Prupe.8G097600_v2.0.a1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000017
Physical Location & Seq
Forward (+)
12950666 .. 12958098
7433 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G097600.1

Sequence Viewer

Length: 2778 bp
ATGGCTTCAGCAATTATGGAGATATCCCAAGAGATAGCTGTGGACATTGTAGAACGTATACCAAGAGAATCGTCACTACGAAGTTGGGCAATTGAGGAATCTGCCACTATAAATGAAGGTCATAGATCAAGTAGAGAATGGCCAAAAATAATAAAGAGTATTTTTTATCGAGGTCGGTCATTTCTTCCAAAGTGGAAGAGGGCATTTTTAGCATCATGTGTATTTGGGGTCTTAATAGATCCGTTATTCTTTTATATTCCTATTGTCAACAAGGATAAGAAGTGCATCGGGTTAGATAAAAGTTTGAAGGGAGCCGTTATTTCACTACGATCGACAATGGATCTATTTTATTTAGTGAACATTGTTATTCAAATTTATATCGAACCTAAAGTTCCAACAATTAGGGTCATGGGGAGATCATATCTTCATACCATAGTTTTGACAAAAGGAACCATATTAGTTGAAGATGCTTTGGCAATGGCTAACAGGATTTGGAGGATCTCATCACATATCTTAATTGACATTTTAGCTGTTCTTCCCATTCCACAGGCAGTGATCCTTATCTTCATGGACTCTAGTTCTTTGAATACGAGGAAGTTTTTGGCTTTTCTTGCTCTGTTACAATATGTACCACGAGTTCTTCGTATCTACTTATTGTGTACAAAATTCAACAAGACTCCTACCAGAGAGACTGAAATATGGATTTTATTTAAAGGCGCATTCAGTTTCTTTTTGTACATCCTTGCTAGTCATGTATTTGGAGCTTTCTGGTACTTTTTAGCTATCCAGCGGGAGGCGGCTTGCTGGCAAAATGCTTGTCGAAACAACAATGGATGTGAACCAACTACCTTCTACTGCAATGGTCGTACAATCAAAGACATCACATTTCTGGACGACTTATGCTCTATAAATCCACACAATACTAATGCAACACCCTTCTGTTTTGGTATGTTTGTTGAGGCTGTCCAGTCTGGTGTGTTGGAGTCAACAAATTTACCGAAAAAATTCTTTCATTGTTTCTGGTGGGGCTTGCGAAATCTAAGTTCTCTTGGGCAAAACCTCGAGACGAGTAACTATACATGGGAAAATATCTTTGCCATTTTTATTTCTCTAAGTGGCTTGCTCCTGGTTCTACTATACCTCACTACAAATTTGAAGATATGTATGGAGTTGGTAACTAGAACATCAGCGAAGATGAGAATTATACGGCAGCTGAAAATGAAAGATCTAGAGGTACAATTCTGGTTATCTGAAAATGACATCCCTAAGAATATGAAGGCGACCATCATGCAAAAGGTGCACAAACAACTTGAACAAAACAAAGATGTTCGTGTGGAGAATATCCTCTATATTCTTCCCTTGGAACAAAAGAGATTTATCAAGCGACATCTCTGCTGGCCTACAATGAAGAAAGTGCCAATGCTTCGAGTTATGGACGATCACGTGTTGAAAGAAATCTTTGACAATCTCAAGCCAGTGAGCTATACAGAAGACAAATGTATAATTGGAGAGGGTGAACCACTTGTTAAAATGCTCTTCATCACTCGAGGCATTTTGTTGACCTACACAACTAACAATGGTGCTAGAAGAAGTAGTGGAGGTTCTTCAACCACCAAGTGTCTTGCCAAAGGTGATTTCTATGGAGAAGAACTTCTAACCTGGGCATCAACATTCTCCCCGCTTTCAGACTTACCCATCTCCACAACATTTGTCAAGTCCCTCACAAAAGTTGAAGCATTTGCGCTCATGGCCAATGACTTGAAGACTATAGCGTCTAAATTCTGGAGGCATTTTAGAACGGATGCTCGGATGCAGGTACATCTCTCTGCAAATCTTATACAAACCAATTGGCGCCGCCGCTATACAAGGAGGGGCCGGTGGTATAGCTTGAAAGAGCTGGAGATTGCGACGCGTGGATTTTCTCCAGAGAACGTGATTGGAGGAGGATACGACGTCGTTTTCAGAGGAATTTTGCAGGACGGCCATGTCGTGGCGGTCAAGAACCTTCTCAACGACGGGGGTCAGGCAGAGATACTGTTTAAGGCGGAAGTGGAAGCCATTGGTAAAGTAAAGCATAAGAACTTGGTGGGTCTAATTGGCTATTGTGCTGAAGGCCCTCAAAGGATGCTTGTACATGAATACATTGACAATGGCAATTTGGAGCAATGGTTGCATGGTGATGTTGGGCCTGTCAGCCCTCTGACCTGGGATATTCGAATGAAAATAGCTGTCGGGACAGCAAAAGGGCTGGACTACTTGCACGAATGGTTAGAACCCAGGGTGGTGCATCGTGATATAAAACCCAGCAACATTCTTCTGGATAGAAAATGGAACCCGAAAGTATCAGGTTTTGGCGTGGCCAAGCTCTTAGCACCTGAGTCAAGCTATGTGACTACATCTGTAGTGGGGACAATGGGATATATATGTCCAGAGTATGTCAGGACAGGTATGCTTAACGAGTGGAGTGATGTATATAGCTTTGGAATTCTACTCATGGAGATAATTACAGGAAGAAGACCAAGTGACCCTTCCAGACCAGATGAAGAGATATTCCTGGTTGATTGGTTTAAAGAAATGATCCAAAGTCGCCGTGGGGAGGAGGTTGTAGATCCTCTGATAGAAGTTCGGCCCTCTCCAAGAGCTATGAAGCGAGCATTGCTGGTTTGTCTCCGCTGTACAGATTCAGATGTCAACAAGCGACCAAAAATGGGGCAAATTGTTCATATGCTTGAGGCAGATGACTTCCCTGATTGTTCTGAAAGTCCTTTCTTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase_Tyr cNMP_binding

Protein Analysis

926

Amino Acids

105.89

Weight (kDa)

9.07

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1771, 1985
AatII GACGTC 1 cut(s) 1956
Acc36I ACCTGC 1 cut(s) 1804
AccB1I GGYRCC 1 cut(s) 1851
AccB7I CCANNNNNTGG 1 cut(s) 1990
AccI GTMKAC 1 cut(s) 58
AccII CGCG 1 cut(s) 1912
AciI CCGC 8 cut(s) 790, 797, 1679, 1855, 1858, 1994, 2045, 2671
AclWI GGATC 6 cut(s) 233, 348, 506, 550, 2572, 2603
AcoI YGGCCR 4 cut(s) 140, 1749, 1981, 2358
AcsI RAATTY 8 cut(s) 372, 665, 991, 1004, 1150, 1778, 1968, 2484
AcuI CTGAAG 1 cut(s) 2130
AcvI CACGTG 1 cut(s) 1444
AcyI GRCGYC 2 cut(s) 1852, 1953
AdeI CACNNNGTG 1 cut(s) 1617
AfaI GTAC 9 cut(s) 630, 661, 737, 773, 868, 1236, 1818, 2133, 2677
AfiI CCNNNNNNNGG 4 cut(s) 793, 1990, 2596, 2708
AflIII ACRYGT 2 cut(s) 1443, 1910
AjnI CCWGG 5 cut(s) 1125, 1658, 2204, 2276, 2553
AjuI GAANNNNNNNTTGG 4 cut(s) 1619, 1651, 2512, 2544
Alw21I GWGCWC 1 cut(s) 1302
Alw26I GTCTC 3 cut(s) 683, 1058, 2672
Alw44I GTGCAC 1 cut(s) 1298
AlwI GGATC 6 cut(s) 233, 348, 506, 550, 2572, 2603
Ama87I CYCGRG 2 cut(s) 1061, 1545
