Rroxscaffold_2G00127250

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000017
Physical Location & Seq
Forward (+)
62705023 .. 62713191
8169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00127250.1

Sequence Viewer

Length: 1689 bp
ATGGGGGACTTACGCAACAATGACTCGTTTGTCATAGATATGCCAGAATACTGGGGATTAGTGGCCGGGGAATCTACGGTGAATGGTAAATCAATGAAAAAATTGCCTATAACAAAGGACATTCTTGATCCGGAGGGGACATTCTTTCCAATGTGGAATAAAATATTTGTGATAGCGTGTGTAGTTGCTGTCTTATCGGATCCTTTGTTTTTGTACATTCCTATCCTCAAAGATGATATGAAGTGCCTGGGATTTGATGCAAAGTTGAAGAAAGTAACTCTTGTCTCAAGATCAGTAACAGATCTGTTTTATGTCGTGGACATTATTTTGCAAATTTGTAGCAGACTTACTGCCAAGACATTTGCAGCCTCATGGATATCGATAACTGAAGAGGCATTTCCTTTGAAAGGAGAGAAATCAGTTAAGGATGCTCTGGCATTAGCCAAAAGGATTTCGCTCTCATATATTCTAATTGACATTTTAGCTGTTCTTCCCTGTCCGCAGGTGGTGATTCTCATGTTCTTTTCAAAAGTGAGGGCCTCAAAACCTTCGGTTACAAGGATATTTCTGAACTCTCTTGTTCTGTTCCAATATGTGCCACGAGTTCTCCGCATCTACCTTTCAGGCAAGGCTCCTAGCATAGAGAGCGGAATAGGACTATGGATTAAAGGCGTGTTCAATTTTTTTCCCTTCTTCCTTGCTGGTCATTCTGGTATGCTGGAGTCAACAGATTTTCCACAAAAGTTGCTGCAATGTTTCTGGTGGGGCCTGCGAAATTTGAGTTCTTTTGGTCAAAACCTCCAGCCTAGTCCCTATGCACTGGAAAACCTCTTTACGGTTTCAATTTCTATAAGTGGCATGCTACTATTTTTGATTTACCTCAATGCAAATTTGCAGACATATGTTGAGTTGGAAGCAAAAAGATCAGACAATCTTCGATTCAGACGGAAGATGCAAATCATAAATCCAGAAATTGATTTGTGGTTACATAAAAATGGTCTTCCTAAAGATCTGAAGATGGGAATAATGGATAATGTGCAACAAAAACTTGAAGAAAACAAAGATGTTCATGTGGAAAATATCCTCTCTATTCTTCCCTTGAAACATAAAAGACATATTATGCGACTTCTCCGCTTGGCTTCGCTAAGGAAACAAATGTATAAGGTATCAATGCTTAAGCATATGGATGAACAAGTGTTGAATGCAATCTGTGAGCATCTTAAACCTGTGATATATGCCGAGGACAGCTATATTATTCGGGAGGGGGAACCACTTGAGAAAATGATCTTCATCACACAAGGCATTGCATGGACCTATGCAACTAATATTGGTGGTGTAAGTAGTAGTTCATCAAACATTGATTGCCTTGAGAAAGGTGATTTTTATGGAGAAGAACTTCTTAATTGGGCATTTAATTTTGCCTCCTTTTCGGAGTTACCTATCTCGAACAGAACTGTTAAGTCCCAAAGAAAACTTGAAGCATTTGCTATCAGGGCTAACGACTTGCATAGTGTTGTCTCTAAATTCTGGTGGCATTTTAGCATGGAGCTTGAACCTGATAATCAACCAAGGAGGCGAGAACATTTGGCAACTTCTTGTTTACAGAAAACCTGGCGCCGGTATCATGCAGGGCCTCGGGGTGGAACTGGGTGGAAGAAATTTTATAATGATTTAGTGAAAACTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

562

Amino Acids

64.41

Weight (kDa)

