Prupe.2G223600_v2.0.a1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000017
Physical Location & Seq
Forward (+)
25081552 .. 25086224
4673 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G223600.1

Sequence Viewer

Length: 2907 bp
ATGGCCAACCCCGATGTAAGTTCTGTTGTGGAGAAGTCGGAAGAGAAAGCTGGACGTGATTCAGACTCAGATTCAAAATCATACTCAAGTTCAGACACTACAACGGGAGAATCTTCCATGGAAGAATGGCAGATATCAAGAAAAAAAAGGCCAATGATGATGATAGTGAAAATTCTTGAGCTGTTTCACTGGATCCTTGCAAGGTGGAAGAAGATGTTTGTAACATCATGTGTGTTTGCTGTTTCACTGGATCCTTTGTTCCTCTACATTCCTATCATCGATCAGGATATGAACTGTCTGAGTTTGGACCAAAATCTGAAGATAACAGCTCTCGCATTAAGATCTGTCACAGATCTCTTTTATATTATGGACATCATTATTGAAATTTATACATCTGGGATCTGTTCAAGTTTAACCAATGAATTTCATCACAGCTCCAAATTACAATTCTTGGGGAACACTTTCTTGCCGAAAGTAGCTAAGACGATTTGGCAGTCATACATCTTAATTGATATTTTAGCTATCATTCCCCTTCCACAGGTACTGATTCTCACTTTCTTTTCAAAAATGAGGGCAACGAGATCCTTGGGTACAAGGAAGTTTATTATGAACTTTTTTGTTATGGTGCAATATTTACCACGGGTTATTCGCATATATCTATCATGTAAGGCACCTAAAATGTCTCACAAGAGCGAGACTCCAGTATGGGTTAAAGGTGTATTGAATTTCTTTATGTACATCCTTGCTAGTCATGTACTTGGAGCCGTATGGTACTTTTTTGCTATTCAACAAATGACAGTTTGTTGGGCATATGCATGTCGAAATGAAAATGGGTGCGACTCCACTACTTTTGGTTGTCATGACCGTACATCCAAAAATGATTTATGCCCTGTAAGTTCACCAAATACAACATTCTTCGAATTTGGGATATTTCTTAGTCTCCTTCAGTCTGGTGTGCCCTCGTCAACAAATTTTCTACAGAAGTTCACAAACTGCTTTTGTTGGGGCCTACGAAATTTGAGTTCTCTTGGTTCTAATCTCCAGCCCAGTACCAACACTTGGGAAAACCTCTTTGTGGTTTTTATTTCTATAATTGGCTTGCTACTGTTTATATATCTCATTGGAAATCTGCAGACATATTTGTCCTTGGACACTACAAGAATAGAGGCGCATAGACACAAGATGAAAATTAAACGGAAGATGGAAGAGAAAGGTCAAGAGCTAGAATTATGGTTGCCTAAAAATGGCATCCCTGAAAAGTCACATAAGAATATAAAGTTGCAGATCATGGAAAAGGTAGAACAAGAATTTGAAGAAAACAGGGATGTTGATTTAGATAATTTCATCTCTACTCTTCCCTCAGATCTTGAAAACCAGATCAAAAGTTATATGCCGTTCACTAGGTTGAAAATGGTGCGAGTCCTTCAAAACATGGATGAACAAGTGTTGAAAGCAATTTGTCAGCATCTAAAGCCCAGGAAGTATACTGAAGACAAGCTCATTCTTCGAGAGGGTGAACCACTTAAAATGATGCTCTTCATTGTGGAAGGACATGTAGCCATTGAAAAGAAAGGTGTTTCTATTTTGAATCAAGGTGCCAGAGAATTATATGGAGAAAAGCTTCTAGCTTGGCCATTCTCGACATCTTTTCCAAAGAAGTTACCCACCGCAACAGAGTCTGCTAGGGCAATTGGTGATGTTGAAGCCCTTATTCTAATGGCCAACGACATGAAGGGTGTAGTCTTTAAATTCGGGGTGCATTTCATCAAAAAGTATGGCAAACTCAAAGAAAAATTGGCTAATCATCATCTAAGACCTATGGGAGCAGCACCAGCATCTATGGACCTAGCACCAGCATCTATGGGAGCAGCACCAGCATCTATGGAGGTACCACTCAGACTCTTTACTGAAAAAGAACTTAAGAAGGCCACACAAAATTACAATGCAAGTGCAAGGATTGGTGAAGGAGGTTATGGAATAGTTTACAAAGGAATACTGCCAGATAAAACAGTTGTTGCCATAAAGAAGTCCAAAATGCATGCCCCAGCCATGAGCGTGAACTCCGTTAATGAGGCGTTTATTCTTTCTCAGATCAACCATAGAAACATCGTGCAGCTTTTAGGTTGTTGTTTAGAGGCAAAAACGAATTTAATGGTTTACGAGTTCATCGACAACGGGACTCTGTCTGAGCACATTCACAACGAAGGCAAAGGAGAGAAACTCTCATTTGAATTACGACTGAAGATAGCAGCAGAAATTGCAGCAGCACTATCATACGTGCACTCCATGTCAATCATACACCGAGATGTAAAGACAGCAAATATACTATTGAATCGAAATTACACAGCAAAGGTTTCAGACTTTGGAGGTTCAAAATTGCTTCATGAAGATCAAGATTCCGTGTCAACTTTAGTGCAAGGGACACTCGGATACTTAGATCCTGAATATCTTATGTCAAACACGCTAACAGAAAAGAGCGATGTCTACAGCTTTGGAGTTGTCCTATTGGAGCTACTAACAAGTCGAAGGGCAGTTTCTTTTGAAAGGCCTGAGGAAGAGAGAAACCTAGCAAGCTTCTTTCTTTATTTAGCGGAACAAGGACACTTAGATCAAATTCTTGATGGTGAAATAATCAACCGGGGAAATTATGTAACGGCCGAAAAAGTAAGCTATCTAGCAAGAAGATGTTTGATGGTTAGAGCGAAGGAAAGGCCTTCTATGAAAGAAGTAGCCATCGAGCTCGAGCAGCTAATTACGGCAACACATCTTGCAGAAAAGGCTAATTTCTCTTCATCTTCCGAAGAGACTAATTGGTTTCTTCAGCCACCTTCAAACTCTTATGTTGTGGATGTTAGAGATGAAGGTGATGATGTTGCTTCTAGTGGTTCAATTAATTCTTGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase Pkinase_Tyr cNMP_binding

Protein Analysis

969

Amino Acids

109.52

Weight (kDa)

7.98

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1141
Acc65I GGTACC 1 cut(s) 1888
AccB1I GGYRCC 3 cut(s) 670, 1595, 1888
AccB7I CCANNNNNTGG 1 cut(s) 1059
AccI GTMKAC 2 cut(s) 1484, 2484
AciI CCGC 2 cut(s) 1668, 2591
AclWI GGATC 7 cut(s) 187, 200, 245, 258, 407, 576, 2432
AcoI YGGCCR 4 cut(s) 3, 1631, 1719, 2655
AcuI CTGAAG 5 cut(s) 338, 929, 1509, 2261, 2804
AfaI GTAC 8 cut(s) 543, 592, 737, 756, 773, 868, 1051, 1890
AfiI CCNNNNNNNGG 4 cut(s) 538, 1059, 1075, 1244
AflII CTTAAG 1 cut(s) 1919
AflIII ACRYGT 1 cut(s) 1552
AjiI CACGTC 1 cut(s) 56
AjnI CCWGG 1 cut(s) 1475
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
Alw21I GWGCWC 3 cut(s) 2193, 2283, 2742
Alw26I GTCTC 4 cut(s) 687, 689, 944, 2798
Alw44I GTGCAC 1 cut(s) 2279
AlwI GGATC 7 cut(s) 187, 200, 245, 258, 407, 576, 2432
AlwNI CAGNNNCTG 2 cut(s) 544, 1679
Ama87I CYCGRG 1 cut(s) 2741
AoxI GGCC 9 cut(s) 3, 149, 1006, 1631, 1719, 1926, 2546, 2655, 2711
ApaLI GTGCAC 1 cut(s) 2279
ApeKI GCWGC 7 cut(s) 1826, 1868, 2113, 2249, 2261, 2264, 2746
AseI ATTAAT 1 cut(s) 2892
Asp700I GAANNNNTTC 2 cut(s) 461, 1620
Asp718I GGTACC 1 cut(s) 1888
AspLEI GCGC 1 cut(s) 1171
AspS9I GGNCC 3 cut(s) 307, 1006, 1843
AsuC2I CCSGG 1 cut(s) 2639
AsuHPI GGTGA 6 cut(s) 891, 1526, 1706, 1973, 2636, 2876
AsuII TTCGAA 1 cut(s) 918
AvaI CYCGRG 1 cut(s) 2741
AvaII GGWCC 2 cut(s) 307, 1843
AxyI CCTNAGG 1 cut(s) 2550