AoxI GGCC 9 cut(s) 140, 1397, 1749, 1873, 1981, 2113, 2186, 2358, 2627
ApaLI GTGCAC 1 cut(s) 1298
ApeKI GCWGC 1 cut(s) 1210
ApoI RAATTY 8 cut(s) 372, 665, 991, 1004, 1150, 1778, 1968, 2484
ArsI GACNNNNNNTTYG 2 cut(s) 802, 834
Asp700I GAANNNNTTC 2 cut(s) 1004, 1650
AspLEI GCGC 3 cut(s) 719, 1744, 1854
AspS9I GGNCC 4 cut(s) 1873, 2114, 2186, 2628
AsuHPI GGTGA 3 cut(s) 1526, 1643, 2189
AsuII TTCGAA 1 cut(s) 2215
AvaI CYCGRG 2 cut(s) 1061, 1545
BaeGI GKGCMC 1 cut(s) 1302
BalI TGGCCA 3 cut(s) 142, 1751, 2360
BanI GGYRCC 1 cut(s) 1851
BauI CACGAG 1 cut(s) 633
BbrPI CACGTG 1 cut(s) 1444
BbsI GAAGAC 3 cut(s) 1497, 1769, 2521
Bbv12I GWGCWC 1 cut(s) 1302
BbvI GCAGC 1 cut(s) 1222
BccI CCATC 2 cut(s) 1292, 1703
BceAI ACGGC 4 cut(s) 299, 1223, 1996, 2574
BcgI CGANNNNNNTGC 4 cut(s) 1270, 1304, 1374, 1408
BciT130I CCWGG 5 cut(s) 1127, 1660, 2206, 2278, 2555
BciVI GTATCC 1 cut(s) 1940
BcoDI GTCTC 3 cut(s) 683, 1058, 2672
BfaI CTAG 5 cut(s) 576, 747, 1179, 1229, 1584
BfmI CTRYAG 2 cut(s) 1767, 2400
BfoI RGCGCY 1 cut(s) 1855
BfuAI ACCTGC 1 cut(s) 1804
BfuI GTATCC 1 cut(s) 1940
BglII AGATCT 1 cut(s) 1225
BisI GCNGC 4 cut(s) 798, 1211, 1855, 1858
BlsI GCNGC 4 cut(s) 799, 1212, 1856, 1859
Bme1390I CCNGG 5 cut(s) 1127, 1660, 2206, 2278, 2555
BmeT110I CYCGRG 2 cut(s) 1061, 1545
BmgT120I GGNCC 4 cut(s) 1873, 2114, 2186, 2628
BmiI GGNNCC 5 cut(s) 313, 451, 1853, 1874, 2333
BmrFI CCNGG 5 cut(s) 1127, 1660, 2206, 2278, 2555
BmsI GCATC 8 cut(s) 221, 294, 457, 1673, 1792, 1800, 2115, 2296
BoxI GACNNNNGTC 1 cut(s) 2019
BpiI GAAGAC 3 cut(s) 1497, 1769, 2521
BpmI CTGGAG 3 cut(s) 1804, 1908, 1919
Bpu14I TTCGAA 1 cut(s) 2215
BpuEI CTTGAG 2 cut(s) 1454, 2750
BsaAI YACGTR 1 cut(s) 1444
BsaBI GATNNNNATC 1 cut(s) 560
BsaHI GRCGYC 2 cut(s) 1852, 1953
BsaJI CCNNGG 6 cut(s) 1359, 1659, 2205, 2276, 2277, 2590
BsaXI ACNNNNNCTCC 2 cut(s) 2153, 2183
Bsc4I CCNNNNNNNGG 4 cut(s) 793, 1990, 2596, 2708
Bse118I RCCGGY 1 cut(s) 1875
Bse1I ACTGG 2 cut(s) 967, 1475
Bse3DI GCAATG 4 cut(s) 483, 865, 2171, 2654
Bse8I GATNNNNATC 1 cut(s) 560
BseBI CCWGG 5 cut(s) 1127, 1660, 2206, 2278, 2555