9.21

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1665
AarI CACCTGC 1 cut(s) 493
AasI GACNNNNNNGTC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 1614
AccBSI CCGCTC 1 cut(s) 648
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 4 cut(s) 500, 610, 648, 1132
AclWI GGATC 3 cut(s) 122, 194, 207
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 5 cut(s) 333, 775, 889, 1523, 1658
AcuI CTGAAG 2 cut(s) 408, 1034
AcyI GRCGYC 1 cut(s) 1615
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 4 cut(s) 407, 835, 1617, 1640
AflII CTTAAG 1 cut(s) 1175
AjnI CCWGG 2 cut(s) 246, 1610
AluBI AGCT 3 cut(s) 485, 1248, 1549
AluI AGCT 3 cut(s) 485, 1248, 1549
Alw26I GTCTC 2 cut(s) 289, 1522
AlwI GGATC 3 cut(s) 122, 194, 207
Ama87I CYCGRG 1 cut(s) 1635
Aor13HI TCCGGA 1 cut(s) 130
AoxI GGCC 4 cut(s) 63, 537, 766, 1631
ApeKI GCWGC 2 cut(s) 365, 748
ApoI RAATTY 5 cut(s) 333, 775, 889, 1523, 1658
Asp700I GAANNNNTTC 1 cut(s) 1395
AspLEI GCGC 1 cut(s) 1617
AspS9I GGNCC 4 cut(s) 537, 766, 1311, 1631
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 3 cut(s) 91, 520, 1388
AvaI CYCGRG 1 cut(s) 1635
AvaII GGWCC 1 cut(s) 1311
BamHI GGATCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 1614
BauI CACGAG 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 992
BbvI GCAGC 2 cut(s) 377, 735
BccI CCATC 1 cut(s) 1012
BciT130I CCWGG 2 cut(s) 248, 1612
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 289, 1522
BfaI CTAG 2 cut(s) 636, 807
BfoI RGCGCY 1 cut(s) 1618
BfrI CTTAAG 1 cut(s) 1175
BfuAI ACCTGC 1 cut(s) 493
BglII AGATCT 2 cut(s) 301, 1009
BisI GCNGC 2 cut(s) 366, 749
BlsI GCNGC 2 cut(s) 367, 750
Bme1390I CCNGG 3 cut(s) 67, 248, 1612
Bme18I GGWCC 1 cut(s) 1311
BmeT110I CYCGRG 1 cut(s) 1635
BmgT120I GGNCC 4 cut(s) 537, 766, 1311, 1631
BmiI GGNNCC 5 cut(s) 201, 633, 767, 1269, 1616
BmrFI CCNGG 3 cut(s) 67, 248, 1612
BmrI ACTGGG 2 cut(s) 61, 1656
BmsI GCATC 5 cut(s) 247, 418, 621, 942, 1225
BmuI ACTGGG 2 cut(s) 61, 1656
BpiI GAAGAC 1 cut(s) 992
BpmI CTGGAG 2 cut(s) 740, 785
Bpu10I CCTNAGC 1 cut(s) 1145
BpuEI CTTGAG 3 cut(s) 271, 1295, 1388
BpuMI CCSGG 1 cut(s) 67
Bsa29I ATCGAT 1 cut(s) 380
BsaBI GATNNNNATC 2 cut(s) 956, 1289
BsaHI GRCGYC 1 cut(s) 1615
BsaJI CCNNGG 5 cut(s) 66, 247, 1239, 1568, 1634
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 4 cut(s) 407, 835, 1617, 1640
Bse118I RCCGGY 1 cut(s) 1617
Bse1I ACTGG 3 cut(s) 56, 825, 1651
Bse3DI GCAATG 2 cut(s) 758, 1302
Bse8I GATNNNNATC 2 cut(s) 956, 1289
BseAI TCCGGA 1 cut(s) 130
BseBI CCWGG 2 cut(s) 248, 1612
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 5 cut(s) 66, 247, 1239, 1568, 1634
