s) | 227, 294, 456 |
| MvaI | CCWGG | 3 cut(s) | 227, 294, 456 |
| NdeII | GATC | 2 cut(s) | 352, 447 |
| NlaIII | CATG | 5 cut(s) | 16, 47, 263, 282, 329 |
| NlaIV | GGNNCC | 1 cut(s) | 433 |
| PdmI | GAANNNNTTC | 1 cut(s) | 20 |
| PfeI | GAWTC | 2 cut(s) | 316, 374 |
| PkrI | GCNGC | 1 cut(s) | 331 |
| PleI | GAGTC | 3 cut(s) | 43, 193, 257 |
| PpsI | GAGTC | 3 cut(s) | 43, 193, 257 |
| Psp6I | CCWGG | 3 cut(s) | 225, 292, 454 |
| PspEI | GGTNACC | 1 cut(s) | 475 |
| PspGI | CCWGG | 3 cut(s) | 225, 292, 454 |
| PspN4I | GGNNCC | 1 cut(s) | 433 |
| PsuI | RGATCY | 1 cut(s) | 447 |
| PvuII | CAGCTG | 1 cut(s) | 85 |
| RseI | CAYNNNNRTG | 1 cut(s) | 281 |
| SaqAI | TTAA | 1 cut(s) | 35 |
| SatI | GCNGC | 1 cut(s) | 330 |
| Sau3AI | GATC | 2 cut(s) | 352, 447 |
| SchI | GAGTC | 3 cut(s) | 43, 194, 257 |
| ScrFI | CCNGG | 3 cut(s) | 227, 294, 456 |
| SduI | GDGCHC | 2 cut(s) | 395, 436 |
| SetI | ASST | 7 cut(s) | 58, 87, 151, 240, 251, 433, 496 |
| SfcI | CTRYAG | 1 cut(s) | 386 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 281 |
| SmlI | CTYRAG | 1 cut(s) | 51 |
| SmoI | CTYRAG | 1 cut(s) | 51 |
| SpeI | ACTAGT | 1 cut(s) | 164 |
| Sse9I | AATT | 2 cut(s) | 20, 36 |
| SspMI | CTAG | 3 cut(s) | 71, 165, 312 |
| StyD4I | CCNGG | 3 cut(s) | 225, 292, 454 |
| StyI | CCWWGG | 1 cut(s) | 471 |
| TaqI | TCGA | 2 cut(s) | 151, 366 |
| TasI | AATT | 2 cut(s) | 20, 36 |
| TfiI | GAWTC | 2 cut(s) | 316, 374 |
| Tru1I | TTAA | 1 cut(s) | 35 |
| Tru9I | TTAA | 1 cut(s) | 35 |
| TseI | GCWGC | 1 cut(s) | 329 |
| TspDTI | ATGAA | 4 cut(s) | 29, 209, 314, 413 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 230 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 82 |
| XmnI | GAANNNNTTC | 1 cut(s) | 20 |
| XspI | CTAG | 3 cut(s) | 71, 165, 312 |