BaeGI GKGCMC 2 cut(s) 960, 2283
BalI TGGCCA 3 cut(s) 5, 1633, 1721
BamHI GGATCC 2 cut(s) 192, 250
BanI GGYRCC 3 cut(s) 670, 1595, 1888
BanII GRGCYC 1 cut(s) 2742
BbsI GAAGAC 1 cut(s) 1497
Bbv12I GWGCWC 3 cut(s) 2193, 2283, 2742
BbvI GCAGC 7 cut(s) 1838, 1880, 2125, 2261, 2273, 2276, 2758
BccI CCATC 4 cut(s) 1195, 2615, 2686, 2741
BceAI ACGGC 4 cut(s) 749, 1378, 2670, 2772
BciT130I CCWGG 1 cut(s) 1477
BciVI GTATCC 1 cut(s) 2423
BcnI CCSGG 1 cut(s) 2639
BcoDI GTCTC 4 cut(s) 687, 689, 944, 2798
BfaI CTAG 9 cut(s) 747, 1223, 1401, 1625, 1683, 1847, 2567, 2675, 2880
BfmI CTRYAG 3 cut(s) 977, 1130, 2485
BfrI CTTAAG 1 cut(s) 1919
BfuI GTATCC 1 cut(s) 2423
BglII AGATCT 3 cut(s) 341, 352, 1363
BisI GCNGC 7 cut(s) 1827, 1869, 2114, 2250, 2262, 2265, 2747
BlsI GCNGC 7 cut(s) 1828, 1870, 2115, 2251, 2263, 2266, 2748
Bme1390I CCNGG 2 cut(s) 1477, 2639
Bme18I GGWCC 2 cut(s) 307, 1843
BmeT110I CYCGRG 1 cut(s) 2741
BmgBI CACGTC 1 cut(s) 56
BmgT120I GGNCC 3 cut(s) 307, 1006, 1843
BmiI GGNNCC 7 cut(s) 194, 252, 672, 763, 1007, 1597, 1890
BmrFI CCNGG 2 cut(s) 1477, 2639
BmrI ACTGGG 1 cut(s) 1041
BmsI GCATC 6 cut(s) 1257, 1474, 1521, 1844, 1865, 1886
BmuI ACTGGG 1 cut(s) 1041
BpiI GAAGAC 1 cut(s) 1497
BplI GAGNNNNNCTC 6 cut(s) 682, 714, 2205, 2237, 2207, 2239
BpmI CTGGAG 2 cut(s) 684, 1025
Bpu14I TTCGAA 1 cut(s) 918
BpuEI CTTGAG 2 cut(s) 70, 197
BpuMI CCSGG 1 cut(s) 2639
Bsa29I ATCGAT 1 cut(s) 279
BsaAI YACGTR 1 cut(s) 2278
BsaJI CCNNGG 6 cut(s) 117, 585, 638, 1146, 1475, 2638
BsaXI ACNNNNNCTCC 2 cut(s) 2267, 2297
Bsc4I CCNNNNNNNGG 4 cut(s) 538, 1059, 1075, 1244
Bse1I ACTGG 4 cut(s) 194, 252, 701, 1047
Bse21I CCTNAGG 1 cut(s) 2550
BseBI CCWGG 1 cut(s) 1477
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 6 cut(s) 117, 585, 638, 1146, 1475, 2638
BseGI GGATG 6 cut(s) 738, 869, 1248, 1330, 1441, 2854
BseLI CCNNNNNNNGG 4 cut(s) 538, 1059, 1075, 1244
BseMII CTCAG 7 cut(s) 81, 290, 1374, 1909, 2102, 2178, 2541
BseNI ACTGG 4 cut(s) 194, 252, 701, 1047
BseSI GKGCMC 2 cut(s) 960, 2283
BseX3I CGGCCG 1 cut(s) 2655
BseXI GCAGC 7 cut(s) 1838, 1880, 2125, 2261, 2273, 2276, 2758
BseYI CCCAGC 1 cut(s) 2044
BsgI GTGCAG 1 cut(s) 2132
Bsh1285I CGRYCG 1 cut(s) 2658
BshFI GGCC 9 cut(s) 5, 151, 1008, 1633, 1721, 1928, 2548, 2657, 2713
BshNI GGYRCC 3 cut(s) 670, 1595, 1888
BshVI ATCGAT 1 cut(s) 279
BsiEI CGRYCG 1 cut(s) 2658