BseDI CCNNGG 6 cut(s) 1359, 1659, 2205, 2276, 2277, 2590
BseGI GGATG 6 cut(s) 738, 839, 1260, 1807, 1815, 2130
BseJI GATNNNNATC 1 cut(s) 560
BseLI CCNNNNNNNGG 4 cut(s) 793, 1990, 2596, 2708
BseMI GCAATG 4 cut(s) 483, 865, 2171, 2654
BseMII CTCAG 1 cut(s) 2367
BseNI ACTGG 2 cut(s) 967, 1475
BseRI GAGGAG 2 cut(s) 1956, 2612
BseSI GKGCMC 1 cut(s) 1302
BseXI GCAGC 1 cut(s) 1222
BseYI CCCAGC 1 cut(s) 2303
Bsh1236I CGCG 1 cut(s) 1912
Bsh1285I CGRYCG 1 cut(s) 332
BshFI GGCC 9 cut(s) 142, 1399, 1751, 1875, 1983, 2115, 2188, 2360, 2629
BshNI GGYRCC 1 cut(s) 1851
BsiEI CGRYCG 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 1302
BsiHKCI CYCGRG 2 cut(s) 1061, 1545
BsiSI CCGG 1 cut(s) 1876
BslFI GGGAC 3 cut(s) 1702, 2248, 2422
BslI CCNNNNNNNGG 4 cut(s) 793, 1990, 2596, 2708
BsmAI GTCTC 3 cut(s) 683, 1058, 2672
BsmBI CGTCTC 1 cut(s) 1058
BsmFI GGGAC 3 cut(s) 1702, 2248, 2422
BsmI GAATGC 1 cut(s) 719
BsnI GGCC 9 cut(s) 142, 1399, 1751, 1875, 1983, 2115, 2188, 2360, 2629
BsoBI CYCGRG 2 cut(s) 1061, 1545
Bsp119I TTCGAA 1 cut(s) 2215
Bsp1286I GDGCHC 1 cut(s) 1302
Bsp1407I TGTACA 4 cut(s) 659, 735, 2131, 2675
BspACI CCGC 8 cut(s) 790, 797, 1679, 1855, 1858, 1994, 2045, 2671
BspANI GGCC 9 cut(s) 142, 1399, 1751, 1875, 1983, 2115, 2188, 2360, 2629
BspCNI CTCAG 1 cut(s) 2368
BspFNI CGCG 1 cut(s) 1912
BspHI TCATGA 1 cut(s) 2774
BspLI GGNNCC 5 cut(s) 313, 451, 1853, 1874, 2333
BspMI ACCTGC 1 cut(s) 1804
BspPI GGATC 6 cut(s) 233, 348, 506, 550, 2572, 2603
BspQI GCTCTTC 1 cut(s) 1541
BspT104I TTCGAA 1 cut(s) 2215
BspT107I GGYRCC 1 cut(s) 1851
BsrDI GCAATG 4 cut(s) 483, 865, 2171, 2654
BsrFI RCCGGY 1 cut(s) 1875
BsrGI TGTACA 4 cut(s) 659, 735, 2131, 2675
BsrI ACTGG 2 cut(s) 967, 1475
BssAI RCCGGY 1 cut(s) 1875
BssECI CCNNGG 6 cut(s) 1359, 1659, 2205, 2276, 2277, 2590
BssNAI GTATAC 1 cut(s) 59
BssNI GRCGYC 2 cut(s) 1852, 1953
BssSI CACGAG 1 cut(s) 633
BssT1I CCWWGG 1 cut(s) 1359
Bst1107I GTATAC 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 633
Bst2UI CCWGG 5 cut(s) 1127, 1660, 2206, 2278, 2555
Bst4CI ACNGT 1 cut(s) 2037
Bst6I CTCTTC 3 cut(s) 191, 1541, 2538
