Rorug04G0098400

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
15496245 .. 15497621
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0098400.1

Sequence Viewer

Length: 1377 bp
ATGGCAGCAGCTTCCCAACCCGTTTTAATCTTTTTCCTTATTGCAGTCTCTGCATTCCATCAAACACTTTCGAAACCTAATGGTTTCAGCCTCAAGCTCATCCCCAGAGACTCCCCCGAGTCTCCTCTGTACCCAGGAAACCTCACTACACTTGAACGAATCGAAAGATTGATCGAGTTCTCCCGAGCCAGGGCTCGCTATGTGGAACTAACTTCGTCTCCAAATGCAACCATCTTGTACCCCGAAAACATACGTCTCACTTTGCTTCGTGATAACTTCTTCTACACGGTGCAGGTAGGTGTTGGAACTCCAGCCACAGGAGTGTTCCTGCTTCTAGACACTGGCGGTGGCCTAATCTGGACGCAGTGCCTACCTTGCTTAAATTGCTATCCGCAAAGAACTCCCATGTTCGATTCGAGTAAATCCAGCACTTATCAAAAGCTTCCTTGCAGCCACCGTTTTTGTCAAGGCGACCGTCCCCTCTACAAATGTGTCAATGATGAGTGTGTCTACAACATTAACTACGGTGGAGGGGCATCGACTGCAGGCATCGCTTCCATGGAAACATTCACATTTCCAGTCGACACCGCCACTACTACTCGAATTGGTCAAATTGTTTTTGGTTGCTCAAAGTATAGCCGAAACGTTCAATTTGCCAAAGGTGGTGTCATTTCAGGGGTCATGGGATTGAGCTTGTCTCCGGATTCATTGGCTTCACAGTTGTCTGATGTGACACAGAAACGTTTCTCATATTGCTTGGTACCTTTCACTCAAGCACAGCAGGCACCAAGTCTGGTAAGGTTTGGGGATGATATTCCCCACCCATCCTCAAATATTCAGACAACTCCTTTTGTACCAACACCCGGATCCCATTACTTTCAATTAAATTTGTTGGACATAAGTGTCGGATTTCGCAAGCTAGGGTTTCCCCCAGGTACCTTTACGGCGAGGCCAGATGGTTCAGGCGGCTGCATCGTTGACTCCGGTGCACTGATACCTCAGATCGATCAAAATGCCCAAGGCGGACGCAACGCCTACAGGCAGGTGATGTCTGCGTTTCAGAGCTATTATAATTCTTTCCAGCAGCTTACGAGGATCGGTAAAGTGCCTCAAGGGTTTGCATTGTGTTACAAGTATCCCCAAGATTTTAATCAATTTACCAGCATGACATATCATTTTGAGGATGCGGATTATATTGTGGATCCGAAATATGTGAATTTTTATGATCAGCAGGGAGGCTACTTTTGTGTTGCGTTGTTGCCTGGAAATGGGAAGAGTATTCTTGGAGCATGGCATCAGCAAAATATGAGGGTGACGTACGATGGCAACATTAACTCACTCCAATTCTCTGTTGAGACTTGTTCTTATGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

50.62

Weight (kDa)

7.88

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 95 - 270 2e-42 Xylanase inhibitor N-terminal
Asp PF00026 95 - 449 1.3e-10 Eukaryotic aspartyl protease
TAXi_C PF14541 295 - 450 8e-16 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1071
AarI CACCTGC 1 cut(s) 1033
AasI GACNNNNNNGTC 1 cut(s) 902
Acc36I ACCTGC 2 cut(s) 283, 1033
Acc65I GGTACC 2 cut(s) 760, 935
AccB1I GGYRCC 3 cut(s) 760, 784, 935
AccI GTMKAC 2 cut(s) 510, 582
AccIII TCCGGA 1 cut(s) 700
AciI CCGC 6 cut(s) 345, 392, 588, 966, 1023, 1187
AclI AACGTT 2 cut(s) 645, 742
AclWI GGATC 5 cut(s) 861, 874, 1103, 1196, 1209
AcsI RAATTY 2 cut(s) 886, 1216
AfaI GTAC 6 cut(s) 131, 239, 762, 855, 937, 1319
AfiI CCNNNNNNNGG 5 cut(s) 189, 190, 317, 863, 1268
AgsI TTSAA 3 cut(s) 155, 650, 881
AjnI CCWGG 4 cut(s) 133, 188, 931, 1261
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 7 cut(s) 11, 97, 442, 693, 919, 1065, 1087
AluI AGCT 7 cut(s) 11, 97, 442, 693, 919, 1065, 1087
Alw21I GWGCWC 1 cut(s) 991
