Prupe.7G073200_v2.0.a1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000017
Physical Location & Seq
Reverse (-)
11088472 .. 11093476
5005 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G073200.1

Sequence Viewer

Length: 1977 bp
ATGGTCAACTCATGTGATATTGAAACAATTGTGTTAAGTGTTCAACCTGACTGGGATTTAATTGAGGATCCAGGATGGGACTTAATAGAGGAGGTGAGGCCGAGACCGATTCTCACACACAGTGCACCGGCACGCCGGAGGTCATTAAAAGAAGAAATCCTCGACCGTCTCCTTTCAATATGGAAGAAGATATTAAAAATATCAAAGGAGTTTCTTGGACCTCTCCTTCCAATATGGAACAAGATATTTGTATTATCCTGTGTGTTTGCTGTTTTGATGGATCCTTTGTTCTTCTACACTCCTGTCATCAACGAGGACATGAAGTGTCTGGAGTTGGACAAAAACCTGAAGAAAATAGCTCTTGCTTTACGATCTGTTGCAGATCTCTTTTATCTTGTCGATATTATTTTTCAAATTTATCAACTCAACGTCACGTCCAAGATATCAATAAATGGTGCCACATTTCGTTTGGAAAGAGTTAAATCAGCTAAGAAGATTTTGCTGTCATGCATTGTAATTGACACTTTTGCTGTTCTCCCCGTTCCACAGGTAGTATTTTTCATATTTTTTACAAAAAGGAGAGGCTCAAGATCTTTCGTAAGGATGTTTATGAACTCTCTTATTCTATTTCAATATGTACCACGAGTTCTTCGCATCTATCTATCTGGCAATACTCCCAGTATACAGACTCGAGTAGGAATATTGGTTAAAGCTGTATTCAACTTTTTTCCATTCATCCTTGCTGGCCATATACTTGGAGGCATATGGTATTTTTTCGCTATTCAACGAGAGAGAACTTGTTGGGAATATGGATGTCGCGAAAATGGATGTGGATCTGCTAATTTTGATTGTAATGATAATATATTTAGAAATGTCACGCTTCTAAATGTTTTATGCCCTACAAATCCACCAGATGCAACACTCTTCGATTTCGGTATATTTCTTGGCGCTGTTCAATCTGATATGCTGAGATCAACAAATTTTTCGAAGAAGTTATTGCAATGCTTTTGGTGGGGTTTACGAAATCTGAGTTCTTTAGGGCAAAACCTCGAGCCCAGCAGTAGCAACCAGTGGGAAAACGTCTTTGCTGTTTTCACACTTTTAAGCGGCATGATGCTATTCTTAATATATCTCAATGCAACTTTGCAGACATTAAGTGTGCAGTTGGAGAAAATAAGATCAGATGAACGTATATTCAGACGGAAGATGCAGCTGATAAGTCCAGAGATCGATTTATGGTTATCTAAAAACGACCTCCCTAAGGATCTGAAGATGGTTTCAGGCCGAACAGAAAAACATCTCAGGACGGTAATCGTAGAAAACGTACAACGACACCTTCAAGAAAACAAAGATGTTGATGTGGAGAATATCCTCGCTGTTCTTCCCTTGAGACACAGAAGAGGTATCATGAGCCTTCTCCGCTTGACATCACTAAAGAAAGTGTCGATGCTTGAAAGTATGGATGAAAAAGTGTTGAAAGCAATCAGCGAGCATCTTAAGCTGGAGACCTATAACGAGGGCAGCTACATTGTTTCAGAGGGGGAACCACTTGAGAAGATGATGTTCATCACACAAGGCACCGCATGGAGCTACCCACCTACACCTAGCAGTAAGGGTGGAATTACAATTACTTCCTCAGACACGAAGTGGCTTGAGAAAGGTGATTTTTATGGAGAAGAACTTTTAATTTGGGCATTAAAATCTACCCCCTCTTCTGAATTACCCATGTCGACTAGAATTCTTAAGTCCCAAACAAAAGTTGAAGCATTTGCTATAAGGGCTAAGGACTTGAAGACCATTGTTGCTAAGTTCTGGTGGCATTTTAGGACGGAGCTCCGTCACTTAGAGGATTTTCAATTAGAGCATTGGCGTAATTTGGCAGCTTCTTCCGTACAAGAAAATTGGCGCCGCTATTGTGCAAGGGCTAATAAGCGAAAGCTGCGAAATTGGAGGAGTAAATTTATCCAAATAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase_Tyr cNMP_binding

Protein Analysis

659

Amino Acids

76.31

Weight (kDa)

9.39

