Cyclic nucleotide-gated ion channel 1-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NmrA | PF05368 | 13 - 123 | 5.3e-10 | NmrA-like family |
| Epimerase | PF01370 | 16 - 129 | 5.7e-13 | NAD dependent epimerase/dehydratase family |
| 3Beta_HSD | PF01073 | 18 - 130 | 5.5e-10 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
| NAD_binding_10 | PF13460 | 20 - 127 | 2.4e-15 | NAD(P)H-binding |
| cNMP_binding | PF00027 | 591 - 685 | 1.2e-06 | Cyclic nucleotide-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1442 |
| Acc65I | GGTACC | 1 cut(s) | 374 |
| AccB1I | GGYRCC | 1 cut(s) | 374 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 714 |
| AccBSI | CCGCTC | 1 cut(s) | 169 |
| AccII | CGCG | 2 cut(s) | 296, 351 |
| AccIII | TCCGGA | 1 cut(s) | 274 |
| AciI | CCGC | 9 cut(s) | 169, 294, 296, 372, 468, 663, 1019, 1057, 2033 |
| AclWI | GGATC | 6 cut(s) | 266, 860, 873, 1537, 1930, 2256 |
| AcoI | YGGCCR | 3 cut(s) | 1067, 1756, 2193 |
| AcsI | RAATTY | 4 cut(s) | 126, 999, 1170, 1884 |
| AcyI | GRCGYC | 1 cut(s) | 1248 |
| AfaI | GTAC | 8 cut(s) | 376, 554, 1184, 1280, 1322, 1465, 1851, 2025 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 168, 446, 714, 1768, 2202 |
| AflIII | ACRYGT | 1 cut(s) | 349 |
| AgsI | TTSAA | 7 cut(s) | 1337, 1486, 1514, 1651, 1721, 1744, 2044 |
| AhlI | ACTAGT | 1 cut(s) | 622 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 429, 461 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 857, 889, 977, 1009 |
| Alw21I | GWGCWC | 2 cut(s) | 1308, 1776 |
| Alw26I | GTCTC | 5 cut(s) | 10, 649, 862, 917, 2265 |
| Alw44I | GTGCAC | 1 cut(s) | 1772 |
| AlwI | GGATC | 6 cut(s) | 266, 860, 873, 1537, 1930, 2256 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 728 |
| Aor13HI | TCCGGA | 1 cut(s) | 274 |
| ApaLI | GTGCAC | 1 cut(s) | 1772 |
| ApeKI | GCWGC | 1 cut(s) | 1021 |
| ApoI | RAATTY | 4 cut(s) | 126, 999, 1170, 1884 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1932 |
| Asp718I | GGTACC | 1 cut(s) | 374 |
| AspLEI | GCGC | 1 cut(s) | 1026 |
| AspS9I | GGNCC | 6 cut(s) | 60, 503, 583, 922, 2175, 2238 |
| AsuHPI | GGTGA | 4 cut(s) | 282, 883, 1883, 2068 |
| AsuNHI | GCTAGC | 3 cut(s) | 157, 530, 2116 |
| AvaII | GGWCC | 3 cut(s) | 503, 922, 2175 |
| AxyI | CCTNAGG | 1 cut(s) | 1782 |
| BaeGI | GKGCMC | 1 cut(s) | 1776 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 611, 644 |
| BalI | TGGCCA | 3 cut(s) | 1069, 1758, 2195 |
| BamHI | GGATCC | 1 cut(s) | 865 |
| BanI | GGYRCC | 1 cut(s) | 374 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2007, 2039 |
| BbsI | GAAGAC | 2 cut(s) | 349, 906 |
| Bbv12I | GWGCWC | 2 cut(s) | 1308, 1776 |
| BbvI | GCAGC | 1 cut(s) | 1033 |