BsiHKAI GWGCWC 3 cut(s) 2193, 2283, 2742
BsiHKCI CYCGRG 1 cut(s) 2741
BsiSI CCGG 1 cut(s) 2638
BslFI GGGAC 2 cut(s) 2191, 2434
BslI CCNNNNNNNGG 4 cut(s) 538, 1059, 1075, 1244
BsmAI GTCTC 4 cut(s) 687, 689, 944, 2798
BsmFI GGGAC 2 cut(s) 2191, 2434
BsnI GGCC 9 cut(s) 5, 151, 1008, 1633, 1721, 1928, 2548, 2657, 2713
BsoBI CYCGRG 1 cut(s) 2741
Bsp119I TTCGAA 1 cut(s) 918
Bsp1286I GDGCHC 4 cut(s) 960, 2193, 2283, 2742
Bsp1407I TGTACA 1 cut(s) 735
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 2 cut(s) 1668, 2591
BspANI GGCC 9 cut(s) 5, 151, 1008, 1633, 1721, 1928, 2548, 2657, 2713
BspCNI CTCAG 7 cut(s) 80, 291, 1373, 1908, 2101, 2179, 2542
BspDI ATCGAT 1 cut(s) 279
BspHI TCATGA 2 cut(s) 859, 2383
BspLI GGNNCC 7 cut(s) 194, 252, 672, 763, 1007, 1597, 1890
BspMAI CTGCAG 1 cut(s) 1134
BspPI GGATC 7 cut(s) 187, 200, 245, 258, 407, 576, 2432
BspQI GCTCTTC 1 cut(s) 1541
BspT104I TTCGAA 1 cut(s) 918
BspT107I GGYRCC 3 cut(s) 670, 1595, 1888
BspTI CTTAAG 1 cut(s) 1919
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 4 cut(s) 194, 252, 701, 1047
BssECI CCNNGG 6 cut(s) 117, 585, 638, 1146, 1475, 2638
BssNAI GTATAC 1 cut(s) 1485
BssT1I CCWWGG 3 cut(s) 117, 585, 1146
Bst1107I GTATAC 1 cut(s) 1485
Bst2UI CCWGG 1 cut(s) 1477
Bst4CI ACNGT 5 cut(s) 296, 799, 866, 1107, 2011
Bst6I CTCTTC 7 cut(s) 36, 1200, 1359, 1541, 2550, 2794, 2796
BstAFI CTTAAG 1 cut(s) 1919
BstAPI GCANNNNNTGC 1 cut(s) 2258
BstAUI TGTACA 1 cut(s) 735
BstBAI YACGTR 1 cut(s) 2278
BstBI TTCGAA 1 cut(s) 918
BstC8I GCNNGC 3 cut(s) 1100, 2040, 2572
BstDSI CCRYGG 2 cut(s) 117, 638
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 6 cut(s) 738, 869, 1248, 1330, 1441, 2854
BstHHI GCGC 1 cut(s) 1171
BstMAI GTCTC 4 cut(s) 687, 689, 944, 2798
BstMCI CGRYCG 1 cut(s) 2658
BstMWI GCNNNNNNNGC 6 cut(s) 1471, 1832, 1874, 2258, 2746, 2777
BstNI CCWGG 1 cut(s) 1477
BstNSI RCATGY 3 cut(s) 819, 1556, 2042
BstSCI CCNGG 2 cut(s) 1475, 2637
BstSFI CTRYAG 3 cut(s) 977, 1130, 2485
BstSLI GKGCMC 2 cut(s) 960, 2283
BstV1I GCAGC 7 cut(s) 1838, 1880, 2125, 2261, 2273, 2276, 2758
BstV2I GAAGAC 1 cut(s) 1497
BstX2I RGATCY 8 cut(s) 192, 250, 341, 352, 399, 581, 1363, 2437
BstYI RGATCY 8 cut(s) 192, 250, 341, 352, 399, 581, 1363, 2437
BstZ17I GTATAC 1 cut(s) 1485
BstZI CGGCCG 1 cut(s) 2655
Bsu15I ATCGAT 1 cut(s) 279
Bsu36I CCTNAGG 1 cut(s) 2550