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 455, 1577, 1905
AccI GTMKAC 2 cut(s) 682, 1730
AccII CGCG 1 cut(s) 819
AciI CCGC 4 cut(s) 1107, 1420, 1581, 1909
AclWI GGATC 6 cut(s) 62, 75, 275, 288, 841, 1272
AcoI YGGCCR 1 cut(s) 745
AcsI RAATTY 4 cut(s) 414, 979, 1737, 1958
AcuI CTGAAG 2 cut(s) 368, 1289
AcyI GRCGYC 1 cut(s) 1906
AdeI CACNNNGTG 2 cut(s) 122, 1647
AfaI GTAC 3 cut(s) 639, 1326, 1893
AfiI CCNNNNNNNGG 1 cut(s) 1261
AflII CTTAAG 2 cut(s) 1496, 1742
AjiI CACGTC 1 cut(s) 435
AjnI CCWGG 1 cut(s) 70
AloI GAACNNNNNNTCC 2 cut(s) 272, 304
Alw21I GWGCWC 2 cut(s) 127, 1836
Alw26I GTCTC 4 cut(s) 97, 173, 1384, 1499
Alw44I GTGCAC 1 cut(s) 123
AlwI GGATC 6 cut(s) 62, 75, 275, 288, 841, 1272
Ama87I CYCGRG 2 cut(s) 690, 1049
AoxI GGCC 3 cut(s) 98, 745, 1282
ApaLI GTGCAC 1 cut(s) 123
ApeKI GCWGC 4 cut(s) 1210, 1521, 1880, 1939
ApoI RAATTY 4 cut(s) 414, 979, 1737, 1958
AspLEI GCGC 2 cut(s) 950, 1908
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 106, 1673
AsuII TTCGAA 1 cut(s) 986
AvaI CYCGRG 2 cut(s) 690, 1049
AvaII GGWCC 1 cut(s) 218
AxyI CCTNAGG 1 cut(s) 1260
BaeGI GKGCMC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 747
BamHI GGATCC 2 cut(s) 67, 280
BanI GGYRCC 3 cut(s) 455, 1577, 1905
BanII GRGCYC 2 cut(s) 1056, 1836
BauI CACGAG 1 cut(s) 642
BbsI GAAGAC 1 cut(s) 1799
Bbv12I GWGCWC 2 cut(s) 127, 1836
BbvI GCAGC 4 cut(s) 1222, 1533, 1892, 1926
BccI CCATC 3 cut(s) 69, 271, 1267
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 4 cut(s) 97, 173, 1384, 1499
BfaI CTAG 2 cut(s) 1605, 1734
BfoI RGCGCY 2 cut(s) 951, 1909
BfrI CTTAAG 2 cut(s) 1496, 1742
BglII AGATCT 2 cut(s) 382, 590
BisI GCNGC 6 cut(s) 1108, 1211, 1522, 1881, 1909, 1940
BlsI GCNGC 6 cut(s) 1109, 1212, 1523, 1882, 1910, 1941
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 2 cut(s) 690, 1049
BmgBI CACGTC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 6 cut(s) 69, 282, 457, 1545, 1579, 1907
BmrFI CCNGG 1 cut(s) 72
BmrI ACTGGG 2 cut(s) 61, 672
BmsI GCATC 6 cut(s) 663, 904, 1104, 1197, 1437, 1501
BmuI ACTGGG 2 cut(s) 61, 672
BpiI GAAGAC 1 cut(s) 1799
BpmI CTGGAG 2 cut(s) 350, 1523
Bpu10I CCTNAGC 1 cut(s) 1782
Bpu14I TTCGAA 1 cut(s) 986
BpuEI CTTGAG 4 cut(s) 571, 1408, 1571, 1673
Bsa29I ATCGAT 1 cut(s) 1230
BsaBI GATNNNNATC 2 cut(s) 832, 1565
BsaHI GRCGYC 1 cut(s) 1906
BsaI GGTCTC 2 cut(s) 97, 1499
Bsc4I CCNNNNNNNGG 1 cut(s) 1261
