pycom03g05360

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
4207853 .. 4215105
7253 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g05360.4

Sequence Viewer

Length: 3315 bp
ATGCAACCTGAAAATAAATTAAGTTGCTTATGGAGGACAGAGGATCCTGACAAGTCTTTGGATCAAGAGTACTGGAAGAAGATATTCATATCATCATGTTTGTGTGCTATTTTAATTGATCCATTGTTCCTCTACATACCCATTCTCAAGGATGATATCAAGTGCCTTATGTTAGACCCAAAGTTGAAGATAGCCGTTATTCTTTTAAGATTAGTCACAGATATTTTCTATTTAATTGACATTATTATTCGAATTTATAGATCTGAGAACTATTCGGATTTAATTGTTAAACTTAGATGCAGACAAAACCGGATGAATTTCATTTTTGTATTGAGATCTGGTGTGTCAACAATAGCCAAGACAATATGGACGTCAAAAGATATCTTAATTGACATTGTAGCTATTCTTCCCCTTCTACAAGTGGCAATTCTCATTTTCTTCTCAAAAATGAGTGACTTGAGATCTTTGACTACAACAAGGATGGTTCTTATGAACGTATTTGCTTTGTTGCAATACATGCCACGAGTTCTTCGCATCTACCTCTCATCTATGGAACTTAAAAGGACTCTTGAAGAAGAGATTCGAGAGACTCCCATATGGATTAAAGGTGTACTCAATTTCTGTATGTACATTATTGCTAGCCATATTGTCGGAGCCCTGTGGTATTTTTTTGCTATTCAACGAATGATGGTTTGTTGGCATTCTGCATGTCGAAAAGATGATGGATGTGATAACAGAATTTTTGGTTGTCATGATCACCACTTATTTAGAAATACCACAATTCTAAATGATTTATGCCCTGTCAGTGTTAGTGACAATTCATCAGACACCATGCACTTCGATTTTGGTATATTTGTTACTGTGCTTCAATTTGGTGTTGTAGGATCAACCAATTATTTCCAAAAGTTCTTGAACTGTTTCTGGTGGGGTTTACGAAATTTAAGTTCCCTTGGTTCAAATCTTGAGCCGAGTGTAGATGGATGGGAGAACCTCTATACGGTTTCTATTTCTATAACTGGCTTGCTCCTGTTTTTATATCTCATTGGAAATTTGCAGATGTATATGCAAGTTGAGTCTACAAGAACAGAGAATCGCATGCAAATGAGACGGAAGATGAAGGGAAAAGATAAAGAAATAGAATTGTGGTTATTTAAAAATGGCATTCCCACCATGTTGAATCAGGATATCAAGTTGCAGATTAGGGATAAGGTAAAACAAGCACTTGAAGAGTATACGGATGCTAATTTGGATAATATTCTCCCTCTTCTTCCCCAGAATGTTCAAAGCCGTATAAAAGAATTTATTCCTTTGTCCAAGTTGAAGCAAGGGCGAATGTTTCAACTGATGGATGAAGGTGTGTGGGAAAAAATCTATCAGAAATTCGAGCCCGTGAGGTATACTGAGAACGAAGATATTATTCAAAAGGATCAACCACTTGACAAGATTCTCTTCATTGTAGACGGACATGTATCCATTGAAGAGAGATCATGTGATTCTGATAGTTCAAAACGAGGTGCGGGAGAATTATTTGGAGAAGAACTTCTATGTTGGCCATTCTCCAAGTCTTTCCATCACACAAAACCGTTGGCAACTGAAACTGTCAAGGCAATTGATGTTGTTGAAGCCCTTGCTCTCAAGGCACACGACTTGAAAAGTATATACGATCAACCAAACATTGCAAAAAAAGAGAAGACTAGACACAGAAGAATGATGAAAGAGAAGATGGAGCAAGATATAGATCGGTTGATACGAATAAATGTGATCCCTGAAAAGTTGAATCCGTATGTGAAGTCACCGATCATGGAAAAGGTAGAAGAACTATTTCAAGGAGACAAGGATGTTTATTGGGATACTCTCGTTATTTGTAGGGATGCTCTCCCTTTTGATCTTGATAATCTCGTTTCTCTTCTTCCCTTGGAATTTCAAGACGGGATCAAAAGGAACATGCCATTGACTAAGTTGAAGGAGATGCCAGCGTTCAAAAACATGGAAGAATCAGTAGTGCTGAAAAAAATTTGTCGCCATCTTCAGCCCAAGAAGTATAATCGTTACGATAACATTATTCAAAAGGGTGACCCAATTCAAATGTTTTTCATTGTGGAAGGGGCAATAGCCCTTGAAGGCTGCGTAAAAGGCGCAGGAGAGTCCTATGGAGGAGAACTTCTTGTTTGGCCATTCTCTACCTCTTTCCCTGACAGAGTACCTACTACAGCAGCTGAGTCTGTTAAGGCAAATACGACTGTTGTTGAAGCCCTTGTTCTGAAGGCTAGCGACATGAAGAGTGTAGCCATTGAATTTCGGAAGCATTTCATCAAAAACTACGGCAGACTCCTACAAAATTTGGTTAATTGTGTAAGCCCTATCAGTACAACGCTGGCGCCATCATCTTCGGAGGCAGTCTTAAAATTCTTTACTGAAGAGGAACTTGAGGAGGCCACAAGAAACTGCAGTGATGATGACTACGTAAATGAAGAAGGCTACGGAATATTTTACCACTCAAAATTACATGGAAGAGATGTCGTCATAAAAAGGTGCAACAGTACTACTACTACTGGTGAGCAGTACATCCAGAGTCAACGTTTGGTTCAGGAGGCATTTGTTCTTTCTGAATTCAGACACAAAAATGTGGTGAGGCTGTTAGGTTGTTGTTTAGCGACAAAATGGCCTATAATGGTTTATGATTATGACGGCACCTATGCTTGGACTCTTTCTCAACACATTCACGTAAAGATACCGGCACTATACTCGCTGGAATCACGAATGAAGATAGCAGCGGATACTGCAGGAGCTCTAGCATGCTTGCACTCCATGTATGTCATACACCGAGATGTGAGGACACAGAACATATTAATAGATCGCACAACTTACATTGCAAGAGTTTCCGGTTTTGGATTTTCACGATTGCTTCACGAAGATGAAGATGAAATGGAAGATGATGTATCAACTTTGCCAGAGACATCGGTATACTTAGATCCCGAGTATCTTAAATCGCACGTGCTAACAGAGAAGAGTGACGTCTATGGCTTTGGAGTTGTTCTAGTGGAGCTACTAACACGTCGAAAGCCAGTTTCCTATCACAGACCTGAGGGATCCCTAGCAAACAAGTTTGTTTGTTCAGTGCAAGAGGGTCGCTTGAACCAAATTCTCGATTATAAATTAATGAAAGACGAGTTAAGTTTTGAGATAGCCAAAAAAGTGAGCGAGCTTGCCGTGACATGTTTGAGGTCAAGGGGGGAGGAAAGGCCTTCCATGGAAAAAGTAGCTGTGGAGCTTGAAGCAGTAGTGCAAACTATTATAAACAGTACAAAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

1105

Amino Acids

127.39

Weight (kDa)

6.42

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3153, 3296
AatII GACGTC 2 cut(s) 374, 3018
AccB1I GGYRCC 2 cut(s) 2377, 2690
AccI GTMKAC 5 cut(s) 1076, 1232, 1397, 1458, 2964
AciI CCGC 2 cut(s) 1517, 2774
AclI AACGTT 1 cut(s) 2578
AcoI YGGCCR 2 cut(s) 1550, 2171
AcuI CTGAAG 3 cut(s) 2012, 2282, 2436
AcvI CACGTG 1 cut(s) 2995
AcyI GRCGYC 3 cut(s) 371, 2378, 3015
AfaI GTAC 8 cut(s) 71, 612, 629, 2202, 2368, 2542, 2564, 3304
AfiI CCNNNNNNNGG 2 cut(s) 997, 2700
AflIII ACRYGT 3 cut(s) 1465, 3053, 3215
AjiI CACGTC 1 cut(s) 3056
AluBI AGCT 7 cut(s) 401, 2216, 2789, 3046, 3205, 3263, 3271
AluI AGCT 7 cut(s) 401, 2216, 2789, 3046, 3205, 3263, 3271
Alw21I GWGCWC 1 cut(s) 2791
Alw26I GTCTC 4 cut(s) 581, 1099, 1824, 2948
AlwNI CAGNNNCTG 1 cut(s) 2216
Ama87I CYCGRG 1 cut(s) 2975
AoxI GGCC 5 cut(s) 1550, 2171, 2433, 2663, 3242
ApeKI GCWGC 3 cut(s) 2124, 2213, 2771
AseI ATTAAT 2 cut(s) 2849, 3158