| BccI | CCATC | 5 cut(s) | 230, 386, 530, 1042, 2009 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1114, 1148, 1285, 1319 |
| BclI | TGATCA | 1 cut(s) | 1659 |
| BcoDI | GTCTC | 5 cut(s) | 10, 649, 862, 917, 2265 |
| BcuI | ACTAGT | 1 cut(s) | 622 |
| BfaI | CTAG | 7 cut(s) | 158, 531, 561, 623, 1079, 1641, 2117 |
| BfoI | RGCGCY | 1 cut(s) | 1027 |
| BisI | GCNGC | 2 cut(s) | 170, 1022 |
| BlpI | GCTNAGC | 3 cut(s) | 173, 565, 1053 |
| BlsI | GCNGC | 2 cut(s) | 171, 1023 |
| BmcAI | AGTACT | 1 cut(s) | 554 |
| Bme18I | GGWCC | 3 cut(s) | 503, 922, 2175 |
| BmgT120I | GGNCC | 6 cut(s) | 60, 503, 583, 922, 2175, 2238 |
| BmiI | GGNNCC | 5 cut(s) | 61, 376, 867, 1312, 2177 |
| BmrI | ACTGGG | 3 cut(s) | 66, 435, 483 |
| BmsI | GCATC | 2 cut(s) | 208, 1955 |
| BmtI | GCTAGC | 3 cut(s) | 161, 534, 2120 |
| BmuI | ACTGGG | 3 cut(s) | 66, 435, 483 |
| BpiI | GAAGAC | 2 cut(s) | 349, 906 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 37 |
| BpmI | CTGGAG | 2 cut(s) | 122, 1748 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 173, 565, 1053 |
| BpuEI | CTTGAG | 3 cut(s) | 533, 917, 1922 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1832 |
| BsaHI | GRCGYC | 1 cut(s) | 1248 |
| BsaI | GGTCTC | 1 cut(s) | 10 |
| BsaJI | CCNNGG | 4 cut(s) | 294, 1252, 2079, 2196 |
| BsaWI | WCCGGW | 4 cut(s) | 29, 274, 647, 2263 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 495, 525, 657, 678, 687, 708 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 168, 446, 714, 1768, 2202 |
| Bse118I | RCCGGY | 2 cut(s) | 1768, 2275 |
| Bse1I | ACTGG | 3 cut(s) | 61, 441, 489 |
| Bse21I | CCTNAGG | 1 cut(s) | 1782 |
| Bse3DI | GCAATG | 1 cut(s) | 222 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1832 |
| BseAI | TCCGGA | 1 cut(s) | 274 |
| BseDI | CCNNGG | 4 cut(s) | 294, 1252, 2079, 2196 |
| BseGI | GGATG | 3 cut(s) | 254, 607, 1735 |
| BseJI | GATNNNNATC | 1 cut(s) | 1832 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 168, 446, 714, 1768, 2202 |
| BseMI | GCAATG | 1 cut(s) | 222 |
| BseMII | CTCAG | 6 cut(s) | 153, 164, 579, 928, 1773, 2018 |
| BseNI | ACTGG | 3 cut(s) | 61, 441, 489 |
| BseRI | GAGGAG | 3 cut(s) | 1235, 1238, 2126 |
| BseSI | GKGCMC | 1 cut(s) | 1776 |
| BseXI | GCAGC | 1 cut(s) | 1033 |
| Bsh1236I | CGCG | 2 cut(s) | 296, 351 |
| Bsh1285I | CGRYCG | 2 cut(s) | 652, 959 |
| BshNI | GGYRCC | 1 cut(s) | 374 |
| BsiEI | CGRYCG | 2 cut(s) | 652, 959 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1308, 1776 |
| BsiSI | CCGG | 8 cut(s) | 30, 63, 275, 648, 1027, 1769, 2264, 2276 |
| BslFI | GGGAC | 2 cut(s) | 1925, 2161 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 168, 446, 714, 1768, 2202 |
