Cyclic nucleotide-gated ion channel 1-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| cNMP_binding | PF00027 | 89 - 178 | 8.4e-08 | Cyclic nucleotide-binding domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 372, 770 |
| AclWI | GGATC | 2 cut(s) | 104, 603 |
| AcoI | YGGCCR | 1 cut(s) | 510 |
| AcsI | RAATTY | 1 cut(s) | 539 |
| AfaI | GTAC | 2 cut(s) | 345, 753 |
| AfeI | AGCGCT | 1 cut(s) | 173 |
| AgsI | TTSAA | 7 cut(s) | 64, 238, 432, 494, 503, 523, 604 |
| AjnI | CCWGG | 1 cut(s) | 473 |
| AluBI | AGCT | 3 cut(s) | 232, 382, 415 |
| AluI | AGCT | 3 cut(s) | 232, 382, 415 |
| AlwI | GGATC | 2 cut(s) | 104, 603 |
| Ama87I | CYCGRG | 1 cut(s) | 148 |
| Aor51HI | AGCGCT | 1 cut(s) | 173 |
| AoxI | GGCC | 2 cut(s) | 46, 510 |
| ApoI | RAATTY | 1 cut(s) | 539 |
| AseI | ATTAAT | 1 cut(s) | 657 |
| AspLEI | GCGC | 1 cut(s) | 174 |
| AspS9I | GGNCC | 3 cut(s) | 477, 680, 745 |
| AsuHPI | GGTGA | 2 cut(s) | 407, 547 |
| AvaI | CYCGRG | 1 cut(s) | 148 |
| AvaII | GGWCC | 3 cut(s) | 477, 680, 745 |
| BalI | TGGCCA | 1 cut(s) | 512 |
| BccI | CCATC | 1 cut(s) | 502 |
| BciT130I | CCWGG | 1 cut(s) | 475 |
| BclI | TGATCA | 2 cut(s) | 72, 738 |
| BfaI | CTAG | 3 cut(s) | 17, 465, 793 |
| BfmI | CTRYAG | 1 cut(s) | 352 |
| BfoI | RGCGCY | 1 cut(s) | 175 |
| Bme1390I | CCNGG | 1 cut(s) | 475 |
| Bme18I | GGWCC | 3 cut(s) | 477, 680, 745 |
| BmeT110I | CYCGRG | 1 cut(s) | 148 |
| BmgT120I | GGNCC | 3 cut(s) | 477, 680, 745 |
| BmiI | GGNNCC | 3 cut(s) | 682, 746, 747 |
| BmrFI | CCNGG | 1 cut(s) | 475 |
| BmrI | ACTGGG | 1 cut(s) | 679 |
| BmsI | GCATC | 1 cut(s) | 275 |
| BmuI | ACTGGG | 1 cut(s) | 679 |
| BpmI | CTGGAG | 1 cut(s) | 242 |
| BpuEI | CTTGAG | 1 cut(s) | 179 |
| BsaJI | CCNNGG | 3 cut(s) | 147, 558, 784 |
| Bse1I | ACTGG | 3 cut(s) | 685, 700, 719 |
| BseBI | CCWGG | 1 cut(s) | 475 |
| BseDI | CCNNGG | 3 cut(s) | 147, 558, 784 |
| BseGI | GGATG | 1 cut(s) | 229 |
| BseNI | ACTGG | 3 cut(s) | 685, 700, 719 |
| BseRI | GAGGAG | 2 cut(s) | 423, 629 |
| BshFI | GGCC | 2 cut(s) | 48, 512 |
| BsiHKCI | CYCGRG | 1 cut(s) | 148 |
| BslFI | GGGAC | 5 cut(s) | 102, 165, 666, 751, 758 |
| BsmFI | GGGAC | 5 cut(s) | 102, 165, 666, 751, 758 |
| BsmI | GAATGC | 1 cut(s) | 475 |
| BsnI | GGCC | 2 cut(s) | 48, 512 |
| BsoBI | CYCGRG | 1 cut(s) | 148 |
| Bsp143I | GATC | 5 cut(s) | 72, 96, 313, 595, 738 |
| BspACI | CCGC | 2 cut(s) | 372, 770 |
| BspANI | GGCC | 2 cut(s) | 48, 512 |
| BspLI | GGNNCC | 3 cut(s) | 682, 746, 747 |
| BspPI | GGATC | 2 cut(s) | 104, 603 |
| BsrI | ACTGG | 3 cut(s) | 685, 700, 719 |
| BssECI | CCNNGG | 3 cut(s) | 147, 558, 784 |
| BssMI | GATC | 5 cut(s) | 72, 96, 313, 595, 738 |
| BssT1I | CCWWGG | 2 cut(s) | 558, 784 |
| Bst2UI | CCWGG | 1 cut(s) | 475 |
| Bst4CI | ACNGT | 1 cut(s) | 85 |