BstACI GRCGYC 2 cut(s) 1852, 1953
BstAPI GCANNNNNTGC 2 cut(s) 1297, 2170
BstAUI TGTACA 4 cut(s) 659, 735, 2131, 2675
BstBAI YACGTR 1 cut(s) 1444
BstBI TTCGAA 1 cut(s) 2215
BstC8I GCNNGC 6 cut(s) 802, 806, 1031, 1121, 1397, 2652
BstDEI CTNAG 5 cut(s) 1040, 1112, 1266, 2368, 2376
BstDSI CCRYGG 1 cut(s) 2590
BstF5I GGATG 6 cut(s) 738, 839, 1260, 1807, 1815, 2130
BstFNI CGCG 1 cut(s) 1912
BstH2I RGCGCY 1 cut(s) 1855
BstHHI GCGC 3 cut(s) 719, 1744, 1854
BstMAI GTCTC 3 cut(s) 683, 1058, 2672
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 6 cut(s) 209, 611, 1297, 1748, 2170, 2656
BstNI CCWGG 5 cut(s) 1127, 1660, 2206, 2278, 2555
BstPAI GACNNNNGTC 1 cut(s) 2019
BstSCI CCNGG 5 cut(s) 1125, 1658, 2204, 2276, 2553
BstSFI CTRYAG 2 cut(s) 1767, 2400
BstSLI GKGCMC 1 cut(s) 1302
BstUI CGCG 1 cut(s) 1912
BstV1I GCAGC 1 cut(s) 1222
BstV2I GAAGAC 3 cut(s) 1497, 1769, 2521
BstX2I RGATCY 5 cut(s) 238, 340, 498, 1225, 2608
BstYI RGATCY 5 cut(s) 238, 340, 498, 1225, 2608
BstZ17I GTATAC 1 cut(s) 59
BsuI GTATCC 1 cut(s) 1940
BsuRI GGCC 9 cut(s) 142, 1399, 1751, 1875, 1983, 2115, 2188, 2360, 2629
BtgI CCRYGG 1 cut(s) 2590
BtsCI GGATG 6 cut(s) 738, 839, 1260, 1807, 1815, 2130
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 2 cut(s) 558, 1482
BveI ACCTGC 1 cut(s) 1804
Cac8I GCNNGC 6 cut(s) 802, 806, 1031, 1121, 1397, 2652
CciI TCATGA 1 cut(s) 2774
CfoI GCGC 3 cut(s) 719, 1744, 1854
Cfr10I RCCGGY 1 cut(s) 1875
Cfr13I GGNCC 4 cut(s) 1873, 2114, 2186, 2628
CseI GACGC 2 cut(s) 1761, 1918
Csp6I GTAC 9 cut(s) 629, 660, 736, 772, 867, 1235, 1817, 2132, 2676
CspCI CAANNNNNGTGG 2 cut(s) 1690, 1725
CviQI GTAC 9 cut(s) 629, 660, 736, 772, 867, 1235, 1817, 2132, 2676
DdeI CTNAG 5 cut(s) 1040, 1112, 1266, 2368, 2376
DinI GGCGCC 1 cut(s) 1853
DraI TTTAAA 2 cut(s) 712, 2569
DraIII CACNNNGTG 1 cut(s) 1617
DrdI GACNNNNNNGTC 2 cut(s) 1771, 1985
DseDI GACNNNNNNGTC 2 cut(s) 1771, 1985
EaeI YGGCCR 4 cut(s) 140, 1749, 1981, 2358
Eam1104I CTCTTC 3 cut(s) 191, 1541, 2538
EarI CTCTTC 3 cut(s) 191, 1541, 2538
EciI GGCGGA 1 cut(s) 2060
Eco130I CCWWGG 1 cut(s) 1359