| BsmAI | GTCTC | 5 cut(s) | 10, 649, 862, 917, 2265 |
| BsmBI | CGTCTC | 1 cut(s) | 2265 |
| BsmFI | GGGAC | 2 cut(s) | 1925, 2161 |
| BsmI | GAATGC | 2 cut(s) | 718, 1126 |
| Bso31I | GGTCTC | 1 cut(s) | 10 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1308, 1776 |
| Bsp13I | TCCGGA | 1 cut(s) | 274 |
| Bsp1407I | TGTACA | 2 cut(s) | 1278, 1849 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 173, 565, 1053 |
| Bsp19I | CCATGG | 2 cut(s) | 1252, 2196 |
| BspACI | CCGC | 9 cut(s) | 169, 294, 296, 372, 468, 663, 1019, 1057, 2033 |
| BspCNI | CTCAG | 6 cut(s) | 152, 165, 578, 927, 1774, 2019 |
| BspEI | TCCGGA | 1 cut(s) | 274 |
| BspFNI | CGCG | 2 cut(s) | 296, 351 |
| BspHI | TCATGA | 1 cut(s) | 1671 |
| BspLI | GGNNCC | 5 cut(s) | 61, 376, 867, 1312, 2177 |
| BspOI | GCTAGC | 3 cut(s) | 161, 534, 2120 |
| BspPI | GGATC | 6 cut(s) | 266, 860, 873, 1537, 1930, 2256 |
| BspQI | GCTCTTC | 1 cut(s) | 1923 |
| BspT107I | GGYRCC | 1 cut(s) | 374 |
| BspTNI | GGTCTC | 1 cut(s) | 10 |
| BsrBI | CCGCTC | 1 cut(s) | 169 |
| BsrDI | GCAATG | 1 cut(s) | 222 |
| BsrFI | RCCGGY | 2 cut(s) | 1768, 2275 |
| BsrGI | TGTACA | 2 cut(s) | 1278, 1849 |
| BsrI | ACTGG | 3 cut(s) | 61, 441, 489 |
| BssAI | RCCGGY | 2 cut(s) | 1768, 2275 |
| BssECI | CCNNGG | 4 cut(s) | 294, 1252, 2079, 2196 |
| BssNI | GRCGYC | 1 cut(s) | 1248 |
| BssT1I | CCWWGG | 3 cut(s) | 1252, 2079, 2196 |
| Bst4CI | ACNGT | 8 cut(s) | 46, 538, 683, 940, 1406, 1849, 2087, 2259 |
| Bst6I | CTCTTC | 2 cut(s) | 1487, 1923 |
| BstACI | GRCGYC | 1 cut(s) | 1248 |
| BstAUI | TGTACA | 2 cut(s) | 1278, 1849 |
| BstDEI | CTNAG | 9 cut(s) | 139, 173, 565, 812, 914, 1053, 1586, 1782, 2027 |
| BstDSI | CCRYGG | 3 cut(s) | 294, 1252, 2196 |
| BstF5I | GGATG | 3 cut(s) | 254, 607, 1735 |
| BstFNI | CGCG | 2 cut(s) | 296, 351 |
| BstH2I | RGCGCY | 1 cut(s) | 1027 |
| BstHHI | GCGC | 1 cut(s) | 1026 |
| BstMAI | GTCTC | 5 cut(s) | 10, 649, 862, 917, 2265 |
| BstMCI | CGRYCG | 2 cut(s) | 652, 959 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 178, 465, 669, 1021, 1235, 1641 |
| BstNSI | RCATGY | 4 cut(s) | 596, 850, 1183, 1368 |
| BstSLI | GKGCMC | 1 cut(s) | 1776 |
| BstUI | CGCG | 2 cut(s) | 296, 351 |
| BstV1I | GCAGC | 1 cut(s) | 1033 |
| BstV2I | GAAGAC | 2 cut(s) | 349, 906 |
| BstX2I | RGATCY | 1 cut(s) | 865 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 496 |
| BstYI | RGATCY | 1 cut(s) | 865 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1782 |
| BtgI | CCRYGG | 3 cut(s) | 294, 1252, 2196 |
| BtgZI | GCGATG | 2 cut(s) | 58, 249 |
| BtsCI | GGATG | 3 cut(s) | 254, 607, 1735 |
| BtsI | GCAGTG | 1 cut(s) | 506 |
| BtsIMutI | CAGTG | 4 cut(s) | 506, 534, 679, 1845 |
| CaiI | CAGNNNCTG | 1 cut(s) | 728 |
