Rw2G020550

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
28025560 .. 28029603
4044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020550.1

Sequence Viewer

Length: 1821 bp
ATGGGGGACTTCCGCAACAATGACTCGTTTGTGATAGATATGCCAGAATACTGGGGATTAGTGGCTGGTGAATCTACGGTGAATGGTAAATCAATGAAAAAATTGCCTATAACAAAGGACATTCTTGATCCGGAGGGGACATTCTTTCCAATGTGGAATAAAATATTTGTGATAGCGTGTGTAGTTGCTGTCTTATCGGATCCTTTGTTTTTGTACATTCCTATCCTCAAAGATGATATGAAGTGCCTGGGATTTGATGCAAAGTTGAAGAAAGTAACTCTTGTCTCAAGATCAGTAACAGATCTGTTTTATGTCGTGGACATTATTTTGCAAATTTGTAGCAGACTTACTGCCAAGACATTTGCAGCCTCGTGGATATCGATAACTGAAGAGGCATTTCCTTTGAAAGGAGAGAAATCAGTTAAGGATGCTCTGGCATTAGCCAAAAGGATTTCGCTCTCATATATTCTAATTGACATTTTAGCTGTTCTTCCCTGTCCGCAGGTGGTGATTCTCATGTTCTTTTCAAAAGTGAGGGCCTCAAAACCTTCGGTTACAAGGATATTCCTGAACTCTCTTGTTCTGTTCCAATATGTGCCACGAGTTCTCCGCATCTACCTTTCAGGCAAGGCTCCTAGCATAGAGAGCGGAATAGGACTATGGATTAAAGGCGTGTTCAATTTTTTTCCCTTCTTCCTTGCTGGTCATGTACTTGGAGCAATTTGGTACTTTTTTGCTATTCAACGAGAGACAGCTTGCTGGGTATATGCTTGTCAAGGTGAAGGCGGATGTGAGCCCAGTACTTTTAATTGTGACAACAATGTGTTCAGAAATATCACACGCCTCAATTATCTTTGCCCCAAAAACCCACCAAACACTGCACTGTTCGATTTTGGCATATTTCTTGATGCTCTTCAGTCTGGTATGTTGGAGTCAACAGATTTTCCACAAAAGTTGCTGCAATGTTTCTGGTGGGGCCTGCGAAATTTGAGTTCTTTTGGTCAAAACCTCCAGCCCAGTCCCTATGCACTGGAAAACCTCTTTACGGTTTTAATTTCTATAAGTGGCATGCTACTATTTTTGATTTACCTCAATGCAAATTTGCAGACATACGTTGAGTTGGAAGCAAAAAGATCAGACAATCTTCGATTCAGACGGAAGATGCAAATCATAAATCCAGAAATTGATTTGTGGTTACATAAAAATGGTCTTCCTAAAGATTTGAAGATGGGAATAATGGATAATGTGCAACAAAAACTTGAAGAAAACAAAGATGTTCATGTCGAAAATATCCTCTCTATTCTTCCCTTGAAACATAAAAGACATATTATGCGACTTCTCCGCTTGGCTTCGCTAAGGAAAGTATCAATGCTTAAGCATATGGATGAACAAGTGTTGAATGCAATCTGTGAGCATCTTAAACCTGTGATATATGCCGAGGACAGCATTGCATGGACCTATGCAACTAATATTGGTGGTGTAAGTAGTAGTTCGTCAAACATTGATTGCCTTGAGAAAGGTGATTTTTATGGAGAAGAACTTCTTAATTGGGCATTTAATTTTGCCTCCTTTTCGGAGTTACCTATCTCGAGCAGAACTGTTAAGTCCCAAAGAAAACTTGAAGCATTTGCTATCAGGGCTAACGACTTGCATAGTGTTGTCTCTAAATTCTGGTGGCATTTTAGCATGGAGCTTGAACCTGATAATCAACCAAGGAGGCGAGAACATTTGGCAACTTCTTGTTTACAGAAAACGTGGCGACGGTATCATGCAGGGCCTAGGGGTGTTGGAACGGGTGGAAGAAATTTTATAATGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

606

Amino Acids

69.12

Weight (kDa)

