Rh1CG422500

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
68191288 .. 68193955
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG422500.1

Sequence Viewer

Length: 1947 bp
ATGTCTAACAATGAAGTAGCTCTAAATGTAGAGCAGGAAGAAGAGACAACTCAGAGCAAGTTAGAGACTACTGCAACAGAGAAATCTACCCCAAAAGATGGAGGAGATGCAAGAGATACAAGAAAAATTAAAAGATGTTTATCCTTTAACACAATTTTCGATCCAAAAGGGAAGTTCCTTCTGACGTGGAACAACATATTTGTAGTATCTTGTGTGTTTGCTGTCTCCTTTGATCCTTTGTTCTTCTACATTCCGATCATTAACCAGAAGAGGAAGTGTCTATATTTTGACACAAGGTTGAAGACCATTGCCCTCATCTTAAGGTTACTCACAGATCAATTCTACATTGCGGACATTATTATGCGAATTTTGATTAGTATACTTAAAACCAAGTCATCCAAGGCTTCTGGGGTGACCAAAACACAAGCGAAAGCTCCTAATTCGAAAGGGAATATAACAGTTGAGACTGTTTTTGCAATAGCTAAGAGGGCTTGGGAGAAAGCTAACAGATCATACATCCTCATTGACATTTTAGCTATTCTTCCCATACCCCAGGTGGGAATGTTCGTTTTCTTTTCGAAAATGAAGGGTCCAAGATTTTCGATAGAAAGGAAGCTTTTCGACACACTTATTTTGTTCCAGTTTGTCCCACGCGTTCTTCCCGTTTACTTATTGTGCAGAGAACGTAAGAAAACTCTTAATAAAGCAGGCATGTGGACAAAAGGTGTTTTCAATTTCTTTCTATACATCCTTGCAAGTCATGCACTTGGAGCTCTTTGGTACTTATTTGCTATTCAACGGGAGATGGATTGCTGGCATTATGTTTGCCAACGTCACAAGGGATGTCAACCTAGTACCTTTAGTTGTAGTGAACGAGGAGATAGATTGAGAACTATCCCATCGTTAGACAAAGAATGTCCGATAAACCTACCGGAAGAAATGAAAGGAAATGCCTTTAATTTTGGTATATTTGCTGATGCGCTTGATTCCGGCCTAGTGCAGTCGACTGATTTTCCTCAAAAATTCTTGAATTGTTTCTGGTGGGGGCTGCGAAATCTGAGGTTTGATAATATTGCTTGTTCTACATATTTGCAGTTTGCAACTACAAGATCAGAGAAGATTAGACGGAAGATGAAAACGAAAAATTTAGAGGTTGATTTGTGGCTATCTAGAAAAGGACTGCCTAGCAATTTGAAGGTAGTGATAATGCAATTCATACAACAAAAACTTGAACAGAACAATGATGTTCAAGTTGAGAACATCCTCTCTGTTCTTCCTTCAGCACATAGTAAATATATCTTGCGGTATCTTCGTTTGGCTACACTCAAGAAAGTGCCAATGCTTCAAACTATGGGGGTAGCACTGCTAAAAGCAATCTGTGAGCACCTCGAGCCAGTGGACTATCCTGAGGACAGTTGCATTATTCAAGAGGGACAGCGACTCCATAAGATGATTTTCATCACACATGGCACAGTACATACCTACAAGACCAATGGTAAAGGTGGAAAGATTGGTTCCGAGTTTCTTGAGAAAGGGGACTTCTATGGTTCAGAAGAACTTCTCAATTGGGCATCAAAGTTTAGCTCCTCCAACGACTTACCAATCTCGACCAGAATGGTTAAGCCTGTCACGAAAGTCGAAGTTTTTGAGCTGAGCACGGACGACTTGAAGAGTATAGGCATTAAGTACTGGTGGAATTTCACCAAGAACAAGGATCCAAAGGATTTCGACCAGTCTCTGTTGGAGGAGTTTGCAGTATCTTCCATAGAAAAGGAAATCCGTCGCCGCAGGCAAGCGAAAAAGAAGCGTACAATAAGTTCTCTCAATAAGTTGTCTACTAGTCAGGGTAGTGCTAGCAATAAGTGGCAACGGCTCATCAGCAAGGTTACGAGGGATCAGATACCTTCACCAGTTGGTGCTCTAGATGGCAAGCAACTAGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

648

Amino Acids

74.35

Weight (kDa)

9.6