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 3 cut(s) 56, 678, 1069
Bse21I CCTNAGG 1 cut(s) 1260
Bse3DI GCAATG 1 cut(s) 1007
Bse8I GATNNNNATC 2 cut(s) 832, 1565
BseBI CCWGG 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 1230
BseGI GGATG 6 cut(s) 80, 609, 735, 818, 833, 1468
BseJI GATNNNNATC 2 cut(s) 832, 1565
BseLI CCNNNNNNNGG 1 cut(s) 1261
BseMI GCAATG 1 cut(s) 1007
BseMII CTCAG 4 cut(s) 959, 1019, 1315, 1650
BseNI ACTGG 3 cut(s) 56, 678, 1069
BseRI GAGGAG 2 cut(s) 104, 1966
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 4 cut(s) 1222, 1533, 1892, 1926
BseYI CCCAGC 1 cut(s) 1055
BsgI GTGCAG 1 cut(s) 1181
Bsh1236I CGCG 1 cut(s) 819
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 100, 747, 1284
BshNI GGYRCC 3 cut(s) 455, 1577, 1905
BshVI ATCGAT 1 cut(s) 1230
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 127, 1836
BsiHKCI CYCGRG 2 cut(s) 690, 1049
BsiSI CCGG 2 cut(s) 128, 136
BslFI GGGAC 2 cut(s) 92, 1732
BslI CCNNNNNNNGG 1 cut(s) 1261
BsmAI GTCTC 4 cut(s) 97, 173, 1384, 1499
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 2 cut(s) 92, 1732
BsnI GGCC 3 cut(s) 100, 747, 1284
Bso31I GGTCTC 2 cut(s) 97, 1499
BsoBI CYCGRG 2 cut(s) 690, 1049
Bsp119I TTCGAA 1 cut(s) 986
Bsp1286I GDGCHC 3 cut(s) 127, 1056, 1836
Bsp68I TCGCGA 1 cut(s) 819
BspACI CCGC 4 cut(s) 1107, 1420, 1581, 1909
BspANI GGCC 3 cut(s) 100, 747, 1284
BspCNI CTCAG 4 cut(s) 960, 1020, 1314, 1649
BspDI ATCGAT 1 cut(s) 1230
BspFNI CGCG 1 cut(s) 819
BspHI TCATGA 1 cut(s) 1407
BspLI GGNNCC 6 cut(s) 69, 282, 457, 1545, 1579, 1907
BspPI GGATC 6 cut(s) 62, 75, 275, 288, 841, 1272
BspT104I TTCGAA 1 cut(s) 986
BspT107I GGYRCC 3 cut(s) 455, 1577, 1905
BspTI CTTAAG 2 cut(s) 1496, 1742
BspTNI GGTCTC 2 cut(s) 97, 1499
BsrDI GCAATG 1 cut(s) 1007
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 3 cut(s) 56, 678, 1069
BssAI RCCGGY 1 cut(s) 127
BssNAI GTATAC 1 cut(s) 683
BssNI GRCGYC 1 cut(s) 1906
BssSI CACGAG 1 cut(s) 642
Bst1107I GTATAC 1 cut(s) 683
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 3 cut(s) 122, 167, 1309
Bst6I CTCTTC 3 cut(s) 929, 1393, 1717
BstACI GRCGYC 1 cut(s) 1906
BstAFI CTTAAG 2 cut(s) 1496, 1742
BstBI TTCGAA 1 cut(s) 986
BstC8I GCNNGC 3 cut(s) 133, 745, 1490
BstDEI CTNAG 9 cut(s) 489, 968, 1028, 1260, 1301, 1636, 1782, 1806, 1843
BstENI CCTNNNNNAGG 1 cut(s) 1259
BstF5I GGATG 6 cut(s) 80, 609, 735, 818, 833, 1468
BstFNI CGCG 1 cut(s) 819