| CciI | TCATGA | 1 cut(s) | 1671 |
| CfoI | GCGC | 1 cut(s) | 1026 |
| Cfr10I | RCCGGY | 2 cut(s) | 1768, 2275 |
| Cfr13I | GGNCC | 6 cut(s) | 60, 503, 583, 922, 2175, 2238 |
| Cfr42I | CCGCGG | 1 cut(s) | 297 |
| CseI | GACGC | 2 cut(s) | 661, 1237 |
| Csp6I | GTAC | 8 cut(s) | 375, 553, 1183, 1279, 1321, 1464, 1850, 2024 |
| CviQI | GTAC | 8 cut(s) | 375, 553, 1183, 1279, 1321, 1464, 1850, 2024 |
| DdeI | CTNAG | 9 cut(s) | 139, 173, 565, 812, 914, 1053, 1586, 1782, 2027 |
| EaeI | YGGCCR | 3 cut(s) | 1067, 1756, 2193 |
| Eam1104I | CTCTTC | 2 cut(s) | 1487, 1923 |
| EarI | CTCTTC | 2 cut(s) | 1487, 1923 |
| EciI | GGCGGA | 1 cut(s) | 483 |
| Eco130I | CCWWGG | 3 cut(s) | 1252, 2079, 2196 |
| Eco147I | AGGCCT | 1 cut(s) | 1635 |
| Eco31I | GGTCTC | 1 cut(s) | 10 |
| Eco47I | GGWCC | 3 cut(s) | 503, 922, 2175 |
| Eco81I | CCTNAGG | 1 cut(s) | 1782 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2175 |
| EcoT14I | CCWWGG | 3 cut(s) | 1252, 2079, 2196 |
| EcoT22I | ATGCAT | 2 cut(s) | 1366, 1668 |
| ErhI | CCWWGG | 3 cut(s) | 1252, 2079, 2196 |
| Esp3I | CGTCTC | 1 cut(s) | 2265 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 177, 209 |
| FaqI | GGGAC | 2 cut(s) | 1925, 2161 |
| FauI | CCCGC | 1 cut(s) | 301 |
| FbaI | TGATCA | 1 cut(s) | 1659 |
| Fnu4HI | GCNGC | 2 cut(s) | 170, 1022 |
| FokI | GGATG | 3 cut(s) | 241, 614, 1742 |
| Fsp4HI | GCNGC | 2 cut(s) | 170, 1022 |
| FspBI | CTAG | 7 cut(s) | 158, 531, 561, 623, 1079, 1641, 2117 |
| GlaI | GCGC | 1 cut(s) | 1025 |
| GluI | GCNGC | 2 cut(s) | 170, 1022 |
| GsuI | CTGGAG | 2 cut(s) | 122, 1748 |
| HaeII | RGCGCY | 1 cut(s) | 1027 |
| HapII | CCGG | 8 cut(s) | 30, 63, 275, 648, 1027, 1769, 2264, 2276 |
| HgaI | GACGC | 2 cut(s) | 661, 1237 |
| HhaI | GCGC | 1 cut(s) | 1026 |
| Hin1I | GRCGYC | 1 cut(s) | 1248 |
| Hin6I | GCGC | 1 cut(s) | 1024 |
| HinP1I | GCGC | 1 cut(s) | 1024 |
| HindIII | AAGCTT | 1 cut(s) | 92 |
| HinfI | GANTC | 2 cut(s) | 1297, 1573 |
| HpaII | CCGG | 8 cut(s) | 30, 63, 275, 648, 1027, 1769, 2264, 2276 |
| HphI | GGTGA | 4 cut(s) | 282, 883, 1883, 2068 |
| Hpy166II | GTNNAC | 9 cut(s) | 422, 437, 485, 503, 541, 985, 1279, 1466, 1774 |
| Hpy188I | TCNGA | 7 cut(s) | 7, 142, 334, 724, 917, 1310, 1927 |
| Hpy188III | TCNNGA | 9 cut(s) | 101, 275, 765, 934, 1672, 1781, 1901, 1981, 2005 |
| Hpy8I | GTNNAC | 9 cut(s) | 422, 437, 485, 503, 541, 985, 1279, 1466, 1774 |
| Hpy99I | CGWCG | 1 cut(s) | 1970 |
| HpyAV | CCTTC | 8 cut(s) | 145, 334, 648, 686, 746, 973, 1798, 1868 |
| HpyCH4III | ACNGT | 8 cut(s) | 46, 538, 683, 940, 1406, 1849, 2087, 2259 |
| HpyCH4IV | ACGT | 1 cut(s) | 748 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 178, 465, 669, 1021, 1235, 1641 |