Alw26I GTCTC 7 cut(s) 52, 102, 126, 222, 260, 702, 1349
Alw44I GTGCAC 1 cut(s) 987
AlwI GGATC 5 cut(s) 861, 874, 1103, 1196, 1209
AlwNI CAGNNNCTG 1 cut(s) 50
Ama87I CYCGRG 2 cut(s) 116, 183
Aor13HI TCCGGA 1 cut(s) 700
AoxI GGCC 2 cut(s) 349, 950
ApaLI GTGCAC 1 cut(s) 987
ApeKI GCWGC 5 cut(s) 5, 8, 450, 969, 1084
ApoI RAATTY 2 cut(s) 886, 1216
ArsI GACNNNNNNTTYG 2 cut(s) 651, 683
Asp700I GAANNNNTTC 1 cut(s) 743
Asp718I GGTACC 2 cut(s) 760, 935
AsuC2I CCSGG 1 cut(s) 864
AsuHPI GGTGA 2 cut(s) 1057, 1324
AsuII TTCGAA 1 cut(s) 71
AvaI CYCGRG 2 cut(s) 116, 183
BaeGI GKGCMC 1 cut(s) 991
BamHI GGATCC 2 cut(s) 866, 1201
BanI GGYRCC 3 cut(s) 760, 784, 935
BanII GRGCYC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 991
BbvI GCAGC 5 cut(s) 17, 20, 462, 956, 1096
BccI CCATC 5 cut(s) 66, 239, 832, 950, 1316
BceAI ACGGC 1 cut(s) 960
BcgI CGANNNNNNTGC 2 cut(s) 995, 1029
BciT130I CCWGG 4 cut(s) 135, 190, 933, 1263
BciVI GTATCC 1 cut(s) 1146
BclI TGATCA 1 cut(s) 1225
BcnI CCSGG 1 cut(s) 864
BcoDI GTCTC 7 cut(s) 52, 102, 126, 222, 260, 702, 1349
BfaI CTAG 2 cut(s) 335, 920
BfmI CTRYAG 2 cut(s) 543, 1036
BfuAI ACCTGC 2 cut(s) 283, 1033
BfuI GTATCC 1 cut(s) 1146
BisI GCNGC 6 cut(s) 6, 9, 451, 967, 970, 1085
BlsI GCNGC 6 cut(s) 7, 10, 452, 968, 971, 1086
Bme1390I CCNGG 5 cut(s) 135, 190, 864, 933, 1263
BmeT110I CYCGRG 2 cut(s) 116, 183
BmiI GGNNCC 5 cut(s) 762, 786, 868, 937, 1203
BmrFI CCNGG 5 cut(s) 135, 190, 864, 933, 1263
BmsI GCATC 5 cut(s) 545, 558, 981, 1174, 1303
BplI GAGNNNNNCTC 2 cut(s) 682, 714
BpmI CTGGAG 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 3 cut(s) 77, 756, 1095
BpuMI CCSGG 1 cut(s) 864
Bsa29I ATCGAT 1 cut(s) 1005
BsaBI GATNNNNATC 1 cut(s) 1149
BsaJI CCNNGG 5 cut(s) 133, 189, 558, 931, 1018
BsaWI WCCGGW 2 cut(s) 700, 983
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 5 cut(s) 189, 190, 317, 863, 1268
Bse1I ACTGG 2 cut(s) 346, 578
Bse8I GATNNNNATC 1 cut(s) 1149
BseAI TCCGGA 1 cut(s) 700
BseBI CCWGG 4 cut(s) 135, 190, 933, 1263
BseCI ATCGAT 1 cut(s) 1005
BseDI CCNNGG 5 cut(s) 133, 189, 558, 931, 1018
BseGI GGATG 4 cut(s) 99, 814, 824, 1189
BseJI GATNNNNATC 1 cut(s) 1149
BseLI CCNNNNNNNGG 5 cut(s) 189, 190, 317, 863, 1268
BseMII CTCAG 1 cut(s) 1013
BseNI ACTGG 2 cut(s) 346, 578
BseRI GAGGAG 1 cut(s) 114
BseSI GKGCMC 1 cut(s) 991
BseXI GCAGC 5 cut(s) 17, 20, 462, 956, 1096
BsgI GTGCAG 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 475
BshFI GGCC 2 cut(s) 351, 952
BshNI GGYRCC 3 cut(s) 760, 784, 935
BshVI ATCGAT 1 cut(s) 1005
BsiEI CGRYCG 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 991
BsiHKCI CYCGRG 2 cut(s) 116, 183
BsiSI CCGG 3 cut(s) 701, 864, 984
BsiWI CGTACG 1 cut(s) 1317