BsuI GTATCC 1 cut(s) 2423
BsuRI GGCC 9 cut(s) 5, 151, 1008, 1633, 1721, 1928, 2548, 2657, 2713
BsuTUI ATCGAT 1 cut(s) 279
BtgI CCRYGG 2 cut(s) 117, 638
BtgZI GCGATG 1 cut(s) 2493
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 6 cut(s) 738, 869, 1248, 1330, 1441, 2854
BtsIMutI CAGTG 2 cut(s) 187, 245
Cac8I GCNNGC 3 cut(s) 1100, 2040, 2572
CaiI CAGNNNCTG 2 cut(s) 544, 1679
CciI TCATGA 2 cut(s) 859, 2383
CfoI GCGC 1 cut(s) 1171
Cfr13I GGNCC 3 cut(s) 307, 1006, 1843
ClaI ATCGAT 1 cut(s) 279
Csp6I GTAC 8 cut(s) 542, 591, 736, 755, 772, 867, 1050, 1889
CspCI CAANNNNNGTGG 2 cut(s) 832, 867
CviQI GTAC 8 cut(s) 542, 591, 736, 755, 772, 867, 1050, 1889
DraI TTTAAA 1 cut(s) 1747
DrdI GACNNNNNNGTC 1 cut(s) 1141
DseDI GACNNNNNNGTC 1 cut(s) 1141
EaeI YGGCCR 4 cut(s) 3, 1631, 1719, 2655
EagI CGGCCG 1 cut(s) 2655
Eam1104I CTCTTC 7 cut(s) 36, 1200, 1359, 1541, 2550, 2794, 2796
EarI CTCTTC 7 cut(s) 36, 1200, 1359, 1541, 2550, 2794, 2796
Ecl136II GAGCTC 1 cut(s) 2740
EclXI CGGCCG 1 cut(s) 2655
Eco130I CCWWGG 3 cut(s) 117, 585, 1146
Eco147I AGGCCT 2 cut(s) 2548, 2713
Eco24I GRGCYC 1 cut(s) 2742
Eco32I GATATC 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 307, 1843
Eco52I CGGCCG 1 cut(s) 2655
Eco53kI GAGCTC 1 cut(s) 2740
Eco57I CTGAAG 5 cut(s) 338, 929, 1509, 2261, 2804
Eco81I CCTNAGG 1 cut(s) 2550
Eco88I CYCGRG 1 cut(s) 2741
EcoICRI GAGCTC 1 cut(s) 2740
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 1006
EcoRII CCWGG 1 cut(s) 1475
EcoRV GATATC 1 cut(s) 135
EcoT14I CCWWGG 3 cut(s) 117, 585, 1146
EcoT22I ATGCAT 2 cut(s) 817, 2040
EcoT38I GRGCYC 1 cut(s) 2742
ErhI CCWWGG 3 cut(s) 117, 585, 1146
FaqI GGGAC 2 cut(s) 2191, 2434
FauNDI CATATG 1 cut(s) 811
FblI GTMKAC 2 cut(s) 1484, 2484
Fnu4HI GCNGC 7 cut(s) 1827, 1869, 2114, 2250, 2262, 2265, 2747
FokI GGATG 6 cut(s) 725, 856, 1235, 1337, 1448, 2861
FriOI GRGCYC 1 cut(s) 2742
Fsp4HI GCNGC 7 cut(s) 1827, 1869, 2114, 2250, 2262, 2265, 2747
FspBI CTAG 9 cut(s) 747, 1223, 1401, 1625, 1683, 1847, 2567, 2675, 2880
GlaI GCGC 1 cut(s) 1170
GluI GCNGC 7 cut(s) 1827, 1869, 2114, 2250, 2262, 2265, 2747
GsaI CCCAGC 1 cut(s) 2048
GsuI CTGGAG 2 cut(s) 684, 1025
HaeIII GGCC 9 cut(s) 5, 151, 1008, 1633, 1721, 1928, 2548, 2657, 2713
HapII CCGG 1 cut(s) 2638
HhaI GCGC 1 cut(s) 1171
Hin6I GCGC 1 cut(s) 1169
HinP1I GCGC 1 cut(s) 1169
HincII GTYRAC 2 cut(s) 966, 2406