| HpyF3I | CTNAG | 9 cut(s) | 139, 173, 565, 812, 914, 1053, 1586, 1782, 2027 |
| HpySE526I | ACGT | 1 cut(s) | 748 |
| Hsp92I | GRCGYC | 1 cut(s) | 1248 |
| HspAI | GCGC | 1 cut(s) | 1024 |
| Kpn2I | TCCGGA | 1 cut(s) | 274 |
| KpnI | GGTACC | 1 cut(s) | 378 |
| KroI | GCCGGC | 1 cut(s) | 2275 |
| KroNI | GCCGGC | 1 cut(s) | 2277 |
| Ksp22I | TGATCA | 1 cut(s) | 1659 |
| KspI | CCGCGG | 1 cut(s) | 297 |
| LguI | GCTCTTC | 1 cut(s) | 1923 |
| LmnI | GCTCC | 6 cut(s) | 154, 456, 516, 665, 1310, 2113 |
| Lsp1109I | GCAGC | 1 cut(s) | 1033 |
| LweI | GCATC | 2 cut(s) | 208, 1955 |
| MaeI | CTAG | 7 cut(s) | 158, 531, 561, 623, 1079, 1641, 2117 |
| MaeII | ACGT | 1 cut(s) | 748 |
| MaeIII | GTNAC | 8 cut(s) | 32, 52, 262, 889, 940, 951, 1415, 1432 |
| MbiI | CCGCTC | 1 cut(s) | 169 |
| MfeI | CAATTG | 1 cut(s) | 1939 |
| MflI | RGATCY | 1 cut(s) | 865 |
| MhlI | GDGCHC | 2 cut(s) | 1308, 1776 |
| MlsI | TGGCCA | 3 cut(s) | 1069, 1758, 2195 |
| MluI | ACGCGT | 1 cut(s) | 349 |
| MluNI | TGGCCA | 3 cut(s) | 1069, 1758, 2195 |
| MlyI | GAGTC | 2 cut(s) | 1306, 1582 |
| MmeI | TCCRAC | 4 cut(s) | 128, 434, 538, 1684 |
| Mox20I | TGGCCA | 3 cut(s) | 1069, 1758, 2195 |
| Mph1103I | ATGCAT | 2 cut(s) | 1366, 1668 |
| MroI | TCCGGA | 1 cut(s) | 274 |
| MroNI | GCCGGC | 1 cut(s) | 2275 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1932 |
| MscI | TGGCCA | 3 cut(s) | 1069, 1758, 2195 |
| MslI | CAYNNNNRTG | 3 cut(s) | 383, 591, 623 |
| Msp20I | TGGCCA | 3 cut(s) | 1069, 1758, 2195 |
| MspA1I | CMGCKG | 2 cut(s) | 296, 2191 |
| MspI | CCGG | 8 cut(s) | 30, 63, 275, 648, 1027, 1769, 2264, 2276 |
| MunI | CAATTG | 1 cut(s) | 1939 |
| Mva1269I | GAATGC | 2 cut(s) | 718, 1126 |
| MvnI | CGCG | 2 cut(s) | 296, 351 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 178, 465, 669, 1021, 1235, 1641 |
| NaeI | GCCGGC | 1 cut(s) | 2277 |
| NcoI | CCATGG | 2 cut(s) | 1252, 2196 |
| NgoMIV | GCCGGC | 1 cut(s) | 2275 |
| NheI | GCTAGC | 3 cut(s) | 157, 530, 2116 |
| NlaIV | GGNNCC | 5 cut(s) | 61, 376, 867, 1312, 2177 |
| NmuCI | GTSAC | 4 cut(s) | 889, 940, 1415, 1432 |
| NsiI | ATGCAT | 2 cut(s) | 1366, 1668 |
| NspI | RCATGY | 4 cut(s) | 596, 850, 1183, 1368 |
| PaeI | GCATGC | 1 cut(s) | 850 |
| PagI | TCATGA | 1 cut(s) | 1671 |
| PceI | AGGCCT | 1 cut(s) | 1635 |
| PciSI | GCTCTTC | 1 cut(s) | 1923 |
| PctI | GAATGC | 2 cut(s) | 718, 1126 |
| PdiI | GCCGGC | 1 cut(s) | 2277 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1932 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 714 |
| PkrI | GCNGC | 2 cut(s) | 171, 1023 |
| Ple19I | CGATCG | 1 cut(s) | 959 |
| PleI | GAGTC | 2 cut(s) | 1305, 1581 |
| PpsI | GAGTC | 2 cut(s) | 1305, 1581 |