8.92

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1811
AarI CACCTGC 1 cut(s) 493
Acc36I ACCTGC 1 cut(s) 493
AccBSI CCGCTC 1 cut(s) 648
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 6 cut(s) 13, 500, 610, 648, 786, 1342
AclWI GGATC 3 cut(s) 122, 194, 207
AcsI RAATTY 5 cut(s) 333, 985, 1099, 1667, 1804
AcuI CTGAAG 2 cut(s) 408, 899
AfaI GTAC 4 cut(s) 215, 711, 728, 802
AfiI CCNNNNNNNGG 2 cut(s) 407, 1045
AflII CTTAAG 1 cut(s) 1373
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 485, 755, 1693
AluI AGCT 3 cut(s) 485, 755, 1693
Alw26I GTCTC 3 cut(s) 289, 743, 1666
AlwI GGATC 3 cut(s) 122, 194, 207
Ama87I CYCGRG 1 cut(s) 1588
Aor13HI TCCGGA 1 cut(s) 130
AoxI GGCC 3 cut(s) 537, 976, 1775
ApeKI GCWGC 2 cut(s) 365, 958
ApoI RAATTY 5 cut(s) 333, 985, 1099, 1667, 1804
Asp700I GAANNNNTTC 1 cut(s) 1539
AspA2I CCTAGG 1 cut(s) 1778
AspS9I GGNCC 4 cut(s) 537, 976, 1455, 1775
AsuHPI GGTGA 5 cut(s) 80, 91, 520, 791, 1532
AvaI CYCGRG 1 cut(s) 1588
AvaII GGWCC 1 cut(s) 1455
AvrII CCTAGG 1 cut(s) 1778
BamHI GGATCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 798
BauI CACGAG 2 cut(s) 370, 600
BbsI GAAGAC 1 cut(s) 1202
BbvI GCAGC 2 cut(s) 377, 945
BccI CCATC 1 cut(s) 1222
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 3 cut(s) 289, 743, 1666
BfaI CTAG 2 cut(s) 636, 1779
BfrI CTTAAG 1 cut(s) 1373
BfuAI ACCTGC 1 cut(s) 493
BglII AGATCT 1 cut(s) 301
BisI GCNGC 2 cut(s) 366, 959
BlnI CCTAGG 1 cut(s) 1778
BlsI GCNGC 2 cut(s) 367, 960
BmcAI AGTACT 1 cut(s) 802
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 1455
BmeT110I CYCGRG 1 cut(s) 1588
BmgT120I GGNCC 4 cut(s) 537, 976, 1455, 1775
BmiI GGNNCC 3 cut(s) 201, 633, 977
BmrFI CCNGG 1 cut(s) 248
BmrI ACTGGG 3 cut(s) 61, 792, 1011
BmsI GCATC 6 cut(s) 247, 418, 621, 898, 1152, 1423
BmuI ACTGGG 3 cut(s) 61, 792, 1011
BpiI GAAGAC 1 cut(s) 1202
BpmI CTGGAG 1 cut(s) 995
Bpu10I CCTNAGC 1 cut(s) 1355
BpuEI CTTGAG 2 cut(s) 271, 1532
Bsa29I ATCGAT 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 1166
BsaJI CCNNGG 4 cut(s) 247, 1437, 1712, 1778
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 407, 1045
Bse1I ACTGG 4 cut(s) 56, 798, 1017, 1035
Bse3DI GCAATG 2 cut(s) 968, 1446
Bse8I GATNNNNATC 1 cut(s) 1166
BseAI TCCGGA 1 cut(s) 130
BseBI CCWGG 1 cut(s) 248
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 4 cut(s) 247, 1437, 1712, 1778
BseGI GGATG 3 cut(s) 433, 794, 1390
BseJI GATNNNNATC 1 cut(s) 1166
BseLI CCNNNNNNNGG 2 cut(s) 407, 1045
BseMI GCAATG 2 cut(s) 968, 1446
BseNI ACTGG 4 cut(s) 56, 798, 1017, 1035
BseXI GCAGC 2 cut(s) 377, 945
BseYI CCCAGC 1 cut(s) 759
BsgI GTGCAG 1 cut(s) 864