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 5 cut(s) 189, 190, 317, 863, 1268
BsmAI GTCTC 7 cut(s) 52, 102, 126, 222, 260, 702, 1349
BsmBI CGTCTC 2 cut(s) 222, 260
BsmFI GGGAC 1 cut(s) 462
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 2 cut(s) 351, 952
BsoBI CYCGRG 2 cut(s) 116, 183
Bsp119I TTCGAA 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 196, 991
Bsp13I TCCGGA 1 cut(s) 700
Bsp143I GATC 7 cut(s) 171, 866, 1002, 1006, 1095, 1201, 1225
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 6 cut(s) 345, 392, 588, 966, 1023, 1187
BspANI GGCC 2 cut(s) 351, 952
BspCNI CTCAG 1 cut(s) 1012
BspDI ATCGAT 1 cut(s) 1005
BspEI TCCGGA 1 cut(s) 700
BspLI GGNNCC 5 cut(s) 762, 786, 868, 937, 1203
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 2 cut(s) 283, 1033
BspPI GGATC 5 cut(s) 861, 874, 1103, 1196, 1209
BspT104I TTCGAA 1 cut(s) 71
BspT107I GGYRCC 3 cut(s) 760, 784, 935
BsrI ACTGG 2 cut(s) 346, 578
BssECI CCNNGG 5 cut(s) 133, 189, 558, 931, 1018
BssMI GATC 7 cut(s) 171, 866, 1002, 1006, 1095, 1201, 1225
BssT1I CCWWGG 2 cut(s) 558, 1018
Bst2UI CCWGG 4 cut(s) 135, 190, 933, 1263
Bst4CI ACNGT 5 cut(s) 289, 458, 476, 527, 720
Bst6I CTCTTC 1 cut(s) 1268
BstAPI GCANNNNNTGC 2 cut(s) 50, 542
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 4 cut(s) 196, 547, 783, 917
BstDEI CTNAG 1 cut(s) 999
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 4 cut(s) 99, 814, 824, 1189
BstKTI GATC 7 cut(s) 174, 869, 1005, 1009, 1098, 1204, 1228
BstMAI GTCTC 7 cut(s) 52, 102, 126, 222, 260, 702, 1349
BstMBI GATC 7 cut(s) 171, 866, 1002, 1006, 1095, 1201, 1225
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 6 cut(s) 50, 375, 384, 542, 551, 782
BstNI CCWGG 4 cut(s) 135, 190, 933, 1263
BstSCI CCNGG 5 cut(s) 133, 188, 862, 931, 1261
BstSFI CTRYAG 2 cut(s) 543, 1036
BstSLI GKGCMC 1 cut(s) 991
BstV1I GCAGC 5 cut(s) 17, 20, 462, 956, 1096
BstX2I RGATCY 2 cut(s) 866, 1201
BstYI RGATCY 2 cut(s) 866, 1201
Bsu15I ATCGAT 1 cut(s) 1005
BsuI GTATCC 1 cut(s) 1146
BsuRI GGCC 2 cut(s) 351, 952
BsuTUI ATCGAT 1 cut(s) 1005
BtgI CCRYGG 1 cut(s) 558
BtgZI GCGATG 1 cut(s) 535
BtsCI GGATG 4 cut(s) 99, 814, 824, 1189
BtsI GCAGTG 1 cut(s) 371
BtsIMutI CAGTG 3 cut(s) 339, 371, 989
BveI ACCTGC 2 cut(s) 283, 1033
Cac8I GCNNGC 4 cut(s) 196, 547, 783, 917
CaiI CAGNNNCTG 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 1005
CseI GACGC 2 cut(s) 370, 1035
Csp6I GTAC 6 cut(s) 130, 238, 761, 854, 936, 1318
CspCI CAANNNNNGTGG 2 cut(s) 443, 478
CviAII CATG 5 cut(s) 406, 559, 682, 1165, 1290
CviQI GTAC 6 cut(s) 130, 238, 761, 854, 936, 1318
DdeI CTNAG 1 cut(s) 999
DpnI GATC 7 cut(s) 173, 868, 1004, 1008, 1097, 1203, 1227