| PpuMI | RGGWCCY | 1 cut(s) | 2175 |
| PsiI | TTATAA | 1 cut(s) | 1442 |
| Psp5II | RGGWCCY | 1 cut(s) | 2175 |
| PspN4I | GGNNCC | 5 cut(s) | 61, 376, 867, 1312, 2177 |
| PspPI | GGNCC | 6 cut(s) | 60, 503, 583, 922, 2175, 2238 |
| PspPPI | RGGWCCY | 1 cut(s) | 2175 |
| PstNI | CAGNNNCTG | 1 cut(s) | 728 |
| PsuI | RGATCY | 1 cut(s) | 865 |
| PvuI | CGATCG | 1 cut(s) | 959 |
| PvuII | CAGCTG | 1 cut(s) | 2191 |
| RsaI | GTAC | 8 cut(s) | 376, 554, 1184, 1280, 1322, 1465, 1851, 2025 |
| RsaNI | GTAC | 8 cut(s) | 375, 553, 1183, 1279, 1321, 1464, 1850, 2024 |
| RseI | CAYNNNNRTG | 3 cut(s) | 383, 591, 623 |
| SacII | CCGCGG | 1 cut(s) | 297 |
| SapI | GCTCTTC | 1 cut(s) | 1923 |
| SatI | GCNGC | 2 cut(s) | 170, 1022 |
| Sau96I | GGNCC | 6 cut(s) | 60, 503, 583, 922, 2175, 2238 |
| ScaI | AGTACT | 1 cut(s) | 554 |
| SchI | GAGTC | 2 cut(s) | 1306, 1582 |
| SduI | GDGCHC | 2 cut(s) | 1308, 1776 |
| SfaNI | GCATC | 2 cut(s) | 208, 1955 |
| Sfr303I | CCGCGG | 1 cut(s) | 297 |
| SgrBI | CCGCGG | 1 cut(s) | 297 |
| SinI | GGWCC | 3 cut(s) | 503, 922, 2175 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 383, 591, 623 |
| SmlI | CTYRAG | 3 cut(s) | 548, 932, 1901 |
| SmoI | CTYRAG | 3 cut(s) | 548, 932, 1901 |
| SpeI | ACTAGT | 1 cut(s) | 622 |
| SphI | GCATGC | 1 cut(s) | 850 |
| SseBI | AGGCCT | 1 cut(s) | 1635 |
| SsiI | CCGC | 9 cut(s) | 169, 294, 296, 372, 468, 663, 1019, 1057, 2033 |
| SspI | AATATT | 2 cut(s) | 712, 1160 |
| SspMI | CTAG | 7 cut(s) | 158, 531, 561, 623, 1079, 1641, 2117 |
| StuI | AGGCCT | 1 cut(s) | 1635 |
| StyI | CCWWGG | 3 cut(s) | 1252, 2079, 2196 |
| TaaI | ACNGT | 8 cut(s) | 46, 538, 683, 940, 1406, 1849, 2087, 2259 |
| TaiI | ACGT | 1 cut(s) | 751 |
| TaqI | TCGA | 6 cut(s) | 966, 1261, 1369, 1965, 1982, 2013 |
| TatI | WGTACW | 5 cut(s) | 552, 1278, 1463, 1849, 2023 |
| TauI | GCSGC | 1 cut(s) | 172 |
| TscAI | CASTG | 4 cut(s) | 513, 541, 686, 1852 |
| TseFI | GTSAC | 4 cut(s) | 889, 940, 1415, 1432 |
| TseI | GCWGC | 1 cut(s) | 1021 |
| Tsp45I | GTSAC | 4 cut(s) | 889, 940, 1415, 1432 |
| TspDTI | ATGAA | 8 cut(s) | 61, 401, 912, 920, 1660, 1746, 1822, 2228 |
| TspGWI | ACGGA | 4 cut(s) | 858, 1550, 2045, 2132 |
| TspRI | CASTG | 4 cut(s) | 513, 541, 686, 1852 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 714 |
| VneI | GTGCAC | 1 cut(s) | 1772 |
| VpaK11BI | GGWCC | 3 cut(s) | 503, 922, 2175 |
| XapI | RAATTY | 4 cut(s) | 126, 999, 1170, 1884 |
| XceI | RCATGY | 4 cut(s) | 596, 850, 1183, 1368 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1932 |
| XspI | CTAG | 7 cut(s) | 158, 531, 561, 623, 1079, 1641, 2117 |
| ZrmI | AGTACT | 1 cut(s) | 554 |
| Zsp2I | ATGCAT | 2 cut(s) | 1366, 1668 |