BshFI GGCC 3 cut(s) 539, 978, 1777
BshVI ATCGAT 1 cut(s) 380
BsiHKCI CYCGRG 1 cut(s) 1588
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 4 cut(s) 20, 151, 1005, 1591
BslI CCNNNNNNNGG 2 cut(s) 407, 1045
BsmAI GTCTC 3 cut(s) 289, 743, 1666
BsmFI GGGAC 4 cut(s) 20, 151, 1005, 1591
BsmI GAATGC 1 cut(s) 1405
BsnI GGCC 3 cut(s) 539, 978, 1777
BsoBI CYCGRG 1 cut(s) 1588
Bsp1286I GDGCHC 1 cut(s) 798
Bsp13I TCCGGA 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 5 cut(s) 127, 199, 290, 301, 1133
BspACI CCGC 6 cut(s) 13, 500, 610, 648, 786, 1342
BspANI GGCC 3 cut(s) 539, 978, 1777
BspDI ATCGAT 1 cut(s) 380
BspEI TCCGGA 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 201, 633, 977
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 3 cut(s) 122, 194, 207
BspQI GCTCTTC 1 cut(s) 918
BspTI CTTAAG 1 cut(s) 1373
BsrBI CCGCTC 1 cut(s) 648
BsrDI GCAATG 2 cut(s) 968, 1446
BsrGI TGTACA 1 cut(s) 213
BsrI ACTGG 4 cut(s) 56, 798, 1017, 1035
BssECI CCNNGG 4 cut(s) 247, 1437, 1712, 1778
BssMI GATC 5 cut(s) 127, 199, 290, 301, 1133
BssSI CACGAG 2 cut(s) 370, 600
BssT1I CCWWGG 2 cut(s) 1712, 1778
Bst2BI CACGAG 2 cut(s) 370, 600
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 5 cut(s) 79, 885, 1048, 1600, 1764
Bst6I CTCTTC 2 cut(s) 384, 918
BstAFI CTTAAG 1 cut(s) 1373
BstAUI TGTACA 1 cut(s) 213
BstC8I GCNNGC 3 cut(s) 757, 980, 1070
BstDEI CTNAG 1 cut(s) 1355
BstENI CCTNNNNNAGG 1 cut(s) 405
BstF5I GGATG 3 cut(s) 433, 794, 1390
BstKTI GATC 5 cut(s) 130, 202, 293, 304, 1136
BstMAI GTCTC 3 cut(s) 289, 743, 1666
BstMBI GATC 5 cut(s) 127, 199, 290, 301, 1133
BstMWI GCNNNNNNNGC 2 cut(s) 645, 1637
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 1072
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 377, 945
BstV2I GAAGAC 1 cut(s) 1202
BstX2I RGATCY 2 cut(s) 199, 301
BstXI CCANNNNNNTGG 1 cut(s) 51
BstYI RGATCY 2 cut(s) 199, 301
Bsu15I ATCGAT 1 cut(s) 380
BsuRI GGCC 3 cut(s) 539, 978, 1777
BsuTUI ATCGAT 1 cut(s) 380
BtsCI GGATG 3 cut(s) 433, 794, 1390
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 3 cut(s) 876, 881, 1028
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 3 cut(s) 757, 980, 1070
Cfr13I GGNCC 4 cut(s) 537, 976, 1455, 1775
ClaI ATCGAT 1 cut(s) 380
Csp6I GTAC 4 cut(s) 214, 710, 727, 801
CspCI CAANNNNNGTGG 2 cut(s) 936, 971
CviAII CATG 7 cut(s) 517, 707, 1069, 1280, 1452, 1687, 1769
CviQI GTAC 4 cut(s) 214, 710, 727, 801
DdeI CTNAG 1 cut(s) 1355
DpnI GATC 5 cut(s) 129, 201, 292, 303, 1135
DpnII GATC 5 cut(s) 127, 199, 290, 301, 1133
Eam1104I CTCTTC 2 cut(s) 384, 918
EarI CTCTTC 2 cut(s) 384, 918
EciI GGCGGA 1 cut(s) 801
Eco130I CCWWGG 2 cut(s) 1712, 1778