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cNMP_binding PF00027 466 - 525 7e-07 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 98
AccI GTMKAC 3 cut(s) 379, 1004, 1835
AccII CGCG 1 cut(s) 654
AciI CCGC 3 cut(s) 350, 1303, 1786
AclWI GGATC 5 cut(s) 155, 227, 1709, 1722, 1902
AcsI RAATTY 4 cut(s) 366, 1022, 1144, 1696
AcuI CTGAAG 1 cut(s) 1263
AfaI GTAC 5 cut(s) 782, 856, 1476, 1688, 1810
AfiI CCNNNNNNNGG 2 cut(s) 98, 557
AflII CTTAAG 1 cut(s) 319
AflIII ACRYGT 1 cut(s) 652
AhlI ACTAGT 1 cut(s) 1838
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 552
Alw21I GWGCWC 4 cut(s) 775, 1386, 1658, 1921
Alw26I GTCTC 5 cut(s) 38, 59, 229, 458, 1740
AlwI GGATC 5 cut(s) 155, 227, 1709, 1722, 1902
AlwNI CAGNNNCTG 1 cut(s) 1738
Ama87I CYCGRG 1 cut(s) 1388
AoxI GGCC 1 cut(s) 991
ApeKI GCWGC 1 cut(s) 1048
ApoI RAATTY 4 cut(s) 366, 1022, 1144, 1696
Asp700I GAANNNNTTC 3 cut(s) 617, 1034, 1557
AspLEI GCGC 1 cut(s) 982
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 3 cut(s) 424, 1693, 1899
AsuII TTCGAA 2 cut(s) 443, 578
AsuNHI GCTAGC 2 cut(s) 1853, 1940
AvaI CYCGRG 1 cut(s) 1388
AvaII GGWCC 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 1407
BamHI GGATCC 1 cut(s) 1714
BanII GRGCYC 1 cut(s) 775
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 4 cut(s) 775, 1386, 1658, 1921
BbvI GCAGC 1 cut(s) 1035
BccI CCATC 4 cut(s) 92, 799, 907, 1919
BceAI ACGGC 1 cut(s) 1886
BciT130I CCWGG 1 cut(s) 554
BcoDI GTCTC 5 cut(s) 38, 59, 229, 458, 1740
BcuI ACTAGT 1 cut(s) 1838
BfaI CTAG 9 cut(s) 852, 995, 1170, 1185, 1839, 1854, 1922, 1937, 1941
BfrI CTTAAG 1 cut(s) 319
BisI GCNGC 2 cut(s) 1049, 1786
BlpI GCTNAGC 1 cut(s) 1652
BlsI GCNGC 2 cut(s) 1050, 1787
BmcAI AGTACT 1 cut(s) 1688
Bme1390I CCNGG 1 cut(s) 554
Bme18I GGWCC 1 cut(s) 590
BmeT110I CYCGRG 1 cut(s) 1388
BmgBI CACGTC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 3 cut(s) 591, 1516, 1716
BmrFI CCNGG 1 cut(s) 554
BmsI GCATC 3 cut(s) 97, 967, 1580
BmtI GCTAGC 2 cut(s) 1857, 1944
BpiI GAAGAC 1 cut(s) 308
Bpu1102I GCTNAGC 1 cut(s) 1652
Bpu14I TTCGAA 2 cut(s) 443, 578
BpuEI CTTGAG 2 cut(s) 1310, 1547
BsaBI GATNNNNATC 2 cut(s) 139, 1457
BsaJI CCNNGG 2 cut(s) 399, 552
BsaWI WCCGGW 1 cut(s) 931
BsaXI ACNNNNNCTCC 2 cut(s) 1425, 1455
