Cyclic nucleotide-gated ion channel 1-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 67 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1778 |
| AatII | GACGTC | 1 cut(s) | 2445 |
| Acc16I | TGCGCA | 1 cut(s) | 2708 |
| Acc36I | ACCTGC | 2 cut(s) | 67, 1191 |
| Acc65I | GGTACC | 1 cut(s) | 1532 |
| AccB1I | GGYRCC | 2 cut(s) | 785, 1532 |
| AccI | GTMKAC | 2 cut(s) | 2291, 2302 |
| AccII | CGCG | 2 cut(s) | 1118, 2687 |
| AciI | CCGC | 5 cut(s) | 542, 1118, 2229, 2468, 2687 |
| AclI | AACGTT | 1 cut(s) | 1712 |
| AclWI | GGATC | 7 cut(s) | 133, 167, 239, 252, 2477, 2517, 2556 |
| AcoI | YGGCCR | 3 cut(s) | 3, 1670, 1758 |
| AcsI | RAATTY | 8 cut(s) | 100, 378, 454, 1057, 1168, 1787, 2056, 2562 |
| AcuI | CTGAAG | 3 cut(s) | 42, 176, 198 |
| AcyI | GRCGYC | 1 cut(s) | 2442 |
| AfaI | GTAC | 8 cut(s) | 761, 780, 797, 1534, 1979, 2044, 2117, 2134 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1117 |
| AflII | CTTAAG | 1 cut(s) | 1505 |
| AflIII | ACRYGT | 1 cut(s) | 1820 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2479, 2511 |
| Alw26I | GTCTC | 4 cut(s) | 713, 1202, 1786, 1924 |
| AlwI | GGATC | 7 cut(s) | 133, 167, 239, 252, 2477, 2517, 2556 |
| Ama87I | CYCGRG | 1 cut(s) | 1082 |
| AoxI | GGCC | 4 cut(s) | 3, 1048, 1670, 1758 |
| ApeKI | GCWGC | 4 cut(s) | 50, 53, 320, 2337 |
| ApoI | RAATTY | 8 cut(s) | 100, 378, 454, 1057, 1168, 1787, 2056, 2562 |
| AseI | ATTAAT | 1 cut(s) | 411 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1659 |
| Asp718I | GGTACC | 1 cut(s) | 1532 |
| AspLEI | GCGC | 1 cut(s) | 2709 |
| AspS9I | GGNCC | 2 cut(s) | 1048, 1553 |
| AsuHPI | GGTGA | 2 cut(s) | 2074, 2178 |
| AsuII | TTCGAA | 1 cut(s) | 1020 |
| AsuNHI | GCTAGC | 2 cut(s) | 1945, 2738 |
| AvaI | CYCGRG | 1 cut(s) | 1082 |
| AvaII | GGWCC | 1 cut(s) | 1553 |
| AxyI | CCTNAGG | 1 cut(s) | 549 |
| BaeGI | GKGCMC | 2 cut(s) | 932, 2361 |
| BalI | TGGCCA | 2 cut(s) | 5, 1672 |
| BamHI | GGATCC | 1 cut(s) | 244 |
| BanI | GGYRCC | 2 cut(s) | 785, 1532 |
| BanII | GRGCYC | 1 cut(s) | 2239 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1647, 1679 |
| BauI | CACGAG | 1 cut(s) | 654 |
| BbsI | GAAGAC | 1 cut(s) | 1359 |
| BbvI | GCAGC | 4 cut(s) | 37, 40, 307, 2349 |
| BccI | CCATC | 6 cut(s) | 116, 607, 897, 1095, 1604, 2188 |
| BceAI | ACGGC | 4 cut(s) | 92, 1740, 1773, 2340 |
| BciVI | GTATCC | 1 cut(s) | 1436 |
| BclI | TGATCA | 1 cut(s) | 1320 |
| BcoDI | GTCTC | 4 cut(s) | 713, 1202, 1786, 1924 |
| BfaI | CTAG | 8 cut(s) | 771, 1089, 1911, 1946, 2240, 2465, 2543, 2739 |
| BfmI | CTRYAG | 3 cut(s) | 90, 293, 1184 |
