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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 207, 237 |
| AclWI | GGATC | 3 cut(s) | 172, 234, 247 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AfaI | GTAC | 1 cut(s) | 146 |
| AgsI | TTSAA | 1 cut(s) | 35 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 92, 124 |
| AluBI | AGCT | 2 cut(s) | 9, 56 |
| AluI | AGCT | 2 cut(s) | 9, 56 |
| Alw26I | GTCTC | 1 cut(s) | 180 |
| AlwI | GGATC | 3 cut(s) | 172, 234, 247 |
| AoxI | GGCC | 3 cut(s) | 3, 250, 271 |
| ApaI | GGGCCC | 1 cut(s) | 254 |
| ApeKI | GCWGC | 2 cut(s) | 152, 155 |
| AspS9I | GGNCC | 4 cut(s) | 250, 251, 271, 322 |
| AsuC2I | CCSGG | 1 cut(s) | 306 |
| AvaII | GGWCC | 1 cut(s) | 322 |
| AxyI | CCTNAGG | 1 cut(s) | 334 |
| BaeGI | GKGCMC | 2 cut(s) | 254, 293 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 1 cut(s) | 239 |
| BanII | GRGCYC | 1 cut(s) | 254 |
| BbvI | GCAGC | 2 cut(s) | 139, 142 |
| BcnI | CCSGG | 1 cut(s) | 306 |
| BcoDI | GTCTC | 1 cut(s) | 180 |
| BisI | GCNGC | 3 cut(s) | 153, 156, 208 |
| BlsI | GCNGC | 3 cut(s) | 154, 157, 209 |
| Bme1390I | CCNGG | 1 cut(s) | 306 |
| Bme18I | GGWCC | 1 cut(s) | 322 |
| BmgT120I | GGNCC | 4 cut(s) | 250, 251, 271, 322 |
| BmiI | GGNNCC | 2 cut(s) | 241, 252 |
| BmrFI | CCNGG | 1 cut(s) | 306 |
| BpmI | CTGGAG | 1 cut(s) | 204 |
| BpuMI | CCSGG | 1 cut(s) | 306 |
| Bse1I | ACTGG | 1 cut(s) | 243 |
| Bse21I | CCTNAGG | 1 cut(s) | 334 |
| BseGI | GGATG | 1 cut(s) | 28 |
| BseNI | ACTGG | 1 cut(s) | 243 |
| BseSI | GKGCMC | 2 cut(s) | 254, 293 |
| BseXI | GCAGC | 2 cut(s) | 139, 142 |
| BshFI | GGCC | 3 cut(s) | 5, 252, 273 |
| BsiSI | CCGG | 1 cut(s) | 305 |
| BsmAI | GTCTC | 1 cut(s) | 180 |
| BsmBI | CGTCTC | 1 cut(s) | 180 |
| BsnI | GGCC | 3 cut(s) | 5, 252, 273 |
| Bsp120I | GGGCCC | 1 cut(s) | 250 |
| Bsp1286I | GDGCHC | 2 cut(s) | 254, 293 |
| Bsp143I | GATC | 2 cut(s) | 164, 239 |
| BspACI | CCGC | 2 cut(s) | 207, 237 |
| BspANI | GGCC | 3 cut(s) | 5, 252, 273 |
| BspLI | GGNNCC | 2 cut(s) | 241, 252 |
| BspPI | GGATC | 3 cut(s) | 172, 234, 247 |
| BspQI | GCTCTTC | 1 cut(s) | 46 |
| BsrI | ACTGG | 1 cut(s) | 243 |
| BssMI | GATC | 2 cut(s) | 164, 239 |
| Bst4CI | ACNGT | 2 cut(s) | 149, 191 |
| Bst6I | CTCTTC | 1 cut(s) | 46 |
| BstC8I | GCNNGC | 1 cut(s) | 7 |
| BstDEI | CTNAG | 1 cut(s) | 334 |
| BstF5I | GGATG | 1 cut(s) | 28 |
| BstKTI | GATC | 2 cut(s) | 167, 242 |
| BstMAI | GTCTC | 1 cut(s) | 180 |
| BstMBI | GATC | 2 cut(s) | 164, 239 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 62 |
| BstSCI | CCNGG | 1 cut(s) | 304 |
| BstSLI | GKGCMC | 2 cut(s) | 254, 293 |
| BstV1I | GCAGC | 2 cut(s) | 139, 142 |
| BstX2I | RGATCY | 1 cut(s) | 239 |
| BstYI | RGATCY | 1 cut(s) | 239 |
| Bsu36I | CCTNAGG | 1 cut(s) | 334 |
| BsuRI | GGCC | 3 cut(s) | 5, 252, 273 |
| BtsCI | GGATG | 1 cut(s) | 28 |
| BtsIMutI | CAGTG | 1 cut(s) | 154 |
| Cac8I | GCNNGC | 1 cut(s) | 7 |
| Cfr13I | GGNCC | 4 cut(s) | 250, 251, 271, 322 |
| Csp6I | GTAC | 1 cut(s) | 145 |
| CviJI | RGCY | 9 cut(s) | 5, 9, 43, 56, 227, 252, 273, 309, 352 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 9, 43, 56, 227, 252, 273, 309, 352 |
| CviQI | GTAC | 1 cut(s) | 145 |
| DdeI | CTNAG | 1 cut(s) | 334 |
| DpnI | GATC | 2 cut(s) | 166, 241 |
