Rroxscaffold_4G00278680

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
1569630 .. 1572954
3325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278680.1

Sequence Viewer

Length: 1866 bp
ATGTGGAACAACATATTTGTAGCATCTTGTGTGTTTGCTGTCTCCTTTGATCCTTTGTTCTTCTACACTCCAGTCATAAACGGGAAGAAGAAGTGTGTATATTTTGACACAAGGTTGAAGGCCATAGCCCTTGTCTTGAGGTTACTCACAGATCTCTTCTACATTGGGGACATTATTATGCGAATTTTGATTAGTATACCTCAAACCAAGTCATCCAAGGCTTCTGATGAGGTGACGAAAACACAAGCCGAAGCTCATAATTCCAAAGGGAAAATATCAGTTGAGGATGTTTTCAAAATAGCTAAAGGGGCTTGGGCGAAAGCTAATAGATCATACATCCTGATTGACATTTTAGCTATTCTTCCCATACCCCAGGTGGGAATGTTCGTTTTCTTTTCGAAGATGAAGGGCCCGGGATGTTCGATAGAATGGAGGCTTTTCGACATTCTTGTTTTGTTCCAATTTGTCCCACGCGTTCTTCCCGTTTACTTATTGTGTAGAGAACGTCAGACAACTCTTAATAAAGCAAGCATGTGGACTAAAGGTGTTTTCAATTTCTTTCTATACATCCTTGCAAGTCATGTAATCGGAGCTCTTTGGTACTTTTTTGCCATCCAACGAGAGATGGATTGTTGGCATTATGTTTGCCAACGTCACAAGGGATGTCAACCTAGTACCTTTAGTTGTAGTGAACGACGAAATGGATTGAGAACTATCCAATCCGACGACATTCTTCGATGGTTAGACAAAGAATGTCGTCCGATAAACCTACAGGACGAAAGGAAAGGAGAGCTCTTTAAATTTGGTATATTTGCTGATGCGCTTGACTCCGACCTAGTGCAGTCGACTGATTTTCCTCAAAAATTCTTGAACTGTTTCTGGTGGGGGCTGCGAAATCTGAGCTCTCTTGGTCAAAACCTCCGTACAAGTACCTATGCATGGGAAAACCTCTTTGCCGTGTTTATTTCCATTGTAGGCATGCTACTGTTTATATATCTCATCGGAAGTCTGCAGACATATTTGCAGTTTGCAACTGCAAGATCAGAGAAGATTAGACGGAAGATGAAAACGAAAAATTTAGAGGTTGATTTGTGGTTATCTAGAAAGGGACTGCCTAGCAATTTGAAGGTAGTGATAATGCAATTCATACAACAAAAACTTGAACAGAACAATGATGTTCAAGTTGAGAACATCCTGTCTGTTCTTCCTTCAGCACATGGTAAATATATCATGCGCTATCTTCGGTTGGCTACACTCAAGAAAGTGCCAATGCTTCAAACTATGGGGGTAAGACTGCTGAAAGCAATCTGTGAGCACCTCGAGCCGGTGGACTATACTGAGGACAGTTGCGTTATTCGAGAGGGAGAGCCACTCCATAAGATGATTTTCATCACACATGGCACAGTACATACCTACAGGACCAATGGTAAAGGTGGAAAAATTGGTTCCAGGTTTCTTGAGAAAGGCAACTTCTATGGATCAGAAGAGCTTCTCAATTGGGTATCAAAGTTTAGCTCTTCCAACGACTTACCAATCTCGACCAGAATGGTTAAGCCTGTCACGAAAGTCGAAGTCTTTGAACTGAGCGCGGACGACTTGAAGAGTGTAGCCATCAAGTACTGGTGGAATTTCACCAAGAACAAGGATCCAAAGGATTTCGACCTGTCTCTGTTAGAGGAGTTTGCAGTATCTTCCATAGAAAAAGAAATCCGTCGCCGCAGCCAACCGAAAAAGAAGCCTACAGTAAGTTCTCTCCTTAAGTTGGCTACTAATCAGGGTAGTGCTAGCCAGAAGTTCCAAAAGGTCATCAGTAGGGTCATGAGGGATCAGCTACCTGCACCAGTTTGTGCTCTAGGTGGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

621

Amino Acids

71.42

Weight (kDa)

9.55

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 5 - 348 4e-09 Ion transport protein