BstH2I RGCGCY 2 cut(s) 951, 1909
BstHHI GCGC 2 cut(s) 950, 1908
BstMAI GTCTC 4 cut(s) 97, 173, 1384, 1499
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 4 cut(s) 1419, 1498, 1778, 1939
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 127
BstUI CGCG 1 cut(s) 819
BstV1I GCAGC 4 cut(s) 1222, 1533, 1892, 1926
BstV2I GAAGAC 1 cut(s) 1799
BstX2I RGATCY 6 cut(s) 67, 280, 382, 590, 833, 1264
BstXI CCANNNNNNTGG 1 cut(s) 755
BstYI RGATCY 6 cut(s) 67, 280, 382, 590, 833, 1264
BstZ17I GTATAC 1 cut(s) 683
Bsu15I ATCGAT 1 cut(s) 1230
Bsu36I CCTNAGG 1 cut(s) 1260
BsuRI GGCC 3 cut(s) 100, 747, 1284
BsuTUI ATCGAT 1 cut(s) 1230
BtrI CACGTC 1 cut(s) 435
BtsCI GGATG 6 cut(s) 80, 609, 735, 818, 833, 1468
BtsIMutI CAGTG 2 cut(s) 127, 1076
BtuMI TCGCGA 1 cut(s) 819
Cac8I GCNNGC 3 cut(s) 133, 745, 1490
CciI TCATGA 1 cut(s) 1407
CfoI GCGC 2 cut(s) 950, 1908
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 218
ClaI ATCGAT 1 cut(s) 1230
Csp6I GTAC 3 cut(s) 638, 1325, 1892
CviAII CATG 7 cut(s) 12, 319, 507, 1111, 1408, 1584, 1726
CviQI GTAC 3 cut(s) 638, 1325, 1892
DdeI CTNAG 9 cut(s) 489, 968, 1028, 1260, 1301, 1636, 1782, 1806, 1843
DinI GGCGCC 1 cut(s) 1907
DraIII CACNNNGTG 2 cut(s) 122, 1647
EaeI YGGCCR 1 cut(s) 745
Eam1104I CTCTTC 3 cut(s) 929, 1393, 1717
EarI CTCTTC 3 cut(s) 929, 1393, 1717
Ecl136II GAGCTC 1 cut(s) 1834
Eco24I GRGCYC 2 cut(s) 1056, 1836
Eco31I GGTCTC 2 cut(s) 97, 1499
Eco32I GATATC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 1834
Eco57I CTGAAG 2 cut(s) 368, 1289
Eco81I CCTNAGG 1 cut(s) 1260
Eco88I CYCGRG 2 cut(s) 690, 1049
EcoICRI GAGCTC 1 cut(s) 1834
EcoNI CCTNNNNNAGG 1 cut(s) 1259
EcoRI GAATTC 1 cut(s) 1737
EcoRII CCWGG 1 cut(s) 70
EcoRV GATATC 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 512
EcoT38I GRGCYC 2 cut(s) 1056, 1836
EgeI GGCGCC 1 cut(s) 1907
EheI GGCGCC 1 cut(s) 1907
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 7 cut(s) 15, 322, 510, 1114, 1411, 1587, 1729
FaqI GGGAC 2 cut(s) 92, 1732
FatI CATG 7 cut(s) 11, 318, 506, 1110, 1407, 1583, 1725
FauNDI CATATG 1 cut(s) 764
FblI GTMKAC 2 cut(s) 682, 1730
Fnu4HI GCNGC 6 cut(s) 1108, 1211, 1522, 1881, 1909, 1940
FokI GGATG 6 cut(s) 87, 616, 722, 825, 840, 1475
FriOI GRGCYC 2 cut(s) 1056, 1836
Fsp4HI GCNGC 6 cut(s) 1108, 1211, 1522, 1881, 1909, 1940
FspBI CTAG 2 cut(s) 1605, 1734
GlaI GCGC 2 cut(s) 949, 1907