| Bst6I | CTCTTC | 1 cut(s) | 518 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 629 |
| BstDEI | CTNAG | 2 cut(s) | 54, 378 |
| BstF5I | GGATG | 1 cut(s) | 229 |
| BstH2I | RGCGCY | 1 cut(s) | 175 |
| BstHHI | GCGC | 1 cut(s) | 174 |
| BstKTI | GATC | 5 cut(s) | 75, 99, 316, 598, 741 |
| BstMBI | GATC | 5 cut(s) | 72, 96, 313, 595, 738 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 629 |
| BstNI | CCWGG | 1 cut(s) | 475 |
| BstSCI | CCNGG | 1 cut(s) | 473 |
| BstSFI | CTRYAG | 1 cut(s) | 352 |
| BsuRI | GGCC | 2 cut(s) | 48, 512 |
| BtsCI | GGATG | 1 cut(s) | 229 |
| CfoI | GCGC | 1 cut(s) | 174 |
| Cfr13I | GGNCC | 3 cut(s) | 477, 680, 745 |
| Csp6I | GTAC | 2 cut(s) | 344, 752 |
| CviAII | CATG | 1 cut(s) | 76 |
| CviQI | GTAC | 2 cut(s) | 344, 752 |
| DdeI | CTNAG | 2 cut(s) | 54, 378 |
| DpnI | GATC | 5 cut(s) | 74, 98, 315, 597, 740 |
| DpnII | GATC | 5 cut(s) | 72, 96, 313, 595, 738 |
| EaeI | YGGCCR | 1 cut(s) | 510 |
| Eam1104I | CTCTTC | 1 cut(s) | 518 |
| EarI | CTCTTC | 1 cut(s) | 518 |
| Eco130I | CCWWGG | 2 cut(s) | 558, 784 |
| Eco147I | AGGCCT | 1 cut(s) | 48 |
| Eco47I | GGWCC | 3 cut(s) | 477, 680, 745 |
| Eco47III | AGCGCT | 1 cut(s) | 173 |
| Eco88I | CYCGRG | 1 cut(s) | 148 |
| EcoO109I | RGGNCCY | 2 cut(s) | 680, 745 |
| EcoRII | CCWGG | 1 cut(s) | 473 |
| EcoT14I | CCWWGG | 2 cut(s) | 558, 784 |
| ErhI | CCWWGG | 2 cut(s) | 558, 784 |
| FaeI | CATG | 1 cut(s) | 79 |
| FaiI | YATR | 8 cut(s) | 77, 221, 273, 403, 405, 482, 580, 635 |
| FaqI | GGGAC | 5 cut(s) | 102, 165, 666, 751, 758 |
| FatI | CATG | 1 cut(s) | 75 |
| FauI | CCCGC | 1 cut(s) | 777 |
| FbaI | TGATCA | 2 cut(s) | 72, 738 |
| FokI | GGATG | 1 cut(s) | 236 |
| FspBI | CTAG | 3 cut(s) | 17, 465, 793 |
| GlaI | GCGC | 1 cut(s) | 173 |
| GsuI | CTGGAG | 1 cut(s) | 242 |
| HaeII | RGCGCY | 1 cut(s) | 175 |
| HaeIII | GGCC | 2 cut(s) | 48, 512 |
| HhaI | GCGC | 1 cut(s) | 174 |
| Hin1II | CATG | 1 cut(s) | 79 |
| Hin6I | GCGC | 1 cut(s) | 172 |
| HinP1I | GCGC | 1 cut(s) | 172 |
| HindIII | AAGCTT | 1 cut(s) | 380 |
| HphI | GGTGA | 2 cut(s) | 407, 547 |
| Hpy188I | TCNGA | 2 cut(s) | 448, 738 |
| Hpy188III | TCNNGA | 4 cut(s) | 17, 150, 196, 296 |
| Hpy99I | CGWCG | 1 cut(s) | 654 |
| HpyAV | CCTTC | 4 cut(s) | 58, 293, 671, 765 |
| HpyCH4III | ACNGT | 1 cut(s) | 85 |
| HpyCH4V | TGCA | 2 cut(s) | 578, 623 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 629 |
| HpyF3I | CTNAG | 2 cut(s) | 54, 378 |
| Hsp92II | CATG | 1 cut(s) | 79 |
| HspAI | GCGC | 1 cut(s) | 172 |
| KflI | GGGWCCC | 1 cut(s) | 745 |
| Ksp22I | TGATCA | 2 cut(s) | 72, 738 |
| Kzo9I | GATC | 5 cut(s) | 72, 96, 313, 595, 738 |
| LweI | GCATC | 1 cut(s) | 275 |
| MaeI | CTAG | 3 cut(s) | 17, 465, 793 |
| MaeIII | GTNAC | 3 cut(s) | 158, 248, 532 |