cNMP_binding PF00027 443 - 536 4.1e-07 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1843, 1851
AccI GTMKAC 2 cut(s) 196, 845
AccII CGCG 2 cut(s) 474, 1589
AciI CCGC 2 cut(s) 1589, 1717
AclWI GGATC 5 cut(s) 44, 1486, 1640, 1653, 1833
AcsI RAATTY 5 cut(s) 183, 800, 863, 1075, 1627
AcuI CTGAAG 1 cut(s) 1194
AfaI GTAC 6 cut(s) 602, 676, 925, 931, 1407, 1619
AfiI CCNNNNNNNGG 4 cut(s) 377, 939, 1324, 1762
AflII CTTAAG 1 cut(s) 1757
AflIII ACRYGT 1 cut(s) 472
AjnI CCWGG 2 cut(s) 372, 1448
Alw21I GWGCWC 5 cut(s) 595, 795, 905, 1317, 1852
Alw26I GTCTC 2 cut(s) 46, 1671
AlwI GGATC 5 cut(s) 44, 1486, 1640, 1653, 1833
Ama87I CYCGRG 2 cut(s) 412, 1319
AoxI GGCC 2 cut(s) 120, 409
ApaI GGGCCC 1 cut(s) 413
ApeKI GCWGC 2 cut(s) 889, 1719
ApoI RAATTY 5 cut(s) 183, 800, 863, 1075, 1627
Asp700I GAANNNNTTC 2 cut(s) 875, 1488
AspLEI GCGC 3 cut(s) 823, 1236, 1589
AspS9I GGNCC 3 cut(s) 409, 410, 1419
AsuC2I CCSGG 2 cut(s) 413, 414
AsuHPI GGTGA 2 cut(s) 244, 1624
AsuII TTCGAA 1 cut(s) 398
AsuNHI GCTAGC 1 cut(s) 1784
AvaI CYCGRG 2 cut(s) 412, 1319
AvaII GGWCC 1 cut(s) 1419
BaeGI GKGCMC 1 cut(s) 413
BamHI GGATCC 1 cut(s) 1645
BanII GRGCYC 4 cut(s) 413, 595, 795, 905
Bbv12I GWGCWC 5 cut(s) 595, 795, 905, 1317, 1852
BbvI GCAGC 2 cut(s) 876, 1731
BccI CCATC 4 cut(s) 619, 620, 732, 1619
BceAI ACGGC 1 cut(s) 941
BciT130I CCWGG 2 cut(s) 374, 1450
BcnI CCSGG 2 cut(s) 413, 414
BcoDI GTCTC 2 cut(s) 46, 1671
BfaI CTAG 6 cut(s) 672, 836, 1101, 1116, 1785, 1853
BfmI CTRYAG 4 cut(s) 770, 1010, 1414, 1740
BfrI CTTAAG 1 cut(s) 1757
BfuAI ACCTGC 2 cut(s) 1843, 1851
BglII AGATCT 1 cut(s) 151
BisI GCNGC 3 cut(s) 890, 1717, 1720
BlsI GCNGC 3 cut(s) 891, 1718, 1721
BmcAI AGTACT 1 cut(s) 1619
Bme1390I CCNGG 4 cut(s) 374, 413, 414, 1450
Bme18I GGWCC 1 cut(s) 1419
BmeT110I CYCGRG 2 cut(s) 412, 1319
BmgT120I GGNCC 3 cut(s) 409, 410, 1419
BmiI GGNNCC 3 cut(s) 411, 1447, 1647
BmrFI CCNGG 4 cut(s) 374, 413, 414, 1450
BmsI GCATC 2 cut(s) 32, 808
BmtI GCTAGC 1 cut(s) 1788
BplI GAGNNNNNCTC 2 cut(s) 1356, 1388
BpmI CTGGAG 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 398
BpuEI CTTGAG 3 cut(s) 157, 1241, 1478
BpuMI CCSGG 2 cut(s) 413, 414
BsaBI GATNNNNATC 1 cut(s) 1388
BsaJI CCNNGG 3 cut(s) 216, 372, 412
Bsc4I CCNNNNNNNGG 4 cut(s) 377, 939, 1324, 1762
Bse118I RCCGGY 1 cut(s) 1324
Bse1I ACTGG 3 cut(s) 71, 1625, 1841