Asp700I GAANNNNTTC 7 cut(s) 83, 579, 917, 1302, 1539, 1821, 2306
AspLEI GCGC 2 cut(s) 2138, 2380
AsuHPI GGTGA 5 cut(s) 749, 1785, 2084, 2567, 2641
AsuII TTCGAA 1 cut(s) 250
AsuNHI GCTAGC 2 cut(s) 638, 2267
AvaI CYCGRG 1 cut(s) 2975
AxyI CCTNAGG 1 cut(s) 3084
BaeI ACNNNNGTAYC 2 cut(s) 1842, 1875
BalI TGGCCA 2 cut(s) 1552, 2173
BamHI GGATCC 2 cut(s) 43, 3089
BanI GGYRCC 2 cut(s) 2377, 2690
BanII GRGCYC 3 cut(s) 658, 1389, 2791
BarI GAAGNNNNNNTAC 2 cut(s) 390, 422
BauI CACGAG 1 cut(s) 522
BbrPI CACGTG 1 cut(s) 2995
BbsI GAAGAC 1 cut(s) 1697
Bbv12I GWGCWC 1 cut(s) 2791
BbvI GCAGC 3 cut(s) 2111, 2225, 2783
BceAI ACGGC 5 cut(s) 179, 1272, 2338, 2704, 3194
BcgI CGANNNNNNTGC 4 cut(s) 2727, 2761, 3110, 3144
BciVI GTATCC 3 cut(s) 1480, 1843, 2770
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 4 cut(s) 581, 1099, 1824, 2948
BfaI CTAG 6 cut(s) 639, 1695, 2268, 2792, 3038, 3095
BfmI CTRYAG 3 cut(s) 2208, 2446, 2781
BfoI RGCGCY 1 cut(s) 2381
BfuI GTATCC 3 cut(s) 1480, 1843, 2770
BglII AGATCT 3 cut(s) 260, 335, 461
BisI GCNGC 3 cut(s) 2125, 2214, 2772
BlsI GCNGC 3 cut(s) 2126, 2215, 2773
BmcAI AGTACT 2 cut(s) 71, 2542
BmeT110I CYCGRG 1 cut(s) 2975
BmgBI CACGTC 1 cut(s) 3056
BmiI GGNNCC 5 cut(s) 45, 655, 2379, 2692, 3091
BmsI GCATC 5 cut(s) 287, 543, 1228, 1861, 1959
BmtI GCTAGC 2 cut(s) 642, 2271
BpiI GAAGAC 1 cut(s) 1697
Bpu14I TTCGAA 1 cut(s) 250
BpuEI CTTGAG 5 cut(s) 131, 478, 983, 1619, 2447
BsaAI YACGTR 3 cut(s) 2464, 2725, 2995
BsaBI GATNNNNATC 1 cut(s) 1737
BsaHI GRCGYC 3 cut(s) 371, 2378, 3015
BsaJI CCNNGG 3 cut(s) 949, 1914, 3249
BsaWI WCCGGW 2 cut(s) 309, 2882
Bsc4I CCNNNNNNNGG 2 cut(s) 997, 2700
Bse118I RCCGGY 1 cut(s) 2734
Bse1I ACTGG 4 cut(s) 77, 1021, 2557, 3065
Bse21I CCTNAGG 1 cut(s) 3084
Bse3DI GCAATG 2 cut(s) 1674, 2868
Bse8I GATNNNNATC 1 cut(s) 1737
BseDI CCNNGG 3 cut(s) 949, 1914, 3249
BseJI GATNNNNATC 1 cut(s) 1737
BseLI CCNNNNNNNGG 2 cut(s) 997, 2700
BseMI GCAATG 2 cut(s) 1674, 2868
BseMII CTCAG 4 cut(s) 255, 1392, 2208, 3075
BseNI ACTGG 4 cut(s) 77, 1021, 2557, 3065
BseRI GAGGAG 2 cut(s) 2169, 2444
BseXI GCAGC 3 cut(s) 2111, 2225, 2783
BshFI GGCC 5 cut(s) 1552, 2173, 2435, 2665, 3244
BshNI GGYRCC 2 cut(s) 2377, 2690
BsiHKAI GWGCWC 1 cut(s) 2791
BsiHKCI CYCGRG 1 cut(s) 2975
BsiSI CCGG 3 cut(s) 310, 2735, 2883
BslI CCNNNNNNNGG 2 cut(s) 997, 2700