| BfrI | CTTAAG | 1 cut(s) | 1505 |
| BfuAI | ACCTGC | 2 cut(s) | 67, 1191 |
| BfuI | GTATCC | 1 cut(s) | 1436 |
| BglII | AGATCT | 2 cut(s) | 346, 593 |
| BisI | GCNGC | 5 cut(s) | 51, 54, 321, 1119, 2338 |
| BlsI | GCNGC | 5 cut(s) | 52, 55, 322, 1120, 2339 |
| Bme18I | GGWCC | 1 cut(s) | 1553 |
| BmeT110I | CYCGRG | 1 cut(s) | 1082 |
| BmgT120I | GGNCC | 2 cut(s) | 1048, 1553 |
| BmiI | GGNNCC | 5 cut(s) | 246, 787, 1049, 1534, 2236 |
| BmsI | GCATC | 7 cut(s) | 227, 675, 1293, 1351, 1557, 2228, 2390 |
| BmtI | GCTAGC | 2 cut(s) | 1949, 2742 |
| BpiI | GAAGAC | 1 cut(s) | 1359 |
| Bpu14I | TTCGAA | 1 cut(s) | 1020 |
| BpuEI | CTTGAG | 4 cut(s) | 610, 1431, 1527, 2714 |
| BsaAI | YACGTR | 2 cut(s) | 65, 1696 |
| BsaBI | GATNNNNATC | 2 cut(s) | 617, 2004 |
| BsaHI | GRCGYC | 1 cut(s) | 2442 |
| BsaI | GGTCTC | 2 cut(s) | 1202, 1786 |
| BsaJI | CCNNGG | 2 cut(s) | 1395, 1511 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1117 |
| Bse118I | RCCGGY | 1 cut(s) | 2370 |
| Bse1I | ACTGG | 4 cut(s) | 143, 246, 2028, 2109 |
| Bse21I | CCTNAGG | 1 cut(s) | 549 |
| Bse3DI | GCAATG | 1 cut(s) | 765 |
| Bse8I | GATNNNNATC | 2 cut(s) | 617, 2004 |
| BseDI | CCNNGG | 2 cut(s) | 1395, 1511 |
| BseJI | GATNNNNATC | 2 cut(s) | 617, 2004 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1117 |
| BseMI | GCAATG | 1 cut(s) | 765 |
| BseMII | CTCAG | 3 cut(s) | 96, 563, 2103 |
| BseNI | ACTGG | 4 cut(s) | 143, 246, 2028, 2109 |
| BseRI | GAGGAG | 2 cut(s) | 1240, 1929 |
| BseSI | GKGCMC | 2 cut(s) | 932, 2361 |
| BseXI | GCAGC | 4 cut(s) | 37, 40, 307, 2349 |
| BsgI | GTGCAG | 3 cut(s) | 39, 45, 2356 |
| Bsh1236I | CGCG | 2 cut(s) | 1118, 2687 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2572 |
| BshFI | GGCC | 4 cut(s) | 5, 1050, 1672, 1760 |
| BshNI | GGYRCC | 2 cut(s) | 785, 1532 |
| BsiEI | CGRYCG | 1 cut(s) | 2572 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1082 |
| BsiSI | CCGG | 1 cut(s) | 2371 |
| BslFI | GGGAC | 1 cut(s) | 599 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1117 |
| BsmAI | GTCTC | 4 cut(s) | 713, 1202, 1786, 1924 |
| BsmFI | GGGAC | 1 cut(s) | 599 |
| BsmI | GAATGC | 3 cut(s) | 2131, 2148, 2709 |
| BsnI | GGCC | 4 cut(s) | 5, 1050, 1672, 1760 |
| Bso31I | GGTCTC | 2 cut(s) | 1202, 1786 |
| BsoBI | CYCGRG | 1 cut(s) | 1082 |
| Bsp119I | TTCGAA | 1 cut(s) | 1020 |
| Bsp1286I | GDGCHC | 3 cut(s) | 932, 2239, 2361 |
| Bsp19I | CCATGG | 1 cut(s) | 1395 |
| BspACI | CCGC | 5 cut(s) | 542, 1118, 2229, 2468, 2687 |
| BspANI | GGCC | 4 cut(s) | 5, 1050, 1672, 1760 |
| BspCNI | CTCAG | 3 cut(s) | 95, 562, 2104 |