Bse8I GATNNNNATC 1 cut(s) 1388
BseBI CCWGG 2 cut(s) 374, 1450
BseDI CCNNGG 3 cut(s) 216, 372, 412
BseGI GGATG 8 cut(s) 212, 292, 336, 422, 567, 612, 668, 1191
BseJI GATNNNNATC 1 cut(s) 1388
BseLI CCNNNNNNNGG 4 cut(s) 377, 939, 1324, 1762
BseMII CTCAG 3 cut(s) 890, 1329, 1574
BseNI ACTGG 3 cut(s) 71, 1625, 1841
BseRI GAGGAG 1 cut(s) 1691
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 2 cut(s) 876, 1731
BsgI GTGCAG 2 cut(s) 860, 1821
Bsh1236I CGCG 2 cut(s) 474, 1589
BshFI GGCC 2 cut(s) 122, 411
BsiHKAI GWGCWC 5 cut(s) 595, 795, 905, 1317, 1852
BsiHKCI CYCGRG 2 cut(s) 412, 1319
BsiSI CCGG 2 cut(s) 413, 1325
BslFI GGGAC 3 cut(s) 182, 452, 1122
BslI CCNNNNNNNGG 4 cut(s) 377, 939, 1324, 1762
BsmAI GTCTC 2 cut(s) 46, 1671
BsmFI GGGAC 3 cut(s) 182, 452, 1122
BsnI GGCC 2 cut(s) 122, 411
BsoBI CYCGRG 2 cut(s) 412, 1319
Bsp119I TTCGAA 1 cut(s) 398
Bsp120I GGGCCC 1 cut(s) 409
Bsp1286I GDGCHC 6 cut(s) 413, 595, 795, 905, 1317, 1852
Bsp143I GATC 7 cut(s) 49, 151, 329, 1040, 1478, 1645, 1825
BspACI CCGC 2 cut(s) 1589, 1717
BspANI GGCC 2 cut(s) 122, 411
BspCNI CTCAG 3 cut(s) 891, 1330, 1575
BspFNI CGCG 2 cut(s) 474, 1589
BspHI TCATGA 1 cut(s) 1818
BspLI GGNNCC 3 cut(s) 411, 1447, 1647
BspMAI CTGCAG 1 cut(s) 1014
BspMI ACCTGC 2 cut(s) 1843, 1851
BspOI GCTAGC 1 cut(s) 1788
BspPI GGATC 5 cut(s) 44, 1486, 1640, 1653, 1833
BspQI GCTCTTC 2 cut(s) 1479, 1522
BspT104I TTCGAA 1 cut(s) 398
BspTI CTTAAG 1 cut(s) 1757
BsrFI RCCGGY 1 cut(s) 1324
BsrI ACTGG 3 cut(s) 71, 1625, 1841
BssAI RCCGGY 1 cut(s) 1324
BssECI CCNNGG 3 cut(s) 216, 372, 412
BssMI GATC 7 cut(s) 49, 151, 329, 1040, 1478, 1645, 1825
BssNAI GTATAC 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 216
Bst1107I GTATAC 1 cut(s) 197
Bst2UI CCWGG 2 cut(s) 374, 1450
Bst4CI ACNGT 5 cut(s) 875, 987, 1346, 1405, 1744
Bst6I CTCTTC 4 cut(s) 161, 1479, 1522, 1595
BstAFI CTTAAG 1 cut(s) 1757
BstBI TTCGAA 1 cut(s) 398
BstC8I GCNNGC 3 cut(s) 529, 980, 1786
BstDEI CTNAG 3 cut(s) 899, 1338, 1583
BstF5I GGATG 8 cut(s) 212, 292, 336, 422, 567, 612, 668, 1191
BstFNI CGCG 2 cut(s) 474, 1589
BstHHI GCGC 3 cut(s) 823, 1236, 1589
BstKTI GATC 7 cut(s) 52, 154, 332, 1043, 1481, 1648, 1828
BstMAI GTCTC 2 cut(s) 46, 1671
BstMBI GATC 7 cut(s) 49, 151, 329, 1040, 1478, 1645, 1825
BstMWI GCNNNNNNNGC 2 cut(s) 308, 1321