DpnII GATC 7 cut(s) 171, 866, 1002, 1006, 1095, 1201, 1225
DrdI GACNNNNNNGTC 1 cut(s) 902
DseDI GACNNNNNNGTC 1 cut(s) 902
Eam1104I CTCTTC 1 cut(s) 1268
EarI CTCTTC 1 cut(s) 1268
EciI GGCGGA 1 cut(s) 1038
Eco130I CCWWGG 2 cut(s) 558, 1018
Eco24I GRGCYC 1 cut(s) 196
Eco88I CYCGRG 2 cut(s) 116, 183
EcoRII CCWGG 4 cut(s) 133, 188, 931, 1261
EcoT14I CCWWGG 2 cut(s) 558, 1018
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 2 cut(s) 558, 1018
Esp3I CGTCTC 2 cut(s) 222, 260
FaeI CATG 5 cut(s) 409, 562, 685, 1168, 1293
FaqI GGGAC 1 cut(s) 462
FatI CATG 5 cut(s) 405, 558, 681, 1164, 1289
FbaI TGATCA 1 cut(s) 1225
FblI GTMKAC 2 cut(s) 510, 582
Fnu4HI GCNGC 6 cut(s) 6, 9, 451, 967, 970, 1085
FokI GGATG 4 cut(s) 86, 811, 821, 1196
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 6 cut(s) 6, 9, 451, 967, 970, 1085
FspBI CTAG 2 cut(s) 335, 920
GluI GCNGC 6 cut(s) 6, 9, 451, 967, 970, 1085
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 2 cut(s) 351, 952
HapII CCGG 3 cut(s) 701, 864, 984
HgaI GACGC 2 cut(s) 370, 1035
Hin1II CATG 5 cut(s) 409, 562, 685, 1168, 1293
HincII GTYRAC 2 cut(s) 583, 979
HindII GTYRAC 2 cut(s) 583, 979
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 6 cut(s) 110, 119, 159, 413, 704, 980
HpaII CCGG 3 cut(s) 701, 864, 984
HphI GGTGA 2 cut(s) 1057, 1324
Hpy166II GTNNAC 4 cut(s) 511, 583, 979, 989
Hpy188I TCNGA 6 cut(s) 727, 840, 908, 1002, 1062, 1206
Hpy188III TCNNGA 5 cut(s) 183, 269, 335, 358, 701
Hpy8I GTNNAC 4 cut(s) 511, 583, 979, 989
HpyCH4III ACNGT 5 cut(s) 289, 458, 476, 527, 720
HpyCH4IV ACGT 4 cut(s) 253, 645, 742, 1316
HpyCH4V TGCA 9 cut(s) 44, 53, 227, 292, 450, 545, 972, 989, 1121
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 375, 384, 542, 551, 782
HpyF3I CTNAG 1 cut(s) 999
HpySE526I ACGT 4 cut(s) 253, 645, 742, 1316
Hsp92II CATG 5 cut(s) 409, 562, 685, 1168, 1293
Kpn2I TCCGGA 1 cut(s) 700
KpnI GGTACC 2 cut(s) 764, 939
Ksp22I TGATCA 1 cut(s) 1225
Kzo9I GATC 7 cut(s) 171, 866, 1002, 1006, 1095, 1201, 1225
LmnI GCTCC 1 cut(s) 1286
Lsp1109I GCAGC 5 cut(s) 17, 20, 462, 956, 1096
LweI GCATC 5 cut(s) 545, 558, 981, 1174, 1303
MaeI CTAG 2 cut(s) 335, 920
MaeII ACGT 4 cut(s) 253, 645, 742, 1316
MaeIII GTNAC 3 cut(s) 730, 1127, 1312
MalI GATC 7 cut(s) 173, 868, 1004, 1008, 1097, 1203, 1227
MboI GATC 7 cut(s) 171, 866, 1002, 1006, 1095, 1201, 1225
MboII GAAGA 2 cut(s) 271, 1285
MflI RGATCY 2 cut(s) 866, 1201
MhlI GDGCHC 2 cut(s) 196, 991
MlyI GAGTC 3 cut(s) 104, 128, 974
MmeI TCCRAC 3 cut(s) 283, 873, 886
MroI TCCGGA 1 cut(s) 700
MroXI GAANNNNTTC 1 cut(s) 743
MseI TTAA 7 cut(s) 26, 380, 519, 884, 1149, 1332, 1375