GluI GCNGC 6 cut(s) 1108, 1211, 1522, 1881, 1909, 1940
GsaI CCCAGC 1 cut(s) 1059
GsuI CTGGAG 2 cut(s) 350, 1523
HaeII RGCGCY 2 cut(s) 951, 1909
HaeIII GGCC 3 cut(s) 100, 747, 1284
HapII CCGG 2 cut(s) 128, 136
HhaI GCGC 2 cut(s) 950, 1908
Hin1I GRCGYC 1 cut(s) 1906
Hin1II CATG 7 cut(s) 15, 322, 510, 1114, 1411, 1587, 1729
Hin6I GCGC 2 cut(s) 948, 1906
HinP1I GCGC 2 cut(s) 948, 1906
HincII GTYRAC 2 cut(s) 7, 1731
HindII GTYRAC 2 cut(s) 7, 1731
HinfI GANTC 2 cut(s) 109, 688
HpaII CCGG 2 cut(s) 128, 136
HphI GGTGA 2 cut(s) 106, 1673
Hpy166II GTNNAC 5 cut(s) 7, 125, 683, 1019, 1731
Hpy188I TCNGA 8 cut(s) 961, 1029, 1183, 1199, 1269, 1537, 1639, 1717
Hpy188III TCNNGA 7 cut(s) 329, 588, 818, 1223, 1303, 1340, 1408
Hpy8I GTNNAC 5 cut(s) 7, 125, 683, 1019, 1731
HpyAV CCTTC 3 cut(s) 236, 1346, 1424
HpyCH4III ACNGT 3 cut(s) 122, 167, 1309
HpyCH4IV ACGT 5 cut(s) 429, 434, 1080, 1189, 1323
HpyF10VI GCNNNNNNNGC 4 cut(s) 1419, 1498, 1778, 1939
HpyF3I CTNAG 9 cut(s) 489, 968, 1028, 1260, 1301, 1636, 1782, 1806, 1843
HpySE526I ACGT 5 cut(s) 429, 434, 1080, 1189, 1323
Hsp92I GRCGYC 1 cut(s) 1906
Hsp92II CATG 7 cut(s) 15, 322, 510, 1114, 1411, 1587, 1729
HspAI GCGC 2 cut(s) 948, 1906
KasI GGCGCC 1 cut(s) 1905
LmnI GCTCC 3 cut(s) 1587, 1831, 1839
Lsp1109I GCAGC 4 cut(s) 1222, 1533, 1892, 1926
LweI GCATC 6 cut(s) 663, 904, 1104, 1197, 1437, 1501
MaeI CTAG 2 cut(s) 1605, 1734
MaeII ACGT 5 cut(s) 429, 434, 1080, 1189, 1323
MaeIII GTNAC 3 cut(s) 430, 874, 1838
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 6 cut(s) 67, 280, 382, 590, 833, 1264
MhlI GDGCHC 3 cut(s) 127, 1056, 1836
MlsI TGGCCA 1 cut(s) 747
MluNI TGGCCA 1 cut(s) 747
Mly113I GGCGCC 1 cut(s) 1906
MlyI GAGTC 1 cut(s) 682
MmeI TCCRAC 2 cut(s) 315, 1146
Mox20I TGGCCA 1 cut(s) 747
Mph1103I ATGCAT 1 cut(s) 512
MscI TGGCCA 1 cut(s) 747
Msp20I TGGCCA 1 cut(s) 747
MspA1I CMGCKG 1 cut(s) 1213
MspCI CTTAAG 2 cut(s) 1496, 1742
MspI CCGG 2 cut(s) 128, 136
MspR9I CCNGG 1 cut(s) 72
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 819
MwoI GCNNNNNNNGC 4 cut(s) 1419, 1498, 1778, 1939
NarI GGCGCC 1 cut(s) 1906
NdeI CATATG 1 cut(s) 764
NlaIII CATG 7 cut(s) 15, 322, 510, 1114, 1411, 1587, 1729
NlaIV GGNNCC 6 cut(s) 69, 282, 457, 1545, 1579, 1907
NmeAIII GCCGAG 1 cut(s) 126
NmuCI GTSAC 3 cut(s) 430, 874, 1838
NruI TCGCGA 1 cut(s) 819
NsiI ATGCAT 1 cut(s) 512
NspV TTCGAA 1 cut(s) 986
PaeR7I CTCGAG 2 cut(s) 690, 1049