BstNI CCWGG 2 cut(s) 374, 1450
BstNSI RCATGY 2 cut(s) 535, 982
BstSCI CCNGG 4 cut(s) 372, 411, 412, 1448
BstSFI CTRYAG 4 cut(s) 770, 1010, 1414, 1740
BstSLI GKGCMC 1 cut(s) 413
BstUI CGCG 2 cut(s) 474, 1589
BstV1I GCAGC 2 cut(s) 876, 1731
BstX2I RGATCY 2 cut(s) 151, 1645
BstYI RGATCY 2 cut(s) 151, 1645
BstZ17I GTATAC 1 cut(s) 197
BsuRI GGCC 2 cut(s) 122, 411
BtsCI GGATG 8 cut(s) 212, 292, 336, 422, 567, 612, 668, 1191
BveI ACCTGC 2 cut(s) 1843, 1851
Cac8I GCNNGC 3 cut(s) 529, 980, 1786
CciI TCATGA 1 cut(s) 1818
CfoI GCGC 3 cut(s) 823, 1236, 1589
Cfr10I RCCGGY 1 cut(s) 1324
Cfr13I GGNCC 3 cut(s) 409, 410, 1419
Cfr9I CCCGGG 1 cut(s) 412
Csp6I GTAC 6 cut(s) 601, 675, 924, 930, 1406, 1618
CviAII CATG 8 cut(s) 532, 581, 939, 979, 1217, 1231, 1397, 1819
CviQI GTAC 6 cut(s) 601, 675, 924, 930, 1406, 1618
DdeI CTNAG 3 cut(s) 899, 1338, 1583
DpnI GATC 7 cut(s) 51, 153, 331, 1042, 1480, 1647, 1827
DpnII GATC 7 cut(s) 49, 151, 329, 1040, 1478, 1645, 1825
DraI TTTAAA 1 cut(s) 799
Eam1104I CTCTTC 4 cut(s) 161, 1479, 1522, 1595
EarI CTCTTC 4 cut(s) 161, 1479, 1522, 1595
Ecl136II GAGCTC 3 cut(s) 593, 793, 903
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 4 cut(s) 413, 595, 795, 905
Eco47I GGWCC 1 cut(s) 1419
Eco53kI GAGCTC 3 cut(s) 593, 793, 903
Eco57I CTGAAG 1 cut(s) 1194
Eco88I CYCGRG 2 cut(s) 412, 1319
EcoICRI GAGCTC 3 cut(s) 593, 793, 903
EcoO109I RGGNCCY 1 cut(s) 409
EcoRII CCWGG 2 cut(s) 372, 1448
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 940
EcoT38I GRGCYC 4 cut(s) 413, 595, 795, 905
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 8 cut(s) 535, 584, 942, 982, 1220, 1234, 1400, 1822
FaqI GGGAC 3 cut(s) 182, 452, 1122
FatI CATG 8 cut(s) 531, 580, 938, 978, 1216, 1230, 1396, 1818
FblI GTMKAC 2 cut(s) 196, 845
Fnu4HI GCNGC 3 cut(s) 890, 1717, 1720
FokI GGATG 8 cut(s) 199, 299, 323, 429, 554, 599, 675, 1178
FriOI GRGCYC 4 cut(s) 413, 595, 795, 905
Fsp4HI GCNGC 3 cut(s) 890, 1717, 1720
FspBI CTAG 6 cut(s) 672, 836, 1101, 1116, 1785, 1853
GlaI GCGC 3 cut(s) 822, 1235, 1588
GluI GCNGC 3 cut(s) 890, 1717, 1720
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 2 cut(s) 122, 411
HapII CCGG 2 cut(s) 413, 1325
HhaI GCGC 3 cut(s) 823, 1236, 1589
Hin1II CATG 8 cut(s) 535, 584, 942, 982, 1220, 1234, 1400, 1822
Hin6I GCGC 3 cut(s) 821, 1234, 1587