| BspFNI | CGCG | 2 cut(s) | 1118, 2687 |
| BspHI | TCATGA | 3 cut(s) | 169, 621, 883 |
| BspLI | GGNNCC | 5 cut(s) | 246, 787, 1049, 1534, 2236 |
| BspMAI | CTGCAG | 2 cut(s) | 297, 1188 |
| BspMI | ACCTGC | 2 cut(s) | 67, 1191 |
| BspOI | GCTAGC | 2 cut(s) | 1949, 2742 |
| BspPI | GGATC | 7 cut(s) | 133, 167, 239, 252, 2477, 2517, 2556 |
| BspQI | GCTCTTC | 3 cut(s) | 174, 330, 962 |
| BspT104I | TTCGAA | 1 cut(s) | 1020 |
| BspT107I | GGYRCC | 2 cut(s) | 785, 1532 |
| BspTI | CTTAAG | 1 cut(s) | 1505 |
| BspTNI | GGTCTC | 2 cut(s) | 1202, 1786 |
| BsrDI | GCAATG | 1 cut(s) | 765 |
| BsrFI | RCCGGY | 1 cut(s) | 2370 |
| BsrI | ACTGG | 4 cut(s) | 143, 246, 2028, 2109 |
| BssAI | RCCGGY | 1 cut(s) | 2370 |
| BssECI | CCNNGG | 2 cut(s) | 1395, 1511 |
| BssNAI | GTATAC | 1 cut(s) | 2303 |
| BssNI | GRCGYC | 1 cut(s) | 2442 |
| BssSI | CACGAG | 1 cut(s) | 654 |
| BssT1I | CCWWGG | 2 cut(s) | 1395, 1511 |
| Bst1107I | GTATAC | 1 cut(s) | 2303 |
| Bst2BI | CACGAG | 1 cut(s) | 654 |
| Bst4CI | ACNGT | 7 cut(s) | 94, 432, 982, 1532, 1704, 1775, 1984 |
| Bst6I | CTCTTC | 7 cut(s) | 36, 174, 330, 962, 1118, 1230, 1395 |
| BstACI | GRCGYC | 1 cut(s) | 2442 |
| BstAFI | CTTAAG | 1 cut(s) | 1505 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 649 |
| BstBAI | YACGTR | 2 cut(s) | 65, 1696 |
| BstBI | TTCGAA | 1 cut(s) | 1020 |
| BstC8I | GCNNGC | 7 cut(s) | 231, 293, 1052, 1142, 1176, 1947, 2740 |
| BstDEI | CTNAG | 8 cut(s) | 82, 489, 549, 1768, 2071, 2112, 2348, 2714 |
| BstDSI | CCRYGG | 1 cut(s) | 1395 |
| BstFNI | CGCG | 2 cut(s) | 1118, 2687 |
| BstHHI | GCGC | 1 cut(s) | 2709 |
| BstMAI | GTCTC | 4 cut(s) | 713, 1202, 1786, 1924 |
| BstMCI | CGRYCG | 1 cut(s) | 2572 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 59, 649, 1757, 2627 |
| BstNSI | RCATGY | 2 cut(s) | 843, 1824 |
| BstSFI | CTRYAG | 3 cut(s) | 90, 293, 1184 |
| BstSLI | GKGCMC | 2 cut(s) | 932, 2361 |
| BstUI | CGCG | 2 cut(s) | 1118, 2687 |
| BstV1I | GCAGC | 4 cut(s) | 37, 40, 307, 2349 |
| BstV2I | GAAGAC | 1 cut(s) | 1359 |
| BstX2I | RGATCY | 4 cut(s) | 244, 346, 593, 2482 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2617 |
| BstYI | RGATCY | 4 cut(s) | 244, 346, 593, 2482 |
| BstZ17I | GTATAC | 1 cut(s) | 2303 |
| Bsu36I | CCTNAGG | 1 cut(s) | 549 |
| BsuI | GTATCC | 1 cut(s) | 1436 |
| BsuRI | GGCC | 4 cut(s) | 5, 1050, 1672, 1760 |
| BtgI | CCRYGG | 1 cut(s) | 1395 |
| BtsIMutI | CAGTG | 5 cut(s) | 99, 1780, 1840, 1989, 2102 |
| BveI | ACCTGC | 2 cut(s) | 67, 1191 |
| Cac8I | GCNNGC | 7 cut(s) | 231, 293, 1052, 1142, 1176, 1947, 2740 |
| CciI | TCATGA | 3 cut(s) | 169, 621, 883 |