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 3 cut(s) 701, 864, 984
MspR9I CCNGG 5 cut(s) 135, 190, 864, 933, 1263
Mva1269I GAATGC 1 cut(s) 53
MvaI CCWGG 4 cut(s) 135, 190, 933, 1263
MwoI GCNNNNNNNGC 6 cut(s) 50, 375, 384, 542, 551, 782
NciI CCSGG 1 cut(s) 864
NcoI CCATGG 1 cut(s) 558
NdeII GATC 7 cut(s) 171, 866, 1002, 1006, 1095, 1201, 1225
NlaIII CATG 5 cut(s) 409, 562, 685, 1168, 1293
NlaIV GGNNCC 5 cut(s) 762, 786, 868, 937, 1203
NmuCI GTSAC 2 cut(s) 730, 1312
NspV TTCGAA 1 cut(s) 71
OliI CACNNNNGTG 1 cut(s) 320
PaqCI CACCTGC 1 cut(s) 1033
PctI GAATGC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 3 cut(s) 159, 413, 704
Pfl23II CGTACG 1 cut(s) 1317
PkrI GCNGC 6 cut(s) 7, 10, 452, 968, 971, 1086
PleI GAGTC 3 cut(s) 104, 127, 974
PpsI GAGTC 3 cut(s) 104, 127, 974
PsiI TTATAA 1 cut(s) 1071
Psp1406I AACGTT 2 cut(s) 645, 742
Psp6I CCWGG 4 cut(s) 133, 188, 931, 1261
PspGI CCWGG 4 cut(s) 133, 188, 931, 1261
PspLI CGTACG 1 cut(s) 1317
PspN4I GGNNCC 5 cut(s) 762, 786, 868, 937, 1203
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 2 cut(s) 866, 1201
RsaI GTAC 6 cut(s) 131, 239, 762, 855, 937, 1319
RsaNI GTAC 6 cut(s) 130, 238, 761, 854, 936, 1318
RseI CAYNNNNRTG 1 cut(s) 320
SalI GTCGAC 1 cut(s) 581
SaqAI TTAA 7 cut(s) 26, 380, 519, 884, 1149, 1332, 1375
SatI GCNGC 6 cut(s) 6, 9, 451, 967, 970, 1085
Sau3AI GATC 7 cut(s) 171, 866, 1002, 1006, 1095, 1201, 1225
SchI GAGTC 3 cut(s) 104, 128, 974
ScrFI CCNGG 5 cut(s) 135, 190, 864, 933, 1263
SduI GDGCHC 2 cut(s) 196, 991
SfaNI GCATC 5 cut(s) 545, 558, 981, 1174, 1303
SfcI CTRYAG 2 cut(s) 543, 1036
SfuI TTCGAA 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 3 cut(s) 92, 771, 1110
SmoI CTYRAG 3 cut(s) 92, 771, 1110
SsiI CCGC 6 cut(s) 345, 392, 588, 966, 1023, 1187
SspI AATATT 1 cut(s) 835
SspMI CTAG 2 cut(s) 335, 920
StyD4I CCNGG 5 cut(s) 133, 188, 862, 931, 1261
StyI CCWWGG 2 cut(s) 558, 1018
TaaI ACNGT 5 cut(s) 289, 458, 476, 527, 720
TaiI ACGT 4 cut(s) 256, 648, 745, 1319
TaqI TCGA 9 cut(s) 71, 162, 174, 411, 416, 539, 582, 601, 1005
TauI GCSGC 1 cut(s) 969
TfiI GAWTC 3 cut(s) 159, 413, 704
Tru1I TTAA 7 cut(s) 26, 380, 519, 884, 1149, 1332, 1375
Tru9I TTAA 7 cut(s) 26, 380, 519, 884, 1149, 1332, 1375
TscAI CASTG 3 cut(s) 346, 371, 996
TseFI GTSAC 2 cut(s) 730, 1312
TseI GCWGC 5 cut(s) 5, 8, 450, 969, 1084
Tsp45I GTSAC 2 cut(s) 730, 1312
TspDTI ATGAA 1 cut(s) 696
TspRI CASTG 3 cut(s) 346, 371, 996
VneI GTGCAC 1 cut(s) 987
XapI RAATTY 2 cut(s) 886, 1216
XbaI TCTAGA 1 cut(s) 334
XmiI GTMKAC 2 cut(s) 510, 582
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 2 cut(s) 335, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.