HinP1I GCGC 3 cut(s) 821, 1234, 1587
HincII GTYRAC 2 cut(s) 668, 846
HindII GTYRAC 2 cut(s) 668, 846
HinfI GANTC 1 cut(s) 827
HpaII CCGG 2 cut(s) 413, 1325
HphI GGTGA 2 cut(s) 244, 1624
Hpy166II GTNNAC 7 cut(s) 197, 487, 537, 668, 692, 846, 1330
Hpy8I GTNNAC 7 cut(s) 197, 487, 537, 668, 692, 846, 1330
Hpy99I CGWCG 3 cut(s) 699, 728, 1716
HpyAV CCTTC 4 cut(s) 112, 400, 1120, 1218
HpyCH4III ACNGT 5 cut(s) 875, 987, 1346, 1405, 1744
HpyCH4IV ACGT 2 cut(s) 505, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 1321
HpyF3I CTNAG 3 cut(s) 899, 1338, 1583
HpySE526I ACGT 2 cut(s) 505, 652
Hsp92II CATG 8 cut(s) 535, 584, 942, 982, 1220, 1234, 1400, 1822
HspAI GCGC 3 cut(s) 821, 1234, 1587
Kzo9I GATC 7 cut(s) 49, 151, 329, 1040, 1478, 1645, 1825
LguI GCTCTTC 2 cut(s) 1479, 1522
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 2 cut(s) 876, 1731
LweI GCATC 2 cut(s) 32, 808
MaeI CTAG 6 cut(s) 672, 836, 1101, 1116, 1785, 1853
MaeII ACGT 2 cut(s) 505, 652
MaeIII GTNAC 4 cut(s) 141, 232, 653, 1558
MalI GATC 7 cut(s) 51, 153, 331, 1042, 1480, 1647, 1827
MboI GATC 7 cut(s) 49, 151, 329, 1040, 1478, 1645, 1825
MfeI CAATTG 1 cut(s) 1495
MflI RGATCY 2 cut(s) 151, 1645
MhlI GDGCHC 6 cut(s) 413, 595, 795, 905, 1317, 1852
MluI ACGCGT 1 cut(s) 472
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 4 cut(s) 640, 747, 855, 1545
Mph1103I ATGCAT 1 cut(s) 940
MroXI GAANNNNTTC 2 cut(s) 875, 1488
MseI TTAA 4 cut(s) 519, 798, 1551, 1758
MslI CAYNNNNRTG 1 cut(s) 176
MspCI CTTAAG 1 cut(s) 1757
MspI CCGG 2 cut(s) 413, 1325
MspR9I CCNGG 4 cut(s) 374, 413, 414, 1450
MunI CAATTG 1 cut(s) 1495
MvaI CCWGG 2 cut(s) 374, 1450
MvnI CGCG 2 cut(s) 474, 1589
MwoI GCNNNNNNNGC 2 cut(s) 308, 1321
NciI CCSGG 2 cut(s) 413, 414
NdeII GATC 7 cut(s) 49, 151, 329, 1040, 1478, 1645, 1825
NheI GCTAGC 1 cut(s) 1784
NlaIII CATG 8 cut(s) 535, 584, 942, 982, 1220, 1234, 1400, 1822
NlaIV GGNNCC 3 cut(s) 411, 1447, 1647
NmuCI GTSAC 3 cut(s) 232, 653, 1558
NsiI ATGCAT 1 cut(s) 940
NspI RCATGY 2 cut(s) 535, 982
NspV TTCGAA 1 cut(s) 398
PaeI GCATGC 1 cut(s) 982
PaeR7I CTCGAG 1 cut(s) 1319
PagI TCATGA 1 cut(s) 1818
PciSI GCTCTTC 2 cut(s) 1479, 1522
PdmI GAANNNNTTC 2 cut(s) 875, 1488
PkrI GCNGC 3 cut(s) 891, 1718, 1721
PleI GAGTC 1 cut(s) 821
PpsI GAGTC 1 cut(s) 821
Psp124BI GAGCTC 3 cut(s) 595, 795, 905