BsmAI GTCTC 4 cut(s) 581, 1099, 1824, 2948
BsmBI CGTCTC 1 cut(s) 1099
BsmI GAATGC 2 cut(s) 700, 1161
BsnI GGCC 5 cut(s) 1552, 2173, 2435, 2665, 3244
BsoBI CYCGRG 1 cut(s) 2975
Bsp119I TTCGAA 1 cut(s) 250
Bsp1286I GDGCHC 3 cut(s) 658, 1389, 2791
Bsp1407I TGTACA 1 cut(s) 627
Bsp19I CCATGG 1 cut(s) 3249
BspACI CCGC 2 cut(s) 1517, 2774
BspANI GGCC 5 cut(s) 1552, 2173, 2435, 2665, 3244
BspCNI CTCAG 4 cut(s) 256, 1393, 2209, 3076
BspHI TCATGA 1 cut(s) 751
BspLI GGNNCC 5 cut(s) 45, 655, 2379, 2692, 3091
BspMAI CTGCAG 2 cut(s) 2450, 2785
BspOI GCTAGC 2 cut(s) 642, 2271
BspT104I TTCGAA 1 cut(s) 250
BspT107I GGYRCC 2 cut(s) 2377, 2690
BsrDI GCAATG 2 cut(s) 1674, 2868
BsrFI RCCGGY 1 cut(s) 2734
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 4 cut(s) 77, 1021, 2557, 3065
BssAI RCCGGY 1 cut(s) 2734
BssECI CCNNGG 3 cut(s) 949, 1914, 3249
BssNAI GTATAC 3 cut(s) 1233, 1398, 2965
BssNI GRCGYC 3 cut(s) 371, 2378, 3015
BssSI CACGAG 1 cut(s) 522
BssT1I CCWWGG 3 cut(s) 949, 1914, 3249
Bst1107I GTATAC 3 cut(s) 1233, 1398, 2965
Bst2BI CACGAG 1 cut(s) 522
Bst4CI ACNGT 8 cut(s) 862, 917, 1000, 1584, 1600, 2242, 2540, 3302
BstACI GRCGYC 3 cut(s) 371, 2378, 3015
BstAPI GCANNNNNTGC 1 cut(s) 517
BstAUI TGTACA 1 cut(s) 627
BstBAI YACGTR 3 cut(s) 2464, 2725, 2995
BstBI TTCGAA 1 cut(s) 250
BstDEI CTNAG 7 cut(s) 264, 293, 1401, 1956, 2217, 2968, 3084
BstDSI CCRYGG 1 cut(s) 3249
BstEII GGTNACC 1 cut(s) 2072
BstH2I RGCGCY 1 cut(s) 2381
BstHHI GCGC 2 cut(s) 2138, 2380
BstMAI GTCTC 4 cut(s) 581, 1099, 1824, 2948
BstMWI GCNNNNNNNGC 4 cut(s) 517, 1637, 2133, 2780
BstNSI RCATGY 7 cut(s) 520, 711, 1099, 1469, 1948, 2799, 3219
BstPI GGTNACC 1 cut(s) 2072
BstSFI CTRYAG 3 cut(s) 2208, 2446, 2781
BstSNI TACGTA 1 cut(s) 2464
BstV1I GCAGC 3 cut(s) 2111, 2225, 2783
BstV2I GAAGAC 1 cut(s) 1697
BstX2I RGATCY 6 cut(s) 43, 260, 335, 461, 2971, 3089
BstYI RGATCY 6 cut(s) 43, 260, 335, 461, 2971, 3089
BstZ17I GTATAC 3 cut(s) 1233, 1398, 2965
Bsu36I CCTNAGG 1 cut(s) 3084
BsuI GTATCC 3 cut(s) 1480, 1843, 2770
BsuRI GGCC 5 cut(s) 1552, 2173, 2435, 2665, 3244
BtgI CCRYGG 1 cut(s) 3249
BtrI CACGTC 1 cut(s) 3056
BtsI GCAGTG 1 cut(s) 2455
BtsIMutI CAGTG 3 cut(s) 811, 2455, 3123
CaiI CAGNNNCTG 1 cut(s) 2216
CciI TCATGA 1 cut(s) 751
CfoI GCGC 2 cut(s) 2138, 2380