Eco24I GRGCYC 1 cut(s) 798
Eco32I GATATC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 1455
Eco57I CTGAAG 2 cut(s) 408, 899
Eco88I CYCGRG 1 cut(s) 1588
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoO109I RGGNCCY 3 cut(s) 537, 976, 1775
EcoRII CCWGG 1 cut(s) 246
EcoRV GATATC 1 cut(s) 378
EcoT14I CCWWGG 2 cut(s) 1712, 1778
EcoT38I GRGCYC 1 cut(s) 798
ErhI CCWWGG 2 cut(s) 1712, 1778
FaeI CATG 7 cut(s) 520, 710, 1072, 1283, 1455, 1690, 1772
FalI AAGNNNNNCTT 4 cut(s) 264, 296, 1527, 1559
FaqI GGGAC 4 cut(s) 20, 151, 1005, 1591
FatI CATG 7 cut(s) 516, 706, 1068, 1279, 1451, 1686, 1768
FauNDI CATATG 1 cut(s) 1380
Fnu4HI GCNGC 2 cut(s) 366, 959
FokI GGATG 3 cut(s) 440, 801, 1397
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 2 cut(s) 366, 959
FspBI CTAG 2 cut(s) 636, 1779
GluI GCNGC 2 cut(s) 366, 959
GsaI CCCAGC 1 cut(s) 763
GsuI CTGGAG 1 cut(s) 995
HaeIII GGCC 3 cut(s) 539, 978, 1777
HapII CCGG 1 cut(s) 131
Hin1II CATG 7 cut(s) 520, 710, 1072, 1283, 1455, 1690, 1772
HincII GTYRAC 1 cut(s) 936
HindII GTYRAC 1 cut(s) 936
HinfI GANTC 5 cut(s) 23, 71, 511, 932, 1149
HpaII CCGG 1 cut(s) 131
HphI GGTGA 5 cut(s) 80, 91, 520, 791, 1532
Hpy166II GTNNAC 3 cut(s) 319, 936, 1745
Hpy188I TCNGA 5 cut(s) 199, 830, 1138, 1154, 1576
Hpy188III TCNNGA 7 cut(s) 125, 131, 288, 568, 905, 1178, 1588
Hpy8I GTNNAC 3 cut(s) 319, 936, 1745
Hpy99I CGWCG 1 cut(s) 1764
HpyAV CCTTC 3 cut(s) 558, 700, 776
HpyCH4III ACNGT 5 cut(s) 79, 885, 1048, 1600, 1764
HpyCH4IV ACGT 2 cut(s) 1113, 1754
HpyF10VI GCNNNNNNNGC 2 cut(s) 645, 1637
HpyF3I CTNAG 1 cut(s) 1355
HpySE526I ACGT 2 cut(s) 1113, 1754
Hsp92II CATG 7 cut(s) 520, 710, 1072, 1283, 1455, 1690, 1772
Kpn2I TCCGGA 1 cut(s) 130
Kzo9I GATC 5 cut(s) 127, 199, 290, 301, 1133
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 3 cut(s) 637, 716, 1690
Lsp1109I GCAGC 2 cut(s) 377, 945
LweI GCATC 6 cut(s) 247, 418, 621, 898, 1152, 1423
MaeI CTAG 2 cut(s) 636, 1779
MaeII ACGT 2 cut(s) 1113, 1754
MaeIII GTNAC 6 cut(s) 274, 295, 553, 812, 1194, 1578
MalI GATC 5 cut(s) 129, 201, 292, 303, 1135
MbiI CCGCTC 1 cut(s) 648
MboI GATC 5 cut(s) 127, 199, 290, 301, 1133
MflI RGATCY 2 cut(s) 199, 301
MhlI GDGCHC 1 cut(s) 798
MlyI GAGTC 2 cut(s) 17, 941
MmeI TCCRAC 3 cut(s) 909, 1101, 1768
MroI TCCGGA 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 1539
MseI TTAA 9 cut(s) 423, 666, 807, 1052, 1374, 1419, 1545, 1557, 1602
MslI CAYNNNNRTG 2 cut(s) 1203, 1383
MspCI CTTAAG 1 cut(s) 1373
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 1405
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 645, 1637
NdeI CATATG 1 cut(s) 1380