| DpnII | GATC | 2 cut(s) | 164, 239 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 46 |
| EarI | CTCTTC | 1 cut(s) | 46 |
| EciI | GGCGGA | 1 cut(s) | 252 |
| Eco24I | GRGCYC | 1 cut(s) | 254 |
| Eco47I | GGWCC | 1 cut(s) | 322 |
| Eco81I | CCTNAGG | 1 cut(s) | 334 |
| EcoO109I | RGGNCCY | 1 cut(s) | 251 |
| EcoT38I | GRGCYC | 1 cut(s) | 254 |
| Esp3I | CGTCTC | 1 cut(s) | 180 |
| FaiI | YATR | 6 cut(s) | 12, 46, 59, 91, 93, 248 |
| FauNDI | CATATG | 1 cut(s) | 91 |
| Fnu4HI | GCNGC | 3 cut(s) | 153, 156, 208 |
| FokI | GGATG | 1 cut(s) | 35 |
| FriOI | GRGCYC | 1 cut(s) | 254 |
| Fsp4HI | GCNGC | 3 cut(s) | 153, 156, 208 |
| GluI | GCNGC | 3 cut(s) | 153, 156, 208 |
| GsuI | CTGGAG | 1 cut(s) | 204 |
| HaeIII | GGCC | 3 cut(s) | 5, 252, 273 |
| HapII | CCGG | 1 cut(s) | 305 |
| HpaII | CCGG | 1 cut(s) | 305 |
| HpyAV | CCTTC | 1 cut(s) | 75 |
| HpyCH4III | ACNGT | 2 cut(s) | 149, 191 |
| HpyCH4V | TGCA | 1 cut(s) | 200 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 62 |
| HpyF3I | CTNAG | 1 cut(s) | 334 |
| Kzo9I | GATC | 2 cut(s) | 164, 239 |
| LguI | GCTCTTC | 1 cut(s) | 46 |
| LpnPI | CCDG | 6 cut(s) | 19, 168, 186, 256, 299, 318 |
| Lsp1109I | GCAGC | 2 cut(s) | 139, 142 |
| MalI | GATC | 2 cut(s) | 166, 241 |
| MboI | GATC | 2 cut(s) | 164, 239 |
| MboII | GAAGA | 3 cut(s) | 63, 84, 109 |
| MflI | RGATCY | 1 cut(s) | 239 |
| MhlI | GDGCHC | 2 cut(s) | 254, 293 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MmeI | TCCRAC | 1 cut(s) | 300 |
| MnlI | CCTC | 4 cut(s) | 98, 135, 167, 264 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 3 cut(s) | 68, 222, 364 |
| MslI | CAYNNNNRTG | 1 cut(s) | 215 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 1 cut(s) | 305 |
| MspR9I | CCNGG | 1 cut(s) | 306 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 62 |
| NciI | CCSGG | 1 cut(s) | 306 |
| NdeI | CATATG | 1 cut(s) | 91 |
| NdeII | GATC | 2 cut(s) | 164, 239 |
| NlaIV | GGNNCC | 2 cut(s) | 241, 252 |
| PciSI | GCTCTTC | 1 cut(s) | 46 |
| PkrI | GCNGC | 3 cut(s) | 154, 157, 209 |
| PspN4I | GGNNCC | 2 cut(s) | 241, 252 |
| PspOMI | GGGCCC | 1 cut(s) | 250 |
| PspPI | GGNCC | 4 cut(s) | 250, 251, 271, 322 |
| PsuI | RGATCY | 1 cut(s) | 239 |
| RsaI | GTAC | 1 cut(s) | 146 |
| RsaNI | GTAC | 1 cut(s) | 145 |
| RseI | CAYNNNNRTG | 1 cut(s) | 215 |
| SapI | GCTCTTC | 1 cut(s) | 46 |
| SaqAI | TTAA | 3 cut(s) | 68, 222, 364 |
| SatI | GCNGC | 3 cut(s) | 153, 156, 208 |
| Sau3AI | GATC | 2 cut(s) | 164, 239 |
| Sau96I | GGNCC | 4 cut(s) | 250, 251, 271, 322 |
| ScrFI | CCNGG | 1 cut(s) | 306 |
| SduI | GDGCHC | 2 cut(s) | 254, 293 |
| SetI | ASST | 6 cut(s) | 11, 58, 109, 146, 327, 335 |
| SgeI | CNNG | 9 cut(s) | 18, 195, 213, 255, 280, 298, 305, 317, 318 |
| SinI | GGWCC | 1 cut(s) | 322 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 215 |
| SsiI | CCGC | 2 cut(s) | 207, 237 |
| StyD4I | CCNGG | 1 cut(s) | 304 |
| TaaI | ACNGT | 2 cut(s) | 149, 191 |
| TauI | GCSGC | 1 cut(s) | 210 |
| Tru1I | TTAA | 3 cut(s) | 68, 222, 364 |
| Tru9I | TTAA | 3 cut(s) | 68, 222, 364 |
| TscAI | CASTG | 1 cut(s) | 154 |
| TseI | GCWGC | 2 cut(s) | 152, 155 |
| TspGWI | ACGGA | 1 cut(s) | 63 |
| TspRI | CASTG | 1 cut(s) | 154 |
| VpaK11BI | GGWCC | 1 cut(s) | 322 |