Cfr10I RCCGGY 1 cut(s) 2734
Csp6I GTAC 8 cut(s) 70, 611, 628, 2201, 2367, 2541, 2563, 3303
CviQI GTAC 8 cut(s) 70, 611, 628, 2201, 2367, 2541, 2563, 3303
DdeI CTNAG 7 cut(s) 264, 293, 1401, 1956, 2217, 2968, 3084
DinI GGCGCC 1 cut(s) 2379
DraI TTTAAA 1 cut(s) 1153
EaeI YGGCCR 2 cut(s) 1550, 2171
Ecl136II GAGCTC 1 cut(s) 2789
Eco105I TACGTA 1 cut(s) 2464
Eco130I CCWWGG 3 cut(s) 949, 1914, 3249
Eco147I AGGCCT 1 cut(s) 3244
Eco24I GRGCYC 3 cut(s) 658, 1389, 2791
Eco32I GATATC 3 cut(s) 157, 382, 1186
Eco53kI GAGCTC 1 cut(s) 2789
Eco57I CTGAAG 3 cut(s) 2012, 2282, 2436
Eco72I CACGTG 1 cut(s) 2995
Eco81I CCTNAGG 1 cut(s) 3084
Eco88I CYCGRG 1 cut(s) 2975
Eco91I GGTNACC 1 cut(s) 2072
EcoICRI GAGCTC 1 cut(s) 2789
EcoO65I GGTNACC 1 cut(s) 2072
EcoRI GAATTC 1 cut(s) 2609
EcoRV GATATC 3 cut(s) 157, 382, 1186
EcoT14I CCWWGG 3 cut(s) 949, 1914, 3249
EcoT38I GRGCYC 3 cut(s) 658, 1389, 2791
EgeI GGCGCC 1 cut(s) 2379
EheI GGCGCC 1 cut(s) 2379
ErhI CCWWGG 3 cut(s) 949, 1914, 3249
Esp3I CGTCTC 1 cut(s) 1099
FalI AAGNNNNNCTT 4 cut(s) 1433, 1465, 2409, 2441
FauI CCCGC 1 cut(s) 1510
FauNDI CATATG 1 cut(s) 596
FbaI TGATCA 1 cut(s) 754
FblI GTMKAC 5 cut(s) 1076, 1232, 1397, 1458, 2964
Fnu4HI GCNGC 3 cut(s) 2125, 2214, 2772
FriOI GRGCYC 3 cut(s) 658, 1389, 2791
Fsp4HI GCNGC 3 cut(s) 2125, 2214, 2772
FspBI CTAG 6 cut(s) 639, 1695, 2268, 2792, 3038, 3095
GlaI GCGC 2 cut(s) 2137, 2379
GluI GCNGC 3 cut(s) 2125, 2214, 2772
HaeII RGCGCY 1 cut(s) 2381
HaeIII GGCC 5 cut(s) 1552, 2173, 2435, 2665, 3244
HapII CCGG 3 cut(s) 310, 2735, 2883
HhaI GCGC 2 cut(s) 2138, 2380
Hin1I GRCGYC 3 cut(s) 371, 2378, 3015
Hin6I GCGC 2 cut(s) 2136, 2378
HinP1I GCGC 2 cut(s) 2136, 2378
HincII GTYRAC 2 cut(s) 348, 2576
HindII GTYRAC 2 cut(s) 348, 2576
HpaII CCGG 3 cut(s) 310, 2735, 2883
HphI GGTGA 5 cut(s) 749, 1785, 2084, 2567, 2641
Hpy166II GTNNAC 9 cut(s) 348, 611, 932, 1077, 1233, 1398, 1459, 2576, 2965
Hpy8I GTNNAC 9 cut(s) 348, 611, 932, 1077, 1233, 1398, 1459, 2576, 2965
Hpy99I CGWCG 1 cut(s) 3060
HpyAV CCTTC 9 cut(s) 422, 1111, 1346, 1957, 2096, 2114, 2257, 2468, 3255
HpyCH4III ACNGT 8 cut(s) 862, 917, 1000, 1584, 1600, 2242, 2540, 3302
HpyCH4IV ACGT 8 cut(s) 371, 495, 2463, 2578, 2724, 2994, 3015, 3055
HpyF10VI GCNNNNNNNGC 4 cut(s) 517, 1637, 2133, 2780