HindII GTYRAC 2 cut(s) 966, 2406
HindIII AAGCTT 2 cut(s) 1619, 2572
HpaII CCGG 1 cut(s) 2638
HphI GGTGA 6 cut(s) 891, 1526, 1706, 1973, 2636, 2876
HpyCH4III ACNGT 5 cut(s) 296, 799, 866, 1107, 2011
HpyCH4IV ACGT 2 cut(s) 55, 2277
HpyF10VI GCNNNNNNNGC 6 cut(s) 1471, 1832, 1874, 2258, 2746, 2777
HpySE526I ACGT 2 cut(s) 55, 2277
HspAI GCGC 1 cut(s) 1169
KpnI GGTACC 1 cut(s) 1892
LguI GCTCTTC 1 cut(s) 1541
LmnI GCTCC 5 cut(s) 440, 761, 1823, 1865, 2509
Lsp1109I GCAGC 7 cut(s) 1838, 1880, 2125, 2261, 2273, 2276, 2758
LweI GCATC 6 cut(s) 1257, 1474, 1521, 1844, 1865, 1886
MaeI CTAG 9 cut(s) 747, 1223, 1401, 1625, 1683, 1847, 2567, 2675, 2880
MaeII ACGT 2 cut(s) 55, 2277
MaeIII GTNAC 5 cut(s) 220, 346, 1260, 1659, 2650
MfeI CAATTG 1 cut(s) 1689
MflI RGATCY 8 cut(s) 192, 250, 341, 352, 399, 581, 1363, 2437
MhlI GDGCHC 4 cut(s) 960, 2193, 2283, 2742
MlsI TGGCCA 3 cut(s) 5, 1633, 1721
MluNI TGGCCA 3 cut(s) 5, 1633, 1721
MlyI GAGTC 7 cut(s) 59, 691, 833, 1428, 1685, 1893, 2173
MmeI TCCRAC 1 cut(s) 18
Mox20I TGGCCA 3 cut(s) 5, 1633, 1721
Mph1103I ATGCAT 2 cut(s) 817, 2040
MroXI GAANNNNTTC 2 cut(s) 461, 1620
MscI TGGCCA 3 cut(s) 5, 1633, 1721
MslI CAYNNNNRTG 3 cut(s) 814, 2054, 2304
Msp20I TGGCCA 3 cut(s) 5, 1633, 1721
MspCI CTTAAG 1 cut(s) 1919
MspI CCGG 1 cut(s) 2638
MspR9I CCNGG 2 cut(s) 1477, 2639
MunI CAATTG 1 cut(s) 1689
MvaI CCWGG 1 cut(s) 1477
MwoI GCNNNNNNNGC 6 cut(s) 1471, 1832, 1874, 2258, 2746, 2777
NciI CCSGG 1 cut(s) 2639
NcoI CCATGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 811
NlaIV GGNNCC 7 cut(s) 194, 252, 672, 763, 1007, 1597, 1890
NmuCI GTSAC 2 cut(s) 346, 1260
NsiI ATGCAT 2 cut(s) 817, 2040
NspI RCATGY 3 cut(s) 819, 1556, 2042
NspV TTCGAA 1 cut(s) 918
PaeI GCATGC 1 cut(s) 2042
PaeR7I CTCGAG 1 cut(s) 2741
PagI TCATGA 2 cut(s) 859, 2383
PceI AGGCCT 2 cut(s) 2548, 2713
PciI ACATGT 1 cut(s) 1552
PciSI GCTCTTC 1 cut(s) 1541
PcsI WCGNNNNNNNCGW 1 cut(s) 2166
PdmI GAANNNNTTC 2 cut(s) 461, 1620
PfeI GAWTC 7 cut(s) 59, 71, 110, 547, 1588, 2332, 2396
PflFI GACNNNGTC 1 cut(s) 2182
PflMI CCANNNNNTGG 1 cut(s) 1059
PkrI GCNGC 7 cut(s) 1828, 1870, 2115, 2251, 2263, 2266, 2748
PleI GAGTC 7 cut(s) 59, 691, 833, 1427, 1684, 1893, 2173
PpsI GAGTC 7 cut(s) 59, 691, 833, 1427, 1684, 1893, 2173
Ppu21I YACGTR 1 cut(s) 2278
PscI ACATGT 1 cut(s) 1552
PshBI ATTAAT 1 cut(s) 2892
Psp124BI GAGCTC 1 cut(s) 2742