NdeII GATC 5 cut(s) 127, 199, 290, 301, 1133
NlaIII CATG 7 cut(s) 520, 710, 1072, 1283, 1455, 1690, 1772
NlaIV GGNNCC 3 cut(s) 201, 633, 977
NmeAIII GCCGAG 1 cut(s) 1462
NmuCI GTSAC 1 cut(s) 812
NspI RCATGY 1 cut(s) 1072
PaeI GCATGC 1 cut(s) 1072
PaeR7I CTCGAG 1 cut(s) 1588
PaqCI CACCTGC 1 cut(s) 493
PciSI GCTCTTC 1 cut(s) 918
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PctI GAATGC 1 cut(s) 1405
PdmI GAANNNNTTC 1 cut(s) 1539
PfeI GAWTC 3 cut(s) 71, 511, 1149
PkrI GCNGC 2 cut(s) 367, 960
PleI GAGTC 2 cut(s) 17, 940
PpsI GAGTC 2 cut(s) 17, 940
PsiI TTATAA 1 cut(s) 1811
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 759
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 3 cut(s) 201, 633, 977
PspPI GGNCC 4 cut(s) 537, 976, 1455, 1775
PsuI RGATCY 2 cut(s) 199, 301
RsaI GTAC 4 cut(s) 215, 711, 728, 802
RsaNI GTAC 4 cut(s) 214, 710, 727, 801
RseI CAYNNNNRTG 2 cut(s) 1203, 1383
SapI GCTCTTC 1 cut(s) 918
SaqAI TTAA 9 cut(s) 423, 666, 807, 1052, 1374, 1419, 1545, 1557, 1602
SatI GCNGC 2 cut(s) 366, 959
Sau3AI GATC 5 cut(s) 127, 199, 290, 301, 1133
Sau96I GGNCC 4 cut(s) 537, 976, 1455, 1775
ScaI AGTACT 1 cut(s) 802
SchI GAGTC 2 cut(s) 17, 941
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 798
SfaNI GCATC 6 cut(s) 247, 418, 621, 898, 1152, 1423
Sfr274I CTCGAG 1 cut(s) 1588
SinI GGWCC 1 cut(s) 1455
SlaI CTCGAG 1 cut(s) 1588
SmiMI CAYNNNNRTG 2 cut(s) 1203, 1383
SmlI CTYRAG 4 cut(s) 286, 1373, 1511, 1588
SmoI CTYRAG 4 cut(s) 286, 1373, 1511, 1588
SphI GCATGC 1 cut(s) 1072
SsiI CCGC 6 cut(s) 13, 500, 610, 648, 786, 1342
SspI AATATT 2 cut(s) 165, 1471
SspMI CTAG 2 cut(s) 636, 1779
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 2 cut(s) 1712, 1778
TaaI ACNGT 5 cut(s) 79, 885, 1048, 1600, 1764
TaiI ACGT 2 cut(s) 1116, 1757
TaqI TCGA 5 cut(s) 380, 888, 1147, 1284, 1589
TatI WGTACW 3 cut(s) 213, 709, 800
TfiI GAWTC 3 cut(s) 71, 511, 1149
Tru1I TTAA 9 cut(s) 423, 666, 807, 1052, 1374, 1419, 1545, 1557, 1602
Tru9I TTAA 9 cut(s) 423, 666, 807, 1052, 1374, 1419, 1545, 1557, 1602
TscAI CASTG 3 cut(s) 883, 888, 1035
TseFI GTSAC 1 cut(s) 812
TseI GCWGC 2 cut(s) 365, 958
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 4 cut(s) 110, 254, 1268, 1401
TspGWI ACGGA 1 cut(s) 1171
TspRI CASTG 3 cut(s) 883, 888, 1035
Vha464I CTTAAG 1 cut(s) 1373
VpaK11BI GGWCC 1 cut(s) 1455
XagI CCTNNNNNAGG 1 cut(s) 405
XapI RAATTY 5 cut(s) 333, 985, 1099, 1667, 1804
XceI RCATGY 1 cut(s) 1072
XhoI CTCGAG 1 cut(s) 1588
XmaJI CCTAGG 1 cut(s) 1778
XmnI GAANNNNTTC 1 cut(s) 1539
XspI CTAG 2 cut(s) 636, 1779
ZrmI AGTACT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.