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 557
Bse1I ACTGG 5 cut(s) 640, 1394, 1694, 1732, 1910
Bse21I CCTNAGG 1 cut(s) 1407
Bse3DI GCAATG 2 cut(s) 306, 345
Bse8I GATNNNNATC 2 cut(s) 139, 1457
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 2 cut(s) 399, 552
BseGI GGATG 5 cut(s) 395, 516, 747, 848, 1260
BseJI GATNNNNATC 2 cut(s) 139, 1457
BseLI CCNNNNNNNGG 2 cut(s) 98, 557
BseMI GCAATG 2 cut(s) 306, 345
BseMII CTCAG 4 cut(s) 65, 1049, 1398, 1643
BseNI ACTGG 5 cut(s) 640, 1394, 1694, 1732, 1910
BseRI GAGGAG 4 cut(s) 117, 891, 1576, 1760
BseXI GCAGC 1 cut(s) 1035
BsgI GTGCAG 2 cut(s) 697, 1019
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 1 cut(s) 993
BsiHKAI GWGCWC 4 cut(s) 775, 1386, 1658, 1921
BsiHKCI CYCGRG 1 cut(s) 1388
BsiSI CCGG 2 cut(s) 932, 990
BslFI GGGAC 3 cut(s) 632, 1446, 1550
BslI CCNNNNNNNGG 2 cut(s) 98, 557
BsmAI GTCTC 5 cut(s) 38, 59, 229, 458, 1740
BsmFI GGGAC 3 cut(s) 632, 1446, 1550
BsnI GGCC 1 cut(s) 993
BsoBI CYCGRG 1 cut(s) 1388
Bsp119I TTCGAA 2 cut(s) 443, 578
Bsp1286I GDGCHC 4 cut(s) 775, 1386, 1658, 1921
Bsp143I GATC 8 cut(s) 160, 232, 255, 334, 509, 1109, 1714, 1894
Bsp1720I GCTNAGC 1 cut(s) 1652
BspACI CCGC 3 cut(s) 350, 1303, 1786
BspANI GGCC 1 cut(s) 993
BspCNI CTCAG 4 cut(s) 64, 1050, 1399, 1644
BspFNI CGCG 1 cut(s) 654
BspLI GGNNCC 3 cut(s) 591, 1516, 1716
BspOI GCTAGC 2 cut(s) 1857, 1944
BspPI GGATC 5 cut(s) 155, 227, 1709, 1722, 1902
BspT104I TTCGAA 2 cut(s) 443, 578
BspTI CTTAAG 1 cut(s) 319
BsrDI GCAATG 2 cut(s) 306, 345
BsrI ACTGG 5 cut(s) 640, 1394, 1694, 1732, 1910
BssECI CCNNGG 2 cut(s) 399, 552
BssMI GATC 8 cut(s) 160, 232, 255, 334, 509, 1109, 1714, 1894
BssNAI GTATAC 1 cut(s) 380
BssT1I CCWWGG 1 cut(s) 399
Bst1107I GTATAC 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 4 cut(s) 460, 469, 1415, 1474
Bst6I CTCTTC 3 cut(s) 36, 263, 1664
BstAFI CTTAAG 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBI TTCGAA 2 cut(s) 443, 578
BstC8I GCNNGC 7 cut(s) 709, 815, 1790, 1794, 1855, 1931, 1942
BstDEI CTNAG 5 cut(s) 51, 483, 1058, 1407, 1652
BstEII GGTNACC 1 cut(s) 412
BstF5I GGATG 5 cut(s) 395, 516, 747, 848, 1260
BstFNI CGCG 1 cut(s) 654
BstHHI GCGC 1 cut(s) 982
BstKTI GATC 8 cut(s) 163, 235, 258, 337, 512, 1112, 1717, 1897
BstMAI GTCTC 5 cut(s) 38, 59, 229, 458, 1740