Eco32I GATATC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 2130
Eco72I CACGTG 1 cut(s) 1444
Eco88I CYCGRG 2 cut(s) 1061, 1545
EcoO109I RGGNCCY 1 cut(s) 2114
EcoRI GAATTC 1 cut(s) 2484
EcoRII CCWGG 5 cut(s) 1125, 1658, 2204, 2276, 2553
EcoRV GATATC 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 1359
EgeI GGCGCC 1 cut(s) 1853
EheI GGCGCC 1 cut(s) 1853
ErhI CCWWGG 1 cut(s) 1359
Esp3I CGTCTC 1 cut(s) 1058
FalI AAGNNNNNCTT 2 cut(s) 2512, 2544
FaqI GGGAC 3 cut(s) 1702, 2248, 2422
FauI CCCGC 2 cut(s) 783, 1686
FauNDI CATATG 1 cut(s) 2724
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 4 cut(s) 798, 1211, 1855, 1858
FokI GGATG 6 cut(s) 725, 846, 1247, 1814, 1822, 2137
Fsp4HI GCNGC 4 cut(s) 798, 1211, 1855, 1858
FspBI CTAG 5 cut(s) 576, 747, 1179, 1229, 1584
GlaI GCGC 3 cut(s) 718, 1743, 1853
GluI GCNGC 4 cut(s) 798, 1211, 1855, 1858
GsaI CCCAGC 1 cut(s) 2307
GsuI CTGGAG 3 cut(s) 1804, 1908, 1919
HaeII RGCGCY 1 cut(s) 1855
HaeIII GGCC 9 cut(s) 142, 1399, 1751, 1875, 1983, 2115, 2188, 2360, 2629
HapII CCGG 1 cut(s) 1876
HgaI GACGC 2 cut(s) 1761, 1918
HhaI GCGC 3 cut(s) 719, 1744, 1854
Hin1I GRCGYC 2 cut(s) 1852, 1953
Hin6I GCGC 3 cut(s) 717, 1742, 1852
HinP1I GCGC 3 cut(s) 717, 1742, 1852
HincII GTYRAC 4 cut(s) 268, 987, 1560, 2692
HindII GTYRAC 4 cut(s) 268, 987, 1560, 2692
HinfI GANTC 7 cut(s) 68, 98, 572, 676, 983, 2378, 2681
HpaII CCGG 1 cut(s) 1876
HphI GGTGA 3 cut(s) 1526, 1643, 2189
Hpy188I TCNGA 8 cut(s) 1252, 1687, 1809, 1964, 2202, 2616, 2686, 2758
Hpy99I CGWCG 4 cut(s) 1912, 1955, 1958, 2018
HpyAV CCTTC 8 cut(s) 110, 301, 859, 946, 1270, 2015, 2105, 2538
HpyCH4III ACNGT 1 cut(s) 2037
HpyCH4IV ACGT 4 cut(s) 55, 1443, 1932, 1953
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 611, 1297, 1748, 2170, 2656
HpyF3I CTNAG 5 cut(s) 1040, 1112, 1266, 2368, 2376
HpySE526I ACGT 4 cut(s) 55, 1443, 1932, 1953
Hsp92I GRCGYC 2 cut(s) 1852, 1953
HspAI GCGC 3 cut(s) 717, 1742, 1852
KasI GGCGCC 1 cut(s) 1851
LguI GCTCTTC 1 cut(s) 1541
LmnI GCTCC 4 cut(s) 311, 761, 1128, 2161
Lsp1109I GCAGC 1 cut(s) 1222
LweI GCATC 8 cut(s) 221, 294, 457, 1673, 1792, 1800, 2115, 2296