BseGI GGATG 2 cut(s) 433, 1192
BseJI GATNNNNATC 2 cut(s) 956, 1289
BseLI CCNNNNNNNGG 4 cut(s) 407, 835, 1617, 1640
BseMI GCAATG 2 cut(s) 758, 1302
BseNI ACTGG 3 cut(s) 56, 825, 1651
BseXI GCAGC 2 cut(s) 377, 735
BshFI GGCC 4 cut(s) 65, 539, 768, 1633
BshNI GGYRCC 1 cut(s) 1614
BshVI ATCGAT 1 cut(s) 380
BsiHKCI CYCGRG 1 cut(s) 1635
BsiSI CCGG 3 cut(s) 66, 131, 1618
BslFI GGGAC 4 cut(s) 20, 151, 795, 1447
BslI CCNNNNNNNGG 4 cut(s) 407, 835, 1617, 1640
BsmAI GTCTC 2 cut(s) 289, 1522
BsmFI GGGAC 4 cut(s) 20, 151, 795, 1447
BsmI GAATGC 1 cut(s) 1207
BsnI GGCC 4 cut(s) 65, 539, 768, 1633
BsoBI CYCGRG 1 cut(s) 1635
Bsp13I TCCGGA 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 7 cut(s) 127, 199, 290, 301, 923, 1009, 1284
BspACI CCGC 4 cut(s) 500, 610, 648, 1132
BspANI GGCC 4 cut(s) 65, 539, 768, 1633
BspDI ATCGAT 1 cut(s) 380
BspEI TCCGGA 1 cut(s) 130
BspLI GGNNCC 5 cut(s) 201, 633, 767, 1269, 1616
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 3 cut(s) 122, 194, 207
BspT107I GGYRCC 1 cut(s) 1614
BspTI CTTAAG 1 cut(s) 1175
BsrBI CCGCTC 1 cut(s) 648
BsrDI GCAATG 2 cut(s) 758, 1302
BsrFI RCCGGY 1 cut(s) 1617
BsrGI TGTACA 1 cut(s) 213
BsrI ACTGG 3 cut(s) 56, 825, 1651
BssAI RCCGGY 1 cut(s) 1617
BssECI CCNNGG 5 cut(s) 66, 247, 1239, 1568, 1634
BssMI GATC 7 cut(s) 127, 199, 290, 301, 923, 1009, 1284
BssNI GRCGYC 1 cut(s) 1615
BssSI CACGAG 1 cut(s) 600
BssT1I CCWWGG 1 cut(s) 1568
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 248, 1612
Bst4CI ACNGT 3 cut(s) 79, 838, 1456
Bst6I CTCTTC 1 cut(s) 384
BstACI GRCGYC 1 cut(s) 1615
BstAFI CTTAAG 1 cut(s) 1175
BstAUI TGTACA 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 770, 860
BstDEI CTNAG 1 cut(s) 1145
BstENI CCTNNNNNAGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 433, 1192
BstH2I RGCGCY 1 cut(s) 1618
BstHHI GCGC 1 cut(s) 1617
BstKTI GATC 7 cut(s) 130, 202, 293, 304, 926, 1012, 1287
BstMAI GTCTC 2 cut(s) 289, 1522
BstMBI GATC 7 cut(s) 127, 199, 290, 301, 923, 1009, 1284
BstMWI GCNNNNNNNGC 2 cut(s) 645, 1493
BstNI CCWGG 2 cut(s) 248, 1612
BstNSI RCATGY 1 cut(s) 862
BstSCI CCNGG 3 cut(s) 65, 246, 1610
BstV1I GCAGC 2 cut(s) 377, 735
BstV2I GAAGAC 1 cut(s) 992
BstX2I RGATCY 3 cut(s) 199, 301, 1009
BstXI CCANNNNNNTGG 1 cut(s) 51
BstYI RGATCY 3 cut(s) 199, 301, 1009
Bsu15I ATCGAT 1 cut(s) 380
BsuRI GGCC 4 cut(s) 65, 539, 768, 1633
BsuTUI ATCGAT 1 cut(s) 380
BtsCI GGATG 2 cut(s) 433, 1192
BtsIMutI CAGTG 1 cut(s) 818
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 2 cut(s) 770, 860
CfoI GCGC 1 cut(s) 1617
Cfr10I RCCGGY 1 cut(s) 1617
Cfr13I GGNCC 4 cut(s) 537, 766, 1311, 1631
ClaI ATCGAT 1 cut(s) 380