PagI TCATGA 1 cut(s) 1407
PcsI WCGNNNNNNNCGW 1 cut(s) 1320
PfeI GAWTC 1 cut(s) 109
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 6 cut(s) 1109, 1212, 1523, 1882, 1910, 1941
PleI GAGTC 1 cut(s) 682
PluTI GGCGCC 1 cut(s) 1909
PpsI GAGTC 1 cut(s) 682
Psp124BI GAGCTC 1 cut(s) 1836
Psp6I CCWGG 1 cut(s) 70
PspFI CCCAGC 1 cut(s) 1055
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 6 cut(s) 69, 282, 457, 1545, 1579, 1907
PspPI GGNCC 1 cut(s) 218
PspXI VCTCGAGB 2 cut(s) 690, 1049
PsrI GAACNNNNNNTAC 2 cut(s) 630, 662
PsuI RGATCY 6 cut(s) 67, 280, 382, 590, 833, 1264
PvuII CAGCTG 1 cut(s) 1213
RruI TCGCGA 1 cut(s) 819
RsaI GTAC 3 cut(s) 639, 1326, 1893
RsaNI GTAC 3 cut(s) 638, 1325, 1892
SacI GAGCTC 1 cut(s) 1836
SalI GTCGAC 1 cut(s) 1729
SatI GCNGC 6 cut(s) 1108, 1211, 1522, 1881, 1909, 1940
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 682
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 3 cut(s) 127, 1056, 1836
SfaNI GCATC 6 cut(s) 663, 904, 1104, 1197, 1437, 1501
SfoI GGCGCC 1 cut(s) 1907
Sfr274I CTCGAG 2 cut(s) 690, 1049
SfuI TTCGAA 1 cut(s) 986
SinI GGWCC 1 cut(s) 218
SlaI CTCGAG 2 cut(s) 690, 1049
SmlI CTYRAG 8 cut(s) 586, 690, 1049, 1387, 1496, 1550, 1652, 1742
SmoI CTYRAG 8 cut(s) 586, 690, 1049, 1387, 1496, 1550, 1652, 1742
SsiI CCGC 4 cut(s) 1107, 1420, 1581, 1909
SspDI GGCGCC 1 cut(s) 1905
SspI AATATT 1 cut(s) 702
SspMI CTAG 2 cut(s) 1605, 1734
SstI GAGCTC 1 cut(s) 1836
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 3 cut(s) 122, 167, 1309
TaiI ACGT 5 cut(s) 432, 437, 1083, 1192, 1326
TaqI TCGA 9 cut(s) 162, 399, 691, 927, 986, 1050, 1230, 1445, 1730
TaqII GACCGA 1 cut(s) 121
TauI GCSGC 2 cut(s) 1110, 1911
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 2 cut(s) 127, 1076
TseFI GTSAC 3 cut(s) 430, 874, 1838
TseI GCWGC 4 cut(s) 1210, 1521, 1880, 1939
Tsp45I GTSAC 3 cut(s) 430, 874, 1838
TspDTI ATGAA 7 cut(s) 335, 550, 626, 724, 1200, 1479, 1555
TspGWI ACGGA 4 cut(s) 1216, 1826, 1844, 1879
TspRI CASTG 2 cut(s) 127, 1076
Vha464I CTTAAG 2 cut(s) 1496, 1742
VneI GTGCAC 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 218
XagI CCTNNNNNAGG 1 cut(s) 1259
XapI RAATTY 4 cut(s) 414, 979, 1737, 1958
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XhoI CTCGAG 2 cut(s) 690, 1049
XmiI GTMKAC 2 cut(s) 682, 1730
XspI CTAG 2 cut(s) 1605, 1734
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.