BstMBI GATC 8 cut(s) 160, 232, 255, 334, 509, 1109, 1714, 1894
BstMWI GCNNNNNNNGC 4 cut(s) 488, 761, 770, 1390
BstNI CCWGG 1 cut(s) 554
BstNSI RCATGY 1 cut(s) 715
BstPI GGTNACC 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 552
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 1 cut(s) 1035
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 1714
BstYI RGATCY 1 cut(s) 1714
BstZ17I GTATAC 1 cut(s) 380
Bsu36I CCTNAGG 1 cut(s) 1407
BsuRI GGCC 1 cut(s) 993
BtrI CACGTC 1 cut(s) 186
BtsCI GGATG 5 cut(s) 395, 516, 747, 848, 1260
BtsI GCAGTG 1 cut(s) 1361
BtsIMutI CAGTG 2 cut(s) 1361, 1401
Cac8I GCNNGC 7 cut(s) 709, 815, 1790, 1794, 1855, 1931, 1942
CaiI CAGNNNCTG 1 cut(s) 1738
CfoI GCGC 1 cut(s) 982
Cfr13I GGNCC 1 cut(s) 590
Csp6I GTAC 5 cut(s) 781, 855, 1475, 1687, 1809
CviAII CATG 3 cut(s) 712, 761, 1466
CviQI GTAC 5 cut(s) 781, 855, 1475, 1687, 1809
DdeI CTNAG 5 cut(s) 51, 483, 1058, 1407, 1652
DpnI GATC 8 cut(s) 162, 234, 257, 336, 511, 1111, 1716, 1896
DpnII GATC 8 cut(s) 160, 232, 255, 334, 509, 1109, 1714, 1894
Eam1104I CTCTTC 3 cut(s) 36, 263, 1664
EarI CTCTTC 3 cut(s) 36, 263, 1664
Ecl136II GAGCTC 1 cut(s) 773
Eco130I CCWWGG 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 775
Eco47I GGWCC 1 cut(s) 590
Eco53kI GAGCTC 1 cut(s) 773
Eco57I CTGAAG 1 cut(s) 1263
Eco81I CCTNAGG 1 cut(s) 1407
Eco88I CYCGRG 1 cut(s) 1388
Eco91I GGTNACC 1 cut(s) 412
EcoICRI GAGCTC 1 cut(s) 773
EcoO65I GGTNACC 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 775
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 3 cut(s) 715, 764, 1469
FaqI GGGAC 3 cut(s) 632, 1446, 1550
FatI CATG 3 cut(s) 711, 760, 1465
FblI GTMKAC 3 cut(s) 379, 1004, 1835
Fnu4HI GCNGC 2 cut(s) 1049, 1786
FokI GGATG 5 cut(s) 382, 503, 734, 855, 1247
FriOI GRGCYC 1 cut(s) 775
Fsp4HI GCNGC 2 cut(s) 1049, 1786
FspBI CTAG 9 cut(s) 852, 995, 1170, 1185, 1839, 1854, 1922, 1937, 1941
GlaI GCGC 1 cut(s) 981
GluI GCNGC 2 cut(s) 1049, 1786
HaeIII GGCC 1 cut(s) 993
HapII CCGG 2 cut(s) 932, 990
HhaI GCGC 1 cut(s) 982
Hin1II CATG 3 cut(s) 715, 764, 1469
Hin6I GCGC 1 cut(s) 980
HinP1I GCGC 1 cut(s) 980
HincII GTYRAC 2 cut(s) 848, 1005
HindII GTYRAC 2 cut(s) 848, 1005
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 2 cut(s) 986, 1440