Psp6I CCWGG 1 cut(s) 1475
PspFI CCCAGC 1 cut(s) 2044
PspGI CCWGG 1 cut(s) 1475
PspN4I GGNNCC 7 cut(s) 194, 252, 672, 763, 1007, 1597, 1890
PspPI GGNCC 3 cut(s) 307, 1006, 1843
PspXI VCTCGAGB 1 cut(s) 2741
PstI CTGCAG 1 cut(s) 1134
PstNI CAGNNNCTG 2 cut(s) 544, 1679
PsuI RGATCY 8 cut(s) 192, 250, 341, 352, 399, 581, 1363, 2437
PsyI GACNNNGTC 1 cut(s) 2182
RsaI GTAC 8 cut(s) 543, 592, 737, 756, 773, 868, 1051, 1890
RsaNI GTAC 8 cut(s) 542, 591, 736, 755, 772, 867, 1050, 1889
RseI CAYNNNNRTG 3 cut(s) 814, 2054, 2304
SacI GAGCTC 1 cut(s) 2742
SapI GCTCTTC 1 cut(s) 1541
SatI GCNGC 7 cut(s) 1827, 1869, 2114, 2250, 2262, 2265, 2747
Sau96I GGNCC 3 cut(s) 307, 1006, 1843
SchI GAGTC 7 cut(s) 59, 691, 833, 1428, 1685, 1893, 2173
ScrFI CCNGG 2 cut(s) 1477, 2639
SduI GDGCHC 4 cut(s) 960, 2193, 2283, 2742
SfaNI GCATC 6 cut(s) 1257, 1474, 1521, 1844, 1865, 1886
SfcI CTRYAG 3 cut(s) 977, 1130, 2485
Sfr274I CTCGAG 1 cut(s) 2741
SfuI TTCGAA 1 cut(s) 918
SinI GGWCC 2 cut(s) 307, 1843
SlaI CTCGAG 1 cut(s) 2741
SmiMI CAYNNNNRTG 3 cut(s) 814, 2054, 2304
SmlI CTYRAG 4 cut(s) 85, 176, 1919, 2741
SmoI CTYRAG 4 cut(s) 85, 176, 1919, 2741
SphI GCATGC 1 cut(s) 2042
SseBI AGGCCT 2 cut(s) 2548, 2713
SsiI CCGC 2 cut(s) 1668, 2591
SspI AATATT 1 cut(s) 632
SspMI CTAG 9 cut(s) 747, 1223, 1401, 1625, 1683, 1847, 2567, 2675, 2880
SstI GAGCTC 1 cut(s) 2742
StuI AGGCCT 2 cut(s) 2548, 2713
StyD4I CCNGG 2 cut(s) 1475, 2637
StyI CCWWGG 3 cut(s) 117, 585, 1146
TaaI ACNGT 5 cut(s) 296, 799, 866, 1107, 2011
TaiI ACGT 2 cut(s) 58, 2280
TatI WGTACW 2 cut(s) 735, 754
TfiI GAWTC 7 cut(s) 59, 71, 110, 547, 1588, 2332, 2396
TscAI CASTG 2 cut(s) 194, 252
TseFI GTSAC 2 cut(s) 346, 1260
TseI GCWGC 7 cut(s) 1826, 1868, 2113, 2249, 2261, 2264, 2746
Tsp45I GTSAC 2 cut(s) 346, 1260
TspGWI ACGGA 3 cut(s) 1210, 2053, 2389
TspRI CASTG 2 cut(s) 194, 252
Tth111I GACNNNGTC 1 cut(s) 2182
Van91I CCANNNNNTGG 1 cut(s) 1059
Vha464I CTTAAG 1 cut(s) 1919
VneI GTGCAC 1 cut(s) 2279
VpaK11BI GGWCC 2 cut(s) 307, 1843
VspI ATTAAT 1 cut(s) 2892
XagI CCTNNNNNAGG 1 cut(s) 536
XceI RCATGY 3 cut(s) 819, 1556, 2042
XhoI CTCGAG 1 cut(s) 2741
XmiI GTMKAC 2 cut(s) 1484, 2484
XmnI GAANNNNTTC 2 cut(s) 461, 1620
XspI CTAG 9 cut(s) 747, 1223, 1401, 1625, 1683, 1847, 2567, 2675, 2880
Zsp2I ATGCAT 2 cut(s) 817, 2040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.