MaeI CTAG 5 cut(s) 576, 747, 1179, 1229, 1584
MaeII ACGT 4 cut(s) 55, 1443, 1932, 1953
MaeIII GTNAC 6 cut(s) 72, 618, 1070, 1174, 2389, 2522
MfeI CAATTG 2 cut(s) 90, 1846
MflI RGATCY 5 cut(s) 238, 340, 498, 1225, 2608
MhlI GDGCHC 1 cut(s) 1302
MlsI TGGCCA 3 cut(s) 142, 1751, 2360
MluI ACGCGT 1 cut(s) 1910
MluNI TGGCCA 3 cut(s) 142, 1751, 2360
Mly113I GGCGCC 1 cut(s) 1852
MlyI GAGTC 4 cut(s) 566, 670, 992, 2387
MmeI TCCRAC 2 cut(s) 419, 960
Mox20I TGGCCA 3 cut(s) 142, 1751, 2360
MroXI GAANNNNTTC 2 cut(s) 1004, 1650
MscI TGGCCA 3 cut(s) 142, 1751, 2360
MseI TTAA 7 cut(s) 233, 515, 711, 1527, 2040, 2454, 2568
MslI CAYNNNNRTG 1 cut(s) 2178
Msp20I TGGCCA 3 cut(s) 142, 1751, 2360
MspA1I CMGCKG 3 cut(s) 790, 1213, 2673
MspI CCGG 1 cut(s) 1876
MspR9I CCNGG 5 cut(s) 1127, 1660, 2206, 2278, 2555
MunI CAATTG 2 cut(s) 90, 1846
Mva1269I GAATGC 1 cut(s) 719
MvaI CCWGG 5 cut(s) 1127, 1660, 2206, 2278, 2555
MvnI CGCG 1 cut(s) 1912
MwoI GCNNNNNNNGC 6 cut(s) 209, 611, 1297, 1748, 2170, 2656
NarI GGCGCC 1 cut(s) 1852
NdeI CATATG 1 cut(s) 2724
NlaIV GGNNCC 5 cut(s) 313, 451, 1853, 1874, 2333
NmuCI GTSAC 3 cut(s) 72, 2389, 2522
NspV TTCGAA 1 cut(s) 2215
PaeR7I CTCGAG 2 cut(s) 1061, 1545
PagI TCATGA 1 cut(s) 2774
PasI CCCWGGG 1 cut(s) 2277
PciSI GCTCTTC 1 cut(s) 1541
PcsI WCGNNNNNNNCGW 2 cut(s) 640, 1986
PctI GAATGC 1 cut(s) 719
PdmI GAANNNNTTC 2 cut(s) 1004, 1650
PfeI GAWTC 3 cut(s) 68, 98, 2681
PflMI CCANNNNNTGG 1 cut(s) 1990
PkrI GCNGC 4 cut(s) 799, 1212, 1856, 1859
Ple19I CGATCG 1 cut(s) 332
PleI GAGTC 4 cut(s) 566, 670, 991, 2386
PluTI GGCGCC 1 cut(s) 1855
PmaCI CACGTG 1 cut(s) 1444
PmlI CACGTG 1 cut(s) 1444
PpsI GAGTC 4 cut(s) 566, 670, 991, 2386
Ppu21I YACGTR 1 cut(s) 1444
PshAI GACNNNNGTC 1 cut(s) 2019
Psp6I CCWGG 5 cut(s) 1125, 1658, 2204, 2276, 2553
PspCI CACGTG 1 cut(s) 1444
PspFI CCCAGC 1 cut(s) 2303
PspGI CCWGG 5 cut(s) 1125, 1658, 2204, 2276, 2553
PspN4I GGNNCC 5 cut(s) 313, 451, 1853, 1874, 2333
PspPI GGNCC 4 cut(s) 1873, 2114, 2186, 2628
PspXI VCTCGAGB 1 cut(s) 1545
PsrI GAACNNNNNNTAC 4 cut(s) 621, 653, 1585, 1617