Csp6I GTAC 1 cut(s) 214
CspCI CAANNNNNGTGG 2 cut(s) 726, 761
CviAII CATG 7 cut(s) 372, 517, 859, 1070, 1308, 1543, 1625
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 1145
DinI GGCGCC 1 cut(s) 1616
DpnI GATC 7 cut(s) 129, 201, 292, 303, 925, 1011, 1286
DpnII GATC 7 cut(s) 127, 199, 290, 301, 923, 1009, 1284
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 1568
Eco32I GATATC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 1311
Eco57I CTGAAG 2 cut(s) 408, 1034
Eco88I CYCGRG 1 cut(s) 1635
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoO109I RGGNCCY 3 cut(s) 537, 766, 1631
EcoRII CCWGG 2 cut(s) 246, 1610
EcoRV GATATC 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 1568
EgeI GGCGCC 1 cut(s) 1616
EheI GGCGCC 1 cut(s) 1616
ErhI CCWWGG 1 cut(s) 1568
FaeI CATG 7 cut(s) 375, 520, 862, 1073, 1311, 1546, 1628
FalI AAGNNNNNCTT 4 cut(s) 264, 296, 1383, 1415
FaqI GGGAC 4 cut(s) 20, 151, 795, 1447
FatI CATG 7 cut(s) 371, 516, 858, 1069, 1307, 1542, 1624
FauNDI CATATG 2 cut(s) 901, 1182
Fnu4HI GCNGC 2 cut(s) 366, 749
FokI GGATG 2 cut(s) 440, 1199
Fsp4HI GCNGC 2 cut(s) 366, 749
FspBI CTAG 2 cut(s) 636, 807
GlaI GCGC 1 cut(s) 1616
GluI GCNGC 2 cut(s) 366, 749
GsuI CTGGAG 2 cut(s) 740, 785
HaeII RGCGCY 1 cut(s) 1618
HaeIII GGCC 4 cut(s) 65, 539, 768, 1633
HapII CCGG 3 cut(s) 66, 131, 1618
HhaI GCGC 1 cut(s) 1617
Hin1I GRCGYC 1 cut(s) 1615
Hin1II CATG 7 cut(s) 375, 520, 862, 1073, 1311, 1546, 1628
Hin6I GCGC 1 cut(s) 1615
HinP1I GCGC 1 cut(s) 1615
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HinfI GANTC 5 cut(s) 23, 71, 511, 722, 939
HpaII CCGG 3 cut(s) 66, 131, 1618
HphI GGTGA 3 cut(s) 91, 520, 1388
Hpy166II GTNNAC 3 cut(s) 319, 726, 1601
Hpy188I TCNGA 6 cut(s) 199, 570, 928, 944, 1014, 1432
Hpy188III TCNNGA 6 cut(s) 125, 131, 288, 968, 1259, 1444
Hpy8I GTNNAC 3 cut(s) 319, 726, 1601
HpyAV CCTTC 2 cut(s) 558, 700
HpyCH4III ACNGT 3 cut(s) 79, 838, 1456
HpyF10VI GCNNNNNNNGC 2 cut(s) 645, 1493
HpyF3I CTNAG 1 cut(s) 1145
Hsp92I GRCGYC 1 cut(s) 1615
Hsp92II CATG 7 cut(s) 375, 520, 862, 1073, 1311, 1546, 1628
HspAI GCGC 1 cut(s) 1615
KasI GGCGCC 1 cut(s) 1614
Kpn2I TCCGGA 1 cut(s) 130
Kzo9I GATC 7 cut(s) 127, 199, 290, 301, 923, 1009, 1284
LmnI GCTCC 2 cut(s) 637, 1546
Lsp1109I GCAGC 2 cut(s) 377, 735
LweI GCATC 5 cut(s) 247, 418, 621, 942, 1225
MaeI CTAG 2 cut(s) 636, 807
MaeIII GTNAC 5 cut(s) 274, 295, 553, 984, 1434
MalI GATC 7 cut(s) 129, 201, 292, 303, 925, 1011, 1286
MbiI CCGCTC 1 cut(s) 648
MboI GATC 7 cut(s) 127, 199, 290, 301, 923, 1009, 1284
MflI RGATCY 3 cut(s) 199, 301, 1009
Mly113I GGCGCC 1 cut(s) 1615
MlyI GAGTC 2 cut(s) 17, 731