Psp6I CCWGG 2 cut(s) 372, 1448
PspGI CCWGG 2 cut(s) 372, 1448
PspN4I GGNNCC 3 cut(s) 411, 1447, 1647
PspOMI GGGCCC 1 cut(s) 409
PspPI GGNCC 3 cut(s) 409, 410, 1419
PspXI VCTCGAGB 1 cut(s) 1319
PstI CTGCAG 1 cut(s) 1014
PsuI RGATCY 2 cut(s) 151, 1645
RsaI GTAC 6 cut(s) 602, 676, 925, 931, 1407, 1619
RsaNI GTAC 6 cut(s) 601, 675, 924, 930, 1406, 1618
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 3 cut(s) 595, 795, 905
SalI GTCGAC 1 cut(s) 844
SapI GCTCTTC 2 cut(s) 1479, 1522
SaqAI TTAA 4 cut(s) 519, 798, 1551, 1758
SatI GCNGC 3 cut(s) 890, 1717, 1720
Sau3AI GATC 7 cut(s) 49, 151, 329, 1040, 1478, 1645, 1825
Sau96I GGNCC 3 cut(s) 409, 410, 1419
ScaI AGTACT 1 cut(s) 1619
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 4 cut(s) 374, 413, 414, 1450
SduI GDGCHC 6 cut(s) 413, 595, 795, 905, 1317, 1852
SfaNI GCATC 2 cut(s) 32, 808
SfcI CTRYAG 4 cut(s) 770, 1010, 1414, 1740
Sfr274I CTCGAG 1 cut(s) 1319
SfuI TTCGAA 1 cut(s) 398
SinI GGWCC 1 cut(s) 1419
SlaI CTCGAG 1 cut(s) 1319
SmaI CCCGGG 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 5 cut(s) 136, 1256, 1319, 1457, 1757
SmoI CTYRAG 5 cut(s) 136, 1256, 1319, 1457, 1757
SphI GCATGC 1 cut(s) 982
SsiI CCGC 2 cut(s) 1589, 1717
SspMI CTAG 6 cut(s) 672, 836, 1101, 1116, 1785, 1853
SstI GAGCTC 3 cut(s) 595, 795, 905
StyD4I CCNGG 4 cut(s) 372, 411, 412, 1448
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 5 cut(s) 875, 987, 1346, 1405, 1744
TaiI ACGT 2 cut(s) 508, 655
TatI WGTACW 2 cut(s) 1405, 1617
TauI GCSGC 1 cut(s) 1719
Tru1I TTAA 4 cut(s) 519, 798, 1551, 1758
Tru9I TTAA 4 cut(s) 519, 798, 1551, 1758
TseFI GTSAC 3 cut(s) 232, 653, 1558
TseI GCWGC 2 cut(s) 889, 1719
Tsp45I GTSAC 3 cut(s) 232, 653, 1558
TspDTI ATGAA 4 cut(s) 419, 1079, 1135, 1378
TspGWI ACGGA 3 cut(s) 911, 1072, 1700
TspMI CCCGGG 1 cut(s) 412
Vha464I CTTAAG 1 cut(s) 1757
VpaK11BI GGWCC 1 cut(s) 1419
XapI RAATTY 5 cut(s) 183, 800, 863, 1075, 1627
XbaI TCTAGA 1 cut(s) 1100
XceI RCATGY 2 cut(s) 535, 982
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
XhoI CTCGAG 1 cut(s) 1319
XmaI CCCGGG 1 cut(s) 412
XmiI GTMKAC 2 cut(s) 196, 845
XmnI GAANNNNTTC 2 cut(s) 875, 1488
XspI CTAG 6 cut(s) 672, 836, 1101, 1116, 1785, 1853
ZrmI AGTACT 1 cut(s) 1619
Zsp2I ATGCAT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.