| CfoI | GCGC | 1 cut(s) | 2709 |
| Cfr10I | RCCGGY | 1 cut(s) | 2370 |
| Cfr13I | GGNCC | 2 cut(s) | 1048, 1553 |
| CseI | GACGC | 1 cut(s) | 730 |
| Csp6I | GTAC | 8 cut(s) | 760, 779, 796, 1533, 1978, 2043, 2116, 2133 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2178, 2213 |
| CviQI | GTAC | 8 cut(s) | 760, 779, 796, 1533, 1978, 2043, 2116, 2133 |
| DdeI | CTNAG | 8 cut(s) | 82, 489, 549, 1768, 2071, 2112, 2348, 2714 |
| DraI | TTTAAA | 1 cut(s) | 1462 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1778 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1778 |
| EaeI | YGGCCR | 3 cut(s) | 3, 1670, 1758 |
| Eam1104I | CTCTTC | 7 cut(s) | 36, 174, 330, 962, 1118, 1230, 1395 |
| EarI | CTCTTC | 7 cut(s) | 36, 174, 330, 962, 1118, 1230, 1395 |
| Eco130I | CCWWGG | 2 cut(s) | 1395, 1511 |
| Eco24I | GRGCYC | 1 cut(s) | 2239 |
| Eco31I | GGTCTC | 2 cut(s) | 1202, 1786 |
| Eco32I | GATATC | 1 cut(s) | 283 |
| Eco47I | GGWCC | 1 cut(s) | 1553 |
| Eco57I | CTGAAG | 3 cut(s) | 42, 176, 198 |
| Eco81I | CCTNAGG | 1 cut(s) | 549 |
| Eco88I | CYCGRG | 1 cut(s) | 1082 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1048 |
| EcoRI | GAATTC | 1 cut(s) | 1787 |
| EcoRV | GATATC | 1 cut(s) | 283 |
| EcoT14I | CCWWGG | 2 cut(s) | 1395, 1511 |
| EcoT22I | ATGCAT | 1 cut(s) | 841 |
| EcoT38I | GRGCYC | 1 cut(s) | 2239 |
| ErhI | CCWWGG | 2 cut(s) | 1395, 1511 |
| FaqI | GGGAC | 1 cut(s) | 599 |
| FauNDI | CATATG | 1 cut(s) | 791 |
| FbaI | TGATCA | 1 cut(s) | 1320 |
| FblI | GTMKAC | 2 cut(s) | 2291, 2302 |
| Fnu4HI | GCNGC | 5 cut(s) | 51, 54, 321, 1119, 2338 |
| FriOI | GRGCYC | 1 cut(s) | 2239 |
| Fsp4HI | GCNGC | 5 cut(s) | 51, 54, 321, 1119, 2338 |
| FspBI | CTAG | 8 cut(s) | 771, 1089, 1911, 1946, 2240, 2465, 2543, 2739 |
| FspI | TGCGCA | 1 cut(s) | 2708 |
| GlaI | GCGC | 1 cut(s) | 2708 |
| GluI | GCNGC | 5 cut(s) | 51, 54, 321, 1119, 2338 |
| HaeIII | GGCC | 4 cut(s) | 5, 1050, 1672, 1760 |
| HapII | CCGG | 1 cut(s) | 2371 |
| HgaI | GACGC | 1 cut(s) | 730 |
| HhaI | GCGC | 1 cut(s) | 2709 |
| Hin1I | GRCGYC | 1 cut(s) | 2442 |
| Hin6I | GCGC | 1 cut(s) | 2707 |
| HinP1I | GCGC | 1 cut(s) | 2707 |
| HincII | GTYRAC | 3 cut(s) | 1008, 1443, 2292 |
| HindII | GTYRAC | 3 cut(s) | 1008, 1443, 2292 |
| HinfI | GANTC | 9 cut(s) | 74, 503, 625, 697, 748, 1444, 1881, 1917, 2414 |
| HpaII | CCGG | 1 cut(s) | 2371 |
| HphI | GGTGA | 2 cut(s) | 2074, 2178 |
| Hpy99I | CGWCG | 1 cut(s) | 1708 |
| HpyCH4III | ACNGT | 7 cut(s) | 94, 432, 982, 1532, 1704, 1775, 1984 |
