Cyclic nucleotide-gated ion channel 1-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_1 | PF00076 | 9 - 80 | 3e-14 | RNA recognition motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 114 |
| AccBSI | CCGCTC | 1 cut(s) | 49 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AciI | CCGC | 2 cut(s) | 49, 472 |
| AcsI | RAATTY | 3 cut(s) | 17, 289, 318 |
| AgsI | TTSAA | 2 cut(s) | 294, 397 |
| AjnI | CCWGG | 1 cut(s) | 361 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 34 |
| AluBI | AGCT | 2 cut(s) | 300, 326 |
| AluI | AGCT | 2 cut(s) | 300, 326 |
| Alw26I | GTCTC | 1 cut(s) | 114 |
| Ama87I | CYCGRG | 1 cut(s) | 117 |
| AoxI | GGCC | 1 cut(s) | 137 |
| ApoI | RAATTY | 3 cut(s) | 17, 289, 318 |
| AspA2I | CCTAGG | 1 cut(s) | 461 |
| AsuHPI | GGTGA | 2 cut(s) | 64, 261 |
| AvaI | CYCGRG | 1 cut(s) | 117 |
| AvrII | CCTAGG | 1 cut(s) | 461 |
| BaeGI | GKGCMC | 1 cut(s) | 354 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 98, 132, 391, 425 |
| BciT130I | CCWGG | 1 cut(s) | 363 |
| BciVI | GTATCC | 1 cut(s) | 439 |
| BcoDI | GTCTC | 1 cut(s) | 114 |
| BfaI | CTAG | 1 cut(s) | 462 |
| BfuAI | ACCTGC | 1 cut(s) | 114 |
| BfuI | GTATCC | 1 cut(s) | 439 |
| BisI | GCNGC | 1 cut(s) | 472 |
| BlnI | CCTAGG | 1 cut(s) | 461 |
| BlsI | GCNGC | 1 cut(s) | 473 |
| Bme1390I | CCNGG | 1 cut(s) | 363 |
| BmeT110I | CYCGRG | 1 cut(s) | 117 |
| BmrFI | CCNGG | 1 cut(s) | 363 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| BsaAI | YACGTR | 1 cut(s) | 31 |
| BsaJI | CCNNGG | 2 cut(s) | 361, 461 |
| BsaWI | WCCGGW | 1 cut(s) | 206 |
| BseBI | CCWGG | 1 cut(s) | 363 |
| BseDI | CCNNGG | 2 cut(s) | 361, 461 |
| BseGI | GGATG | 1 cut(s) | 111 |
| BseMII | CTCAG | 3 cut(s) | 162, 174, 360 |
| BseRI | GAGGAG | 1 cut(s) | 188 |
| BseSI | GKGCMC | 1 cut(s) | 354 |
| BsgI | GTGCAG | 1 cut(s) | 92 |
| BshFI | GGCC | 1 cut(s) | 139 |
| BsiHKCI | CYCGRG | 1 cut(s) | 117 |
| BsiSI | CCGG | 1 cut(s) | 207 |
| BsmAI | GTCTC | 1 cut(s) | 114 |
| BsnI | GGCC | 1 cut(s) | 139 |
| BsoBI | CYCGRG | 1 cut(s) | 117 |
| Bsp1286I | GDGCHC | 1 cut(s) | 354 |
| BspACI | CCGC | 2 cut(s) | 49, 472 |
| BspANI | GGCC | 1 cut(s) | 139 |
| BspCNI | CTCAG | 3 cut(s) | 163, 175, 359 |
| BspMI | ACCTGC | 1 cut(s) | 114 |
| BsrBI | CCGCTC | 1 cut(s) | 49 |
| BssECI | CCNNGG | 2 cut(s) | 361, 461 |
| BssT1I | CCWWGG | 1 cut(s) | 461 |
| Bst2UI | CCWGG | 1 cut(s) | 363 |
| Bst6I | CTCTTC | 1 cut(s) | 418 |
| BstBAI | YACGTR | 1 cut(s) | 31 |
| BstDEI | CTNAG | 3 cut(s) | 171, 183, 346 |
| BstF5I | GGATG | 1 cut(s) | 111 |
| BstMAI | GTCTC | 1 cut(s) | 114 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 262 |
| BstNI | CCWGG | 1 cut(s) | 363 |
| BstSCI | CCNGG | 1 cut(s) | 361 |
| BstSLI | GKGCMC | 1 cut(s) | 354 |
| BstSNI | TACGTA | 1 cut(s) | 31 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 383 |
| BsuI | GTATCC | 1 cut(s) | 439 |
| BsuRI | GGCC | 1 cut(s) | 139 |
| BtsCI | GGATG | 1 cut(s) | 111 |
| BtsIMutI | CAGTG | 1 cut(s) | 354 |
| BveI | ACCTGC | 1 cut(s) | 114 |
| CviJI | RGCY | 5 cut(s) | 139, 199, 265, 300, 326 |
| CviKI_1 | RGCY | 5 cut(s) | 139, 199, 265, 300, 326 |
| DdeI | CTNAG | 3 cut(s) | 171, 183, 346 |
| Eam1104I | CTCTTC | 1 cut(s) | 418 |
| EarI | CTCTTC | 1 cut(s) | 418 |
| Eco105I | TACGTA | 1 cut(s) | 31 |
| Eco130I | CCWWGG | 1 cut(s) | 461 |
| Eco147I | AGGCCT | 1 cut(s) | 139 |
| Eco88I | CYCGRG | 1 cut(s) | 117 |
| EcoRII | CCWGG | 1 cut(s) | 361 |
| EcoT14I | CCWWGG | 1 cut(s) | 461 |
| ErhI | CCWWGG | 1 cut(s) | 461 |
| FaiI | YATR | 9 cut(s) | 70, 72, 150, 165, 189, 330, 417, 477, 482 |
| FauI | CCCGC | 1 cut(s) | 42 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| Fnu4HI | GCNGC | 1 cut(s) | 472 |
| FokI | GGATG | 1 cut(s) | 98 |
| Fsp4HI | GCNGC | 1 cut(s) | 472 |
| FspBI | CTAG | 1 cut(s) | 462 |
| GluI | GCNGC | 1 cut(s) | 472 |
| HaeIII | GGCC | 1 cut(s) | 139 |
| HapII | CCGG | 1 cut(s) | 207 |
| HincII | GTYRAC | 2 cut(s) | 6, 103 |
| HindII | GTYRAC | 2 cut(s) | 6, 103 |
| HinfI | GANTC | 1 cut(s) | 217 |
| HpaII | CCGG | 1 cut(s) | 207 |
| HphI | GGTGA | 2 cut(s) | 64, 261 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 28, 103 |
| Hpy188III | TCNNGA | 1 cut(s) | 119 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 28, 103 |
| HpyAV | CCTTC | 1 cut(s) | 276 |
| HpyCH4IV | ACGT | 1 cut(s) | 30 |
| HpyCH4V | TGCA | 4 cut(s) | 109, 158, 315, 332 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 262 |
| HpyF3I | CTNAG | 3 cut(s) | 171, 183, 346 |
| HpySE526I | ACGT | 1 cut(s) | 30 |
| MaeI | CTAG | 1 cut(s) | 462 |
| MaeII | ACGT | 1 cut(s) | 30 |
| MaeIII | GTNAC | 2 cut(s) | 214, 465 |
| MbiI | CCGCTC | 1 cut(s) | 49 |
| MboII | GAAGA | 1 cut(s) | 435 |
| MhlI | GDGCHC | 1 cut(s) | 354 |
| MluCI | AATT | 6 cut(s) | 17, 81, 289, 318, 406, 492 |
| MlyI | GAGTC | 1 cut(s) | 211 |
| MnlI | CCTC | 4 cut(s) | 87, 126, 166, 355 |
| MslI | CAYNNNNRTG | 1 cut(s) | 396 |
| MspI | CCGG | 1 cut(s) | 207 |
| MspR9I | CCNGG | 1 cut(s) | 363 |
| MvaI | CCWGG | 1 cut(s) | 363 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 262 |
| NmuCI | GTSAC | 2 cut(s) | 214, 465 |
| PaeR7I | CTCGAG | 1 cut(s) | 117 |
| PceI | AGGCCT | 1 cut(s) | 139 |
| PkrI | GCNGC | 1 cut(s) | 473 |
| PleI | GAGTC | 1 cut(s) | 211 |
| PpsI | GAGTC | 1 cut(s) | 211 |
| Ppu21I | YACGTR | 1 cut(s) | 31 |
| Psp6I | CCWGG | 1 cut(s) | 361 |
| PspGI | CCWGG | 1 cut(s) | 361 |
| RseI | CAYNNNNRTG | 1 cut(s) | 396 |
| SalI | GTCGAC | 1 cut(s) | 4 |
| SatI | GCNGC | 1 cut(s) | 472 |
| SchI | GAGTC | 1 cut(s) | 211 |
| ScrFI | CCNGG | 1 cut(s) | 363 |
| SduI | GDGCHC | 1 cut(s) | 354 |
| SetI | ASST | 8 cut(s) | 33, 37, 108, 148, 274, 302, 328, 467 |
| Sfr274I | CTCGAG | 1 cut(s) | 117 |
| SlaI | CTCGAG | 1 cut(s) | 117 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 396 |
| SmlI | CTYRAG | 2 cut(s) | 117, 236 |
| SmoI | CTYRAG | 2 cut(s) | 117, 236 |
| SnaBI | TACGTA | 1 cut(s) | 31 |
| Sse9I | AATT | 6 cut(s) | 17, 81, 289, 318, 406, 492 |
| SseBI | AGGCCT | 1 cut(s) | 139 |
| SsiI | CCGC | 2 cut(s) | 49, 472 |
| SspMI | CTAG | 1 cut(s) | 462 |
| StuI | AGGCCT | 1 cut(s) | 139 |
| StyD4I | CCNGG | 1 cut(s) | 361 |
| StyI | CCWWGG | 1 cut(s) | 461 |
| TaiI | ACGT | 1 cut(s) | 33 |
| TaqI | TCGA | 5 cut(s) | 5, 118, 229, 411, 421 |
| TasI | AATT | 6 cut(s) | 17, 81, 289, 318, 406, 492 |
| TauI | GCSGC | 1 cut(s) | 474 |
| TscAI | CASTG | 1 cut(s) | 354 |
| TseFI | GTSAC | 2 cut(s) | 214, 465 |
| Tsp45I | GTSAC | 2 cut(s) | 214, 465 |
| TspDTI | ATGAA | 1 cut(s) | 180 |
| TspRI | CASTG | 1 cut(s) | 354 |
| XapI | RAATTY | 3 cut(s) | 17, 289, 318 |
| XhoI | CTCGAG | 1 cut(s) | 117 |
| XmaJI | CCTAGG | 1 cut(s) | 461 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XspI | CTAG | 1 cut(s) | 462 |