MmeI TCCRAC 1 cut(s) 891
MroI TCCGGA 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 1395
MseI TTAA 7 cut(s) 423, 666, 1176, 1221, 1401, 1413, 1458
MslI CAYNNNNRTG 3 cut(s) 38, 993, 1185
MspCI CTTAAG 1 cut(s) 1175
MspI CCGG 3 cut(s) 66, 131, 1618
MspR9I CCNGG 3 cut(s) 67, 248, 1612
Mva1269I GAATGC 1 cut(s) 1207
MvaI CCWGG 2 cut(s) 248, 1612
MwoI GCNNNNNNNGC 2 cut(s) 645, 1493
NarI GGCGCC 1 cut(s) 1615
NciI CCSGG 1 cut(s) 67
NdeI CATATG 2 cut(s) 901, 1182
NdeII GATC 7 cut(s) 127, 199, 290, 301, 923, 1009, 1284
NlaIII CATG 7 cut(s) 375, 520, 862, 1073, 1311, 1546, 1628
NlaIV GGNNCC 5 cut(s) 201, 633, 767, 1269, 1616
NmeAIII GCCGAG 1 cut(s) 1264
NspI RCATGY 1 cut(s) 862
PaeI GCATGC 1 cut(s) 862
PaqCI CACCTGC 1 cut(s) 493
PctI GAATGC 1 cut(s) 1207
PdmI GAANNNNTTC 1 cut(s) 1395
PfeI GAWTC 3 cut(s) 71, 511, 939
PkrI GCNGC 2 cut(s) 367, 750
PleI GAGTC 2 cut(s) 17, 730
PluTI GGCGCC 1 cut(s) 1618
PpsI GAGTC 2 cut(s) 17, 730
PsiI TTATAA 1 cut(s) 1665
Psp6I CCWGG 2 cut(s) 246, 1610
PspGI CCWGG 2 cut(s) 246, 1610
PspN4I GGNNCC 5 cut(s) 201, 633, 767, 1269, 1616
PspPI GGNCC 4 cut(s) 537, 766, 1311, 1631
PsuI RGATCY 3 cut(s) 199, 301, 1009
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 3 cut(s) 38, 993, 1185
SaqAI TTAA 7 cut(s) 423, 666, 1176, 1221, 1401, 1413, 1458
SatI GCNGC 2 cut(s) 366, 749
Sau3AI GATC 7 cut(s) 127, 199, 290, 301, 923, 1009, 1284
Sau96I GGNCC 4 cut(s) 537, 766, 1311, 1631
SchI GAGTC 2 cut(s) 17, 731
ScrFI CCNGG 3 cut(s) 67, 248, 1612
SfaNI GCATC 5 cut(s) 247, 418, 621, 942, 1225
SfoI GGCGCC 1 cut(s) 1616
SinI GGWCC 1 cut(s) 1311
SmiMI CAYNNNNRTG 3 cut(s) 38, 993, 1185
SmlI CTYRAG 4 cut(s) 286, 1175, 1274, 1367
SmoI CTYRAG 4 cut(s) 286, 1175, 1274, 1367
SphI GCATGC 1 cut(s) 862
SsiI CCGC 4 cut(s) 500, 610, 648, 1132
SspDI GGCGCC 1 cut(s) 1614
SspI AATATT 2 cut(s) 165, 1327
SspMI CTAG 2 cut(s) 636, 807
StyD4I CCNGG 3 cut(s) 65, 246, 1610
StyI CCWWGG 1 cut(s) 1568
TaaI ACNGT 3 cut(s) 79, 838, 1456
TaqI TCGA 3 cut(s) 380, 937, 1445
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 3 cut(s) 71, 511, 939
Tru1I TTAA 7 cut(s) 423, 666, 1176, 1221, 1401, 1413, 1458
Tru9I TTAA 7 cut(s) 423, 666, 1176, 1221, 1401, 1413, 1458
TscAI CASTG 1 cut(s) 825
TseI GCWGC 2 cut(s) 365, 748
TspDTI ATGAA 6 cut(s) 110, 254, 1058, 1203, 1279, 1338
TspGWI ACGGA 1 cut(s) 961
TspRI CASTG 1 cut(s) 825
Vha464I CTTAAG 1 cut(s) 1175
VpaK11BI GGWCC 1 cut(s) 1311
XagI CCTNNNNNAGG 1 cut(s) 405
XapI RAATTY 5 cut(s) 333, 775, 889, 1523, 1658
XceI RCATGY 1 cut(s) 862
XmnI GAANNNNTTC 1 cut(s) 1395
XspI CTAG 2 cut(s) 636, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.