| HpyCH4IV | ACGT | 6 cut(s) | 64, 762, 1666, 1695, 1712, 2442 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 59, 649, 1757, 2627 |
| HpyF3I | CTNAG | 8 cut(s) | 82, 489, 549, 1768, 2071, 2112, 2348, 2714 |
| HpySE526I | ACGT | 6 cut(s) | 64, 762, 1666, 1695, 1712, 2442 |
| Hsp92I | GRCGYC | 1 cut(s) | 2442 |
| HspAI | GCGC | 1 cut(s) | 2707 |
| KpnI | GGTACC | 1 cut(s) | 1536 |
| Ksp22I | TGATCA | 1 cut(s) | 1320 |
| LguI | GCTCTTC | 3 cut(s) | 174, 330, 962 |
| LmnI | GCTCC | 3 cut(s) | 2234, 2470, 2689 |
| Lsp1109I | GCAGC | 4 cut(s) | 37, 40, 307, 2349 |
| LweI | GCATC | 7 cut(s) | 227, 675, 1293, 1351, 1557, 2228, 2390 |
| MaeI | CTAG | 8 cut(s) | 771, 1089, 1911, 1946, 2240, 2465, 2543, 2739 |
| MaeII | ACGT | 6 cut(s) | 64, 762, 1666, 1695, 1712, 2442 |
| MaeIII | GTNAC | 5 cut(s) | 340, 860, 1969, 2202, 2513 |
| MfeI | CAATTG | 2 cut(s) | 1033, 2097 |
| MflI | RGATCY | 4 cut(s) | 244, 346, 593, 2482 |
| MhlI | GDGCHC | 3 cut(s) | 932, 2239, 2361 |
| MlsI | TGGCCA | 2 cut(s) | 5, 1672 |
| MluNI | TGGCCA | 2 cut(s) | 5, 1672 |
| MlyI | GAGTC | 4 cut(s) | 512, 691, 1438, 1926 |
| MmeI | TCCRAC | 2 cut(s) | 18, 462 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 1672 |
| Mph1103I | ATGCAT | 1 cut(s) | 841 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1659 |
| MscI | TGGCCA | 2 cut(s) | 5, 1672 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 1672 |
| MspCI | CTTAAG | 1 cut(s) | 1505 |
| MspI | CCGG | 1 cut(s) | 2371 |
| MunI | CAATTG | 2 cut(s) | 1033, 2097 |
| Mva1269I | GAATGC | 3 cut(s) | 2131, 2148, 2709 |
| MvnI | CGCG | 2 cut(s) | 1118, 2687 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 59, 649, 1757, 2627 |
| NcoI | CCATGG | 1 cut(s) | 1395 |
| NdeI | CATATG | 1 cut(s) | 791 |
| NheI | GCTAGC | 2 cut(s) | 1945, 2738 |
| NlaIV | GGNNCC | 5 cut(s) | 246, 787, 1049, 1534, 2236 |
| NmuCI | GTSAC | 2 cut(s) | 340, 2513 |
| NsbI | TGCGCA | 1 cut(s) | 2708 |
| NsiI | ATGCAT | 1 cut(s) | 841 |
| NspI | RCATGY | 2 cut(s) | 843, 1824 |
| NspV | TTCGAA | 1 cut(s) | 1020 |
| PacI | TTAATTAA | 1 cut(s) | 411 |
| PaeR7I | CTCGAG | 1 cut(s) | 1082 |
| PagI | TCATGA | 3 cut(s) | 169, 621, 883 |
| PaqCI | CACCTGC | 1 cut(s) | 67 |
| PciI | ACATGT | 1 cut(s) | 1820 |
| PciSI | GCTCTTC | 3 cut(s) | 174, 330, 962 |
| PctI | GAATGC | 3 cut(s) | 2131, 2148, 2709 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1659 |
| PfeI | GAWTC | 5 cut(s) | 74, 625, 748, 1881, 2414 |
| PkrI | GCNGC | 5 cut(s) | 52, 55, 322, 1120, 2339 |
| Ple19I | CGATCG | 1 cut(s) | 2572 |
| PleI | GAGTC | 4 cut(s) | 511, 691, 1438, 1925 |
| PpsI | GAGTC | 4 cut(s) | 511, 691, 1438, 1925 |