HpyF3I CTNAG 7 cut(s) 264, 293, 1401, 1956, 2217, 2968, 3084
HpySE526I ACGT 8 cut(s) 371, 495, 2463, 2578, 2724, 2994, 3015, 3055
Hsp92I GRCGYC 3 cut(s) 371, 2378, 3015
HspAI GCGC 2 cut(s) 2136, 2378
KasI GGCGCC 1 cut(s) 2377
Ksp22I TGATCA 1 cut(s) 754
LmnI GCTCC 6 cut(s) 653, 1029, 1726, 2786, 3043, 3268
Lsp1109I GCAGC 3 cut(s) 2111, 2225, 2783
LweI GCATC 5 cut(s) 287, 543, 1228, 1861, 1959
MaeI CTAG 6 cut(s) 639, 1695, 2268, 2792, 3038, 3095
MaeII ACGT 8 cut(s) 371, 495, 2463, 2578, 2724, 2994, 3015, 3055
MaeIII GTNAC 9 cut(s) 214, 452, 812, 856, 1791, 2048, 2072, 3011, 3211
MfeI CAATTG 1 cut(s) 1608
MflI RGATCY 6 cut(s) 43, 260, 335, 461, 2971, 3089
MhlI GDGCHC 3 cut(s) 658, 1389, 2791
MlsI TGGCCA 2 cut(s) 1552, 2173
MluNI TGGCCA 2 cut(s) 1552, 2173
Mly113I GGCGCC 1 cut(s) 2378
MlyI GAGTC 8 cut(s) 559, 583, 1082, 2153, 2228, 2322, 2581, 2698
MmeI TCCRAC 1 cut(s) 631
Mox20I TGGCCA 2 cut(s) 1552, 2173
MroXI GAANNNNTTC 7 cut(s) 83, 579, 917, 1302, 1539, 1821, 2306
MscI TGGCCA 2 cut(s) 1552, 2173
MslI CAYNNNNRTG 5 cut(s) 100, 1100, 2622, 2826, 2913
Msp20I TGGCCA 2 cut(s) 1552, 2173
MspA1I CMGCKG 2 cut(s) 2216, 2774
MspI CCGG 3 cut(s) 310, 2735, 2883
MunI CAATTG 1 cut(s) 1608
Mva1269I GAATGC 2 cut(s) 700, 1161
MwoI GCNNNNNNNGC 4 cut(s) 517, 1637, 2133, 2780
NarI GGCGCC 1 cut(s) 2378
NcoI CCATGG 1 cut(s) 3249
NdeI CATATG 1 cut(s) 596
NheI GCTAGC 2 cut(s) 638, 2267
NlaIV GGNNCC 5 cut(s) 45, 655, 2379, 2692, 3091
NmeAIII GCCGAG 1 cut(s) 993
NmuCI GTSAC 7 cut(s) 214, 452, 812, 1791, 2072, 3011, 3211
NspI RCATGY 7 cut(s) 520, 711, 1099, 1469, 1948, 2799, 3219
NspV TTCGAA 1 cut(s) 250
PaeI GCATGC 2 cut(s) 1099, 2799
PagI TCATGA 1 cut(s) 751
PceI AGGCCT 1 cut(s) 3244
PciI ACATGT 2 cut(s) 1465, 3215
PcsI WCGNNNNNNNCGW 1 cut(s) 1747
PctI GAATGC 2 cut(s) 700, 1161
PdmI GAANNNNTTC 7 cut(s) 83, 579, 917, 1302, 1539, 1821, 2306
PfeI GAWTC 8 cut(s) 580, 1090, 1177, 1444, 1493, 1777, 1994, 2753
PkrI GCNGC 3 cut(s) 2126, 2215, 2773
PleI GAGTC 8 cut(s) 559, 583, 1081, 2152, 2227, 2322, 2580, 2698
PluTI GGCGCC 1 cut(s) 2381
PmaCI CACGTG 1 cut(s) 2995
PmlI CACGTG 1 cut(s) 2995
PpsI GAGTC 8 cut(s) 559, 583, 1081, 2152, 2227, 2322, 2580, 2698
Ppu21I YACGTR 3 cut(s) 2464, 2725, 2995
PscI ACATGT 2 cut(s) 1465, 3215
PshBI ATTAAT 2 cut(s) 2849, 3158