| MalI | GATC | 5 cut(s) | 74, 98, 315, 597, 740 |
| MboI | GATC | 5 cut(s) | 72, 96, 313, 595, 738 |
| MboII | GAAGA | 4 cut(s) | 113, 134, 170, 535 |
| MfeI | CAATTG | 1 cut(s) | 599 |
| MlsI | TGGCCA | 1 cut(s) | 512 |
| MluCI | AATT | 5 cut(s) | 207, 398, 421, 539, 599 |
| MluNI | TGGCCA | 1 cut(s) | 512 |
| MmeI | TCCRAC | 1 cut(s) | 591 |
| MnlI | CCTC | 8 cut(s) | 59, 87, 143, 157, 203, 266, 401, 607 |
| Mox20I | TGGCCA | 1 cut(s) | 512 |
| MscI | TGGCCA | 1 cut(s) | 512 |
| MseI | TTAA | 1 cut(s) | 657 |
| Msp20I | TGGCCA | 1 cut(s) | 512 |
| MspR9I | CCNGG | 1 cut(s) | 475 |
| MunI | CAATTG | 1 cut(s) | 599 |
| Mva1269I | GAATGC | 1 cut(s) | 475 |
| MvaI | CCWGG | 1 cut(s) | 475 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 629 |
| NdeII | GATC | 5 cut(s) | 72, 96, 313, 595, 738 |
| NlaIII | CATG | 1 cut(s) | 79 |
| NlaIV | GGNNCC | 3 cut(s) | 682, 746, 747 |
| NmuCI | GTSAC | 2 cut(s) | 248, 532 |
| PceI | AGGCCT | 1 cut(s) | 48 |
| PctI | GAATGC | 1 cut(s) | 475 |
| PpuMI | RGGWCCY | 2 cut(s) | 680, 745 |
| PshBI | ATTAAT | 1 cut(s) | 657 |
| Psp5II | RGGWCCY | 2 cut(s) | 680, 745 |
| Psp6I | CCWGG | 1 cut(s) | 473 |
| PspGI | CCWGG | 1 cut(s) | 473 |
| PspN4I | GGNNCC | 3 cut(s) | 682, 746, 747 |
| PspPI | GGNCC | 3 cut(s) | 477, 680, 745 |
| PspPPI | RGGWCCY | 2 cut(s) | 680, 745 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 358, 390, 717, 749 |
| RsaI | GTAC | 2 cut(s) | 345, 753 |
| RsaNI | GTAC | 2 cut(s) | 344, 752 |
| SaqAI | TTAA | 1 cut(s) | 657 |
| Sau3AI | GATC | 5 cut(s) | 72, 96, 313, 595, 738 |
| Sau96I | GGNCC | 3 cut(s) | 477, 680, 745 |
| ScrFI | CCNGG | 1 cut(s) | 475 |
| SetI | ASST | 9 cut(s) | 234, 258, 353, 384, 397, 417, 479, 682, 757 |
| SfaNI | GCATC | 1 cut(s) | 275 |
| SfcI | CTRYAG | 1 cut(s) | 352 |
| SinI | GGWCC | 3 cut(s) | 477, 680, 745 |
| SmlI | CTYRAG | 1 cut(s) | 194 |
| SmoI | CTYRAG | 1 cut(s) | 194 |
| Sse9I | AATT | 5 cut(s) | 207, 398, 421, 539, 599 |
| SseBI | AGGCCT | 1 cut(s) | 48 |
| SsiI | CCGC | 2 cut(s) | 372, 770 |
| SspMI | CTAG | 3 cut(s) | 17, 465, 793 |
| StuI | AGGCCT | 1 cut(s) | 48 |
| StyD4I | CCNGG | 1 cut(s) | 473 |
| StyI | CCWWGG | 2 cut(s) | 558, 784 |
| TaaI | ACNGT | 1 cut(s) | 85 |
| TaqI | TCGA | 2 cut(s) | 99, 461 |
| TasI | AATT | 5 cut(s) | 207, 398, 421, 539, 599 |
| Tru1I | TTAA | 1 cut(s) | 657 |
| Tru9I | TTAA | 1 cut(s) | 657 |
| TseFI | GTSAC | 2 cut(s) | 248, 532 |
| Tsp45I | GTSAC | 2 cut(s) | 248, 532 |
| TspDTI | ATGAA | 2 cut(s) | 141, 240 |
| TspGWI | ACGGA | 1 cut(s) | 106 |
| VpaK11BI | GGWCC | 3 cut(s) | 477, 680, 745 |
| VspI | ATTAAT | 1 cut(s) | 657 |
| XapI | RAATTY | 1 cut(s) | 539 |
| XbaI | TCTAGA | 1 cut(s) | 16 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 692 |
| XspI | CTAG | 3 cut(s) | 17, 465, 793 |