HpaII CCGG 2 cut(s) 932, 990
HphI GGTGA 3 cut(s) 424, 1693, 1899
Hpy166II GTNNAC 8 cut(s) 380, 667, 717, 848, 872, 1005, 1399, 1836
Hpy188I TCNGA 9 cut(s) 54, 183, 255, 921, 1059, 1114, 1519, 1552, 1899
Hpy188III TCNNGA 9 cut(s) 1027, 1170, 1327, 1406, 1427, 1526, 1606, 1630, 1922
Hpy8I GTNNAC 8 cut(s) 380, 667, 717, 848, 872, 1005, 1399, 1836
Hpy99I CGWCG 1 cut(s) 1785
HpyAV CCTTC 5 cut(s) 188, 580, 1189, 1287, 1914
HpyCH4III ACNGT 4 cut(s) 460, 469, 1415, 1474
HpyCH4IV ACGT 3 cut(s) 185, 685, 832
HpyF10VI GCNNNNNNNGC 4 cut(s) 488, 761, 770, 1390
HpyF3I CTNAG 5 cut(s) 51, 483, 1058, 1407, 1652
HpySE526I ACGT 3 cut(s) 185, 685, 832
Hsp92II CATG 3 cut(s) 715, 764, 1469
HspAI GCGC 1 cut(s) 980
Kzo9I GATC 8 cut(s) 160, 232, 255, 334, 509, 1109, 1714, 1894
LmnI GCTCC 3 cut(s) 439, 770, 1589
Lsp1109I GCAGC 1 cut(s) 1035
LweI GCATC 3 cut(s) 97, 967, 1580
MaeI CTAG 9 cut(s) 852, 995, 1170, 1185, 1839, 1854, 1922, 1937, 1941
MaeII ACGT 3 cut(s) 185, 685, 832
MaeIII GTNAC 5 cut(s) 324, 412, 833, 1627, 1885
MalI GATC 8 cut(s) 162, 234, 257, 336, 511, 1111, 1716, 1896
MboI GATC 8 cut(s) 160, 232, 255, 334, 509, 1109, 1714, 1894
MfeI CAATTG 1 cut(s) 1564
MflI RGATCY 1 cut(s) 1714
MhlI GDGCHC 4 cut(s) 775, 1386, 1658, 1921
MluI ACGCGT 1 cut(s) 652
MlyI GAGTC 1 cut(s) 1434
MmeI TCCRAC 2 cut(s) 1614, 1722
MroXI GAANNNNTTC 3 cut(s) 617, 1034, 1557
MseI TTAA 9 cut(s) 129, 147, 261, 320, 384, 699, 957, 1620, 1683
MslI CAYNNNNRTG 1 cut(s) 359
MspCI CTTAAG 1 cut(s) 319
MspI CCGG 2 cut(s) 932, 990
MspR9I CCNGG 1 cut(s) 554
MunI CAATTG 1 cut(s) 1564
MvaI CCWGG 1 cut(s) 554
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 4 cut(s) 488, 761, 770, 1390
NdeII GATC 8 cut(s) 160, 232, 255, 334, 509, 1109, 1714, 1894
NheI GCTAGC 2 cut(s) 1853, 1940
NlaIII CATG 3 cut(s) 715, 764, 1469
NlaIV GGNNCC 3 cut(s) 591, 1516, 1716
NmuCI GTSAC 3 cut(s) 412, 833, 1627
NspI RCATGY 1 cut(s) 715
NspV TTCGAA 2 cut(s) 443, 578
PaeR7I CTCGAG 1 cut(s) 1388
PdmI GAANNNNTTC 3 cut(s) 617, 1034, 1557
PfeI GAWTC 1 cut(s) 986
PflMI CCANNNNNTGG 1 cut(s) 98
PkrI GCNGC 2 cut(s) 1050, 1787
PleI GAGTC 1 cut(s) 1434
PpsI GAGTC 1 cut(s) 1434
Psp124BI GAGCTC 1 cut(s) 775
Psp6I CCWGG 1 cut(s) 552
PspEI GGTNACC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 3 cut(s) 591, 1516, 1716
