Rroxscaffold_1G00027880

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000017
Physical Location & Seq
Reverse (-)
35463531 .. 35471308
7778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00027880.1

Sequence Viewer

Length: 1314 bp
ATGAGGGGCTCCAACTCTTCGAAGATAATGACGTTTCTCAACTCCCTTATTGCATTGCAATATCTTCCACGAGTTTACCCCATCTATGTACTGTTTAATGAAATAATTAACACGGAGAACATTGGCGATAGGAGAGACAGGAATCCAAAATGGTTATCAATCGTCGTCCATTCAAAATGGTCGTCGATTGTCGTCAATATGATTGGGTACATTCTTGCCAGCCATATATTCGGAGCATTTTGGTATTTTTTCTCCATCCAAACAGAGATACAGTGTTGGGAACATGCTTGTAGAATGGAAAATGGATGTGAATTTAGTACTTCATGTGTTCGAAATACACACAGAAATCTCCAATTTTTAAATGAGAAGTGCCCTATAAGTCCACCAAATAAACAAGTATTCGATTTTGGCGTATTTCAAGATGCTTTACAATCCGGCATGCCAAGATCAACCAATTTTTCACAAAAGTTCTTGCAGTGTTTATCATGGGGCATACGAAATATGAGTTCTTTTGGTTCAAACCTCAACGCTACCAGTGCAAATGGAGGGGAAAACCTGCTTGTGGTTGTCTTTTCAATATGTGGCTTGGGACTATTTATGTATCTCTTGGGGCATGTGCAGACATTTATGCAGAAAGTTAGCAAATCATGTACTATCCGACAGAAGATGAAAATGACTAATATACGATCCATACTAAACAAATATGGCCTGTCTGATGAGAATCATGAGATGGAGAGGAAAATCAAGCTTGCGGTAAAAGATAAACTTGAAGAAGATGACAGTCATATTGTGGAGGATATGTTTTCGATTCTTTCCTTAGGAGAAGCTGAAAATTTAGCTATGGAGATCAAATGCAATCTCTTCATGGATAAGCTCAAGAAAGTCGATGGGCTTAGAGATAAAGGGAAAGAAGTTTTGAAAAAAATCTGTGAGCATTTTGAGCCAATGATCTACAGTAGGGGATGCTACATTATTCGAGAGGGGGAGCCACTTGATATGATGTTCTTCGTCACACGGGGCAGTGTACTCACCTATGAGACTAATAATGGTGGATCAAATGGTTCTTCAGGTACTATCCAACTTGAGATAGAGAAAGATGGTTTGTATGGTAAAGAGCTTCTAACTTGGGCAGAAGGATGTTCTAGCAAATTGTCCAACTTACCGATCTCTACCATAACTGTCAAGTCCCACAACAAAGTTGAAGTGTTTGCTCTCCTCGCCACCGATTTACAGCATGTTGTGTCTAATTTTCCGAGTCAATTCAACATGGGCAATATCCTCAACATAGCTATCGATAATGAAATGGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

437

Amino Acids

49.63

Weight (kDa)