| Ppu21I | YACGTR | 2 cut(s) | 65, 1696 |
| PscI | ACATGT | 1 cut(s) | 1820 |
| PshBI | ATTAAT | 1 cut(s) | 411 |
| Psp1406I | AACGTT | 1 cut(s) | 1712 |
| PspN4I | GGNNCC | 5 cut(s) | 246, 787, 1049, 1534, 2236 |
| PspPI | GGNCC | 2 cut(s) | 1048, 1553 |
| PspXI | VCTCGAGB | 1 cut(s) | 1082 |
| PstI | CTGCAG | 2 cut(s) | 297, 1188 |
| PsuI | RGATCY | 4 cut(s) | 244, 346, 593, 2482 |
| PvuI | CGATCG | 1 cut(s) | 2572 |
| RsaI | GTAC | 8 cut(s) | 761, 780, 797, 1534, 1979, 2044, 2117, 2134 |
| RsaNI | GTAC | 8 cut(s) | 760, 779, 796, 1533, 1978, 2043, 2116, 2133 |
| SalI | GTCGAC | 1 cut(s) | 2290 |
| SapI | GCTCTTC | 3 cut(s) | 174, 330, 962 |
| SatI | GCNGC | 5 cut(s) | 51, 54, 321, 1119, 2338 |
| Sau96I | GGNCC | 2 cut(s) | 1048, 1553 |
| SchI | GAGTC | 4 cut(s) | 512, 691, 1438, 1926 |
| SduI | GDGCHC | 3 cut(s) | 932, 2239, 2361 |
| SfaNI | GCATC | 7 cut(s) | 227, 675, 1293, 1351, 1557, 2228, 2390 |
| SfcI | CTRYAG | 3 cut(s) | 90, 293, 1184 |
| Sfr274I | CTCGAG | 1 cut(s) | 1082 |
| SfuI | TTCGAA | 1 cut(s) | 1020 |
| SinI | GGWCC | 1 cut(s) | 1553 |
| SlaI | CTCGAG | 1 cut(s) | 1082 |
| SmlI | CTYRAG | 6 cut(s) | 589, 1082, 1446, 1505, 1542, 2693 |
| SmoI | CTYRAG | 6 cut(s) | 589, 1082, 1446, 1505, 1542, 2693 |
| SsiI | CCGC | 5 cut(s) | 542, 1118, 2229, 2468, 2687 |
| SspI | AATATT | 4 cut(s) | 1458, 1802, 2583, 2703 |
| SspMI | CTAG | 8 cut(s) | 771, 1089, 1911, 1946, 2240, 2465, 2543, 2739 |
| StyI | CCWWGG | 2 cut(s) | 1395, 1511 |
| TaaI | ACNGT | 7 cut(s) | 94, 432, 982, 1532, 1704, 1775, 1984 |
| TaiI | ACGT | 6 cut(s) | 67, 765, 1669, 1698, 1715, 2445 |
| TaqII | GACCGA | 1 cut(s) | 955 |
| TatI | WGTACW | 3 cut(s) | 778, 2115, 2132 |
| TauI | GCSGC | 1 cut(s) | 1121 |
| TfiI | GAWTC | 5 cut(s) | 74, 625, 748, 1881, 2414 |
| TscAI | CASTG | 5 cut(s) | 99, 1780, 1840, 1989, 2109 |
| TseFI | GTSAC | 2 cut(s) | 340, 2513 |
| TseI | GCWGC | 4 cut(s) | 50, 53, 320, 2337 |
| Tsp45I | GTSAC | 2 cut(s) | 340, 2513 |
| TspGWI | ACGGA | 1 cut(s) | 1599 |
| TspRI | CASTG | 5 cut(s) | 99, 1780, 1840, 1989, 2109 |
| Vha464I | CTTAAG | 1 cut(s) | 1505 |
| VpaK11BI | GGWCC | 1 cut(s) | 1553 |
| VspI | ATTAAT | 1 cut(s) | 411 |
| XapI | RAATTY | 8 cut(s) | 100, 378, 454, 1057, 1168, 1787, 2056, 2562 |
| XbaI | TCTAGA | 2 cut(s) | 1910, 2542 |
| XceI | RCATGY | 2 cut(s) | 843, 1824 |
| XhoI | CTCGAG | 1 cut(s) | 1082 |
| XmiI | GTMKAC | 2 cut(s) | 2291, 2302 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1659 |
| XspI | CTAG | 8 cut(s) | 771, 1089, 1911, 1946, 2240, 2465, 2543, 2739 |
| ZraI | GACGTC | 1 cut(s) | 2443 |
| Zsp2I | ATGCAT | 1 cut(s) | 841 |