PspPI GGNCC 1 cut(s) 590
PspXI VCTCGAGB 1 cut(s) 1388
PsrI GAACNNNNNNTAC 2 cut(s) 1801, 1833
PstNI CAGNNNCTG 1 cut(s) 1738
PsuI RGATCY 1 cut(s) 1714
RsaI GTAC 5 cut(s) 782, 856, 1476, 1688, 1810
RsaNI GTAC 5 cut(s) 781, 855, 1475, 1687, 1809
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 775
SalI GTCGAC 1 cut(s) 1003
SaqAI TTAA 9 cut(s) 129, 147, 261, 320, 384, 699, 957, 1620, 1683
SatI GCNGC 2 cut(s) 1049, 1786
Sau3AI GATC 8 cut(s) 160, 232, 255, 334, 509, 1109, 1714, 1894
Sau96I GGNCC 1 cut(s) 590
ScaI AGTACT 1 cut(s) 1688
SchI GAGTC 1 cut(s) 1434
ScrFI CCNGG 1 cut(s) 554
SduI GDGCHC 4 cut(s) 775, 1386, 1658, 1921
SfaNI GCATC 3 cut(s) 97, 967, 1580
Sfr274I CTCGAG 1 cut(s) 1388
SfuI TTCGAA 2 cut(s) 443, 578
SinI GGWCC 1 cut(s) 590
SlaI CTCGAG 1 cut(s) 1388
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 4 cut(s) 319, 1325, 1388, 1526
SmoI CTYRAG 4 cut(s) 319, 1325, 1388, 1526
SpeI ACTAGT 1 cut(s) 1838
SsiI CCGC 3 cut(s) 350, 1303, 1786
SspI AATATT 1 cut(s) 1072
SspMI CTAG 9 cut(s) 852, 995, 1170, 1185, 1839, 1854, 1922, 1937, 1941
SstI GAGCTC 1 cut(s) 775
StyD4I CCNGG 1 cut(s) 552
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 4 cut(s) 460, 469, 1415, 1474
TaiI ACGT 3 cut(s) 188, 688, 835
TatI WGTACW 2 cut(s) 1474, 1686
TauI GCSGC 1 cut(s) 1788
TfiI GAWTC 1 cut(s) 986
Tru1I TTAA 9 cut(s) 129, 147, 261, 320, 384, 699, 957, 1620, 1683
Tru9I TTAA 9 cut(s) 129, 147, 261, 320, 384, 699, 957, 1620, 1683
TscAI CASTG 2 cut(s) 1368, 1401
TseFI GTSAC 3 cut(s) 412, 833, 1627
TseI GCWGC 1 cut(s) 1048
Tsp45I GTSAC 3 cut(s) 412, 833, 1627
TspDTI ATGAA 6 cut(s) 27, 599, 956, 1148, 1204, 1447
TspGWI ACGGA 3 cut(s) 1141, 1673, 1769
TspRI CASTG 2 cut(s) 1368, 1401
Van91I CCANNNNNTGG 1 cut(s) 98
Vha464I CTTAAG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 590
XapI RAATTY 4 cut(s) 366, 1022, 1144, 1696
XbaI TCTAGA 2 cut(s) 1169, 1921
XceI RCATGY 1 cut(s) 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XhoI CTCGAG 1 cut(s) 1388
XmiI GTMKAC 3 cut(s) 379, 1004, 1835
XmnI GAANNNNTTC 3 cut(s) 617, 1034, 1557
XspI CTAG 9 cut(s) 852, 995, 1170, 1185, 1839, 1854, 1922, 1937, 1941
ZrmI AGTACT 1 cut(s) 1688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.