PsuI RGATCY 5 cut(s) 238, 340, 498, 1225, 2608
PvuI CGATCG 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 1213
RsaI GTAC 9 cut(s) 630, 661, 737, 773, 868, 1236, 1818, 2133, 2677
RsaNI GTAC 9 cut(s) 629, 660, 736, 772, 867, 1235, 1817, 2132, 2676
RseI CAYNNNNRTG 1 cut(s) 2178
SapI GCTCTTC 1 cut(s) 1541
SaqAI TTAA 7 cut(s) 233, 515, 711, 1527, 2040, 2454, 2568
SatI GCNGC 4 cut(s) 798, 1211, 1855, 1858
Sau96I GGNCC 4 cut(s) 1873, 2114, 2186, 2628
SchI GAGTC 4 cut(s) 566, 670, 992, 2387
ScrFI CCNGG 5 cut(s) 1127, 1660, 2206, 2278, 2555
SduI GDGCHC 1 cut(s) 1302
SfaNI GCATC 8 cut(s) 221, 294, 457, 1673, 1792, 1800, 2115, 2296
SfcI CTRYAG 2 cut(s) 1767, 2400
SfoI GGCGCC 1 cut(s) 1853
Sfr274I CTCGAG 2 cut(s) 1061, 1545
SfuI TTCGAA 1 cut(s) 2215
SlaI CTCGAG 2 cut(s) 1061, 1545
SmiMI CAYNNNNRTG 1 cut(s) 2178
SmlI CTYRAG 4 cut(s) 1061, 1469, 1545, 2729
SmoI CTYRAG 4 cut(s) 1061, 1469, 1545, 2729
SsiI CCGC 8 cut(s) 790, 797, 1679, 1855, 1858, 1994, 2045, 2671
SspDI GGCGCC 1 cut(s) 1851
SspMI CTAG 5 cut(s) 576, 747, 1179, 1229, 1584
StyD4I CCNGG 5 cut(s) 1125, 1658, 2204, 2276, 2553
StyI CCWWGG 1 cut(s) 1359
TaaI ACNGT 1 cut(s) 2037
TaiI ACGT 4 cut(s) 58, 1446, 1935, 1956
TaqI TCGA 8 cut(s) 169, 332, 381, 820, 1062, 1426, 1546, 2215
TaqII GACCGA 1 cut(s) 165
TatI WGTACW 4 cut(s) 659, 735, 2131, 2675
TauI GCSGC 3 cut(s) 800, 1857, 1860
TfiI GAWTC 3 cut(s) 68, 98, 2681
Tru1I TTAA 7 cut(s) 233, 515, 711, 1527, 2040, 2454, 2568
Tru9I TTAA 7 cut(s) 233, 515, 711, 1527, 2040, 2454, 2568
TscAI CASTG 2 cut(s) 558, 1482
TseFI GTSAC 3 cut(s) 72, 2389, 2522
TseI GCWGC 1 cut(s) 1210
Tsp45I GTSAC 3 cut(s) 72, 2389, 2522
TspGWI ACGGA 2 cut(s) 231, 1814
TspRI CASTG 2 cut(s) 558, 1482
Van91I CCANNNNNTGG 1 cut(s) 1990
VneI GTGCAC 1 cut(s) 1298
XapI RAATTY 8 cut(s) 372, 665, 991, 1004, 1150, 1778, 1968, 2484
XbaI TCTAGA 1 cut(s) 1228
XcmI CCANNNNNNNNNTGG 1 cut(s) 2588
XhoI CTCGAG 2 cut(s) 1061, 1545
XmiI GTMKAC 1 cut(s) 58
XmnI GAANNNNTTC 2 cut(s) 1004, 1650
XspI CTAG 5 cut(s) 576, 747, 1179, 1229, 1584
ZraI GACGTC 1 cut(s) 1954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.