PsiI TTATAA 2 cut(s) 3153, 3296
Psp124BI GAGCTC 1 cut(s) 2791
Psp1406I AACGTT 1 cut(s) 2578
PspCI CACGTG 1 cut(s) 2995
PspEI GGTNACC 1 cut(s) 2072
PspN4I GGNNCC 5 cut(s) 45, 655, 2379, 2692, 3091
PstI CTGCAG 2 cut(s) 2450, 2785
PstNI CAGNNNCTG 1 cut(s) 2216
PsuI RGATCY 6 cut(s) 43, 260, 335, 461, 2971, 3089
PvuII CAGCTG 1 cut(s) 2216
RsaI GTAC 8 cut(s) 71, 612, 629, 2202, 2368, 2542, 2564, 3304
RsaNI GTAC 8 cut(s) 70, 611, 628, 2201, 2367, 2541, 2563, 3303
RseI CAYNNNNRTG 5 cut(s) 100, 1100, 2622, 2826, 2913
SacI GAGCTC 1 cut(s) 2791
SatI GCNGC 3 cut(s) 2125, 2214, 2772
ScaI AGTACT 2 cut(s) 71, 2542
SchI GAGTC 8 cut(s) 559, 583, 1082, 2153, 2228, 2322, 2581, 2698
SduI GDGCHC 3 cut(s) 658, 1389, 2791
SfaNI GCATC 5 cut(s) 287, 543, 1228, 1861, 1959
SfcI CTRYAG 3 cut(s) 2208, 2446, 2781
SfoI GGCGCC 1 cut(s) 2379
SfuI TTCGAA 1 cut(s) 250
SmiMI CAYNNNNRTG 5 cut(s) 100, 1100, 2622, 2826, 2913
SmlI CTYRAG 5 cut(s) 146, 457, 962, 1634, 2426
SmoI CTYRAG 5 cut(s) 146, 457, 962, 1634, 2426
SnaBI TACGTA 1 cut(s) 2464
SphI GCATGC 2 cut(s) 1099, 2799
SseBI AGGCCT 1 cut(s) 3244
SsiI CCGC 2 cut(s) 1517, 2774
SspDI GGCGCC 1 cut(s) 2377
SspI AATATT 2 cut(s) 1255, 2487
SspMI CTAG 6 cut(s) 639, 1695, 2268, 2792, 3038, 3095
SstI GAGCTC 1 cut(s) 2791
StuI AGGCCT 1 cut(s) 3244
StyI CCWWGG 3 cut(s) 949, 1914, 3249
TaaI ACNGT 8 cut(s) 862, 917, 1000, 1584, 1600, 2242, 2540, 3302
TaiI ACGT 8 cut(s) 374, 498, 2466, 2581, 2727, 2997, 3018, 3058
TaqI TCGA 7 cut(s) 250, 583, 712, 840, 1383, 3058, 3147
TatI WGTACW 7 cut(s) 69, 610, 627, 2366, 2540, 2562, 3302
TfiI GAWTC 8 cut(s) 580, 1090, 1177, 1444, 1493, 1777, 1994, 2753
TscAI CASTG 3 cut(s) 811, 2455, 3123
TseFI GTSAC 7 cut(s) 214, 452, 812, 1791, 2072, 3011, 3211
TseI GCWGC 3 cut(s) 2124, 2213, 2771
Tsp45I GTSAC 7 cut(s) 214, 452, 812, 1791, 2072, 3011, 3211
TspGWI ACGGA 5 cut(s) 1123, 1250, 1476, 1770, 2496
TspRI CASTG 3 cut(s) 811, 2455, 3123
VspI ATTAAT 2 cut(s) 2849, 3158
XceI RCATGY 7 cut(s) 520, 711, 1099, 1469, 1948, 2799, 3219
XmiI GTMKAC 5 cut(s) 1076, 1232, 1397, 1458, 2964
XmnI GAANNNNTTC 7 cut(s) 83, 579, 917, 1302, 1539, 1821, 2306
XspI CTAG 6 cut(s) 639, 1695, 2268, 2792, 3038, 3095
ZraI GACGTC 2 cut(s) 372, 3016
ZrmI AGTACT 2 cut(s) 71, 2542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.