7.11

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 564
AciI CCGC 1 cut(s) 752
AclWI GGATC 2 cut(s) 681, 1060
AcsI RAATTY 2 cut(s) 311, 832
AcuI CTGAAG 1 cut(s) 1050
AfaI GTAC 6 cut(s) 90, 209, 319, 652, 1026, 1072
AfiI CCNNNNNNNGG 1 cut(s) 562
AgsI TTSAA 8 cut(s) 174, 419, 519, 576, 770, 919, 1202, 1264
AluBI AGCT 6 cut(s) 748, 827, 839, 874, 1117, 1289
AluI AGCT 6 cut(s) 748, 827, 839, 874, 1117, 1289
Alw26I GTCTC 2 cut(s) 129, 1031
AlwI GGATC 2 cut(s) 681, 1060
AoxI GGCC 1 cut(s) 706
ApoI RAATTY 2 cut(s) 311, 832
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AsuHPI GGTGA 1 cut(s) 1021
AsuII TTCGAA 2 cut(s) 20, 331
AxyI CCTNAGG 1 cut(s) 817
BaeGI GKGCMC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 11
BauI CACGAG 1 cut(s) 69
BccI CCATC 5 cut(s) 89, 263, 724, 881, 1091
BcoDI GTCTC 2 cut(s) 129, 1031
BfaI CTAG 1 cut(s) 1143
BfmI CTRYAG 1 cut(s) 952
BfuAI ACCTGC 1 cut(s) 564
BmcAI AGTACT 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 10, 987
BmsI GCATC 2 cut(s) 412, 953
Bpu14I TTCGAA 2 cut(s) 20, 331
BpuEI CTTGAG 2 cut(s) 860, 1103
Bsa29I ATCGAT 1 cut(s) 1293
BsaBI GATNNNNATC 1 cut(s) 720
BsaXI ACNNNNNCTCC 2 cut(s) 785, 815
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse1I ACTGG 1 cut(s) 534
Bse21I CCTNAGG 1 cut(s) 817
Bse3DI GCAATG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 720
BseCI ATCGAT 1 cut(s) 1293
BseGI GGATG 4 cut(s) 255, 311, 968, 1142
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMI GCAATG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 534
BseRI GAGGAG 1 cut(s) 1205
BseSI GKGCMC 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 638
BshFI GGCC 1 cut(s) 708
BshVI ATCGAT 1 cut(s) 1293
BsiSI CCGG 1 cut(s) 435
BslFI GGGAC 2 cut(s) 603, 1171
BslI CCNNNNNNNGG 1 cut(s) 562
BsmAI GTCTC 2 cut(s) 129, 1031
BsmFI GGGAC 2 cut(s) 603, 1171
BsnI GGCC 1 cut(s) 708
Bsp119I TTCGAA 2 cut(s) 20, 331
Bsp1286I GDGCHC 2 cut(s) 11, 374
Bsp143I GATC 6 cut(s) 446, 686, 846, 948, 1052, 1164
BspACI CCGC 1 cut(s) 752
BspANI GGCC 1 cut(s) 708
BspDI ATCGAT 1 cut(s) 1293
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 2 cut(s) 10, 987
BspMI ACCTGC 1 cut(s) 564
BspPI GGATC 2 cut(s) 681, 1060
BspT104I TTCGAA 2 cut(s) 20, 331
BsrDI GCAATG 1 cut(s) 53
BsrI ACTGG 1 cut(s) 534
BssMI GATC 6 cut(s) 446, 686, 846, 948, 1052, 1164
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
Bst4CI ACNGT 5 cut(s) 93, 273, 782, 956, 1180
Bst6I CTCTTC 2 cut(s) 22, 866
BstBI TTCGAA 2 cut(s) 20, 331
BstC8I GCNNGC 3 cut(s) 220, 440, 750
BstDEI CTNAG 2 cut(s) 817, 893
BstF5I GGATG 4 cut(s) 255, 311, 968, 1142
BstKTI GATC 6 cut(s) 449, 689, 849, 951, 1055, 1167
BstMAI GTCTC 2 cut(s) 129, 1031
BstMBI GATC 6 cut(s) 446, 686, 846, 948, 1052, 1164
BstMWI GCNNNNNNNGC 3 cut(s) 536, 940, 1217
BstNSI RCATGY 4 cut(s) 287, 442, 617, 1238
BstSFI CTRYAG 1 cut(s) 952
BstSLI GKGCMC 1 cut(s) 374
Bsu15I ATCGAT 1 cut(s) 1293
Bsu36I CCTNAGG 1 cut(s) 817
BsuRI GGCC 1 cut(s) 708
BsuTUI ATCGAT 1 cut(s) 1293
BtsCI GGATG 4 cut(s) 255, 311, 968, 1142
BtsI GCAGTG 2 cut(s) 482, 1027
BtsIMutI CAGTG 4 cut(s) 278, 482, 541, 1027
BveI ACCTGC 1 cut(s) 564
Cac8I GCNNGC 3 cut(s) 220, 440, 750
CciI TCATGA 1 cut(s) 724
ClaI ATCGAT 1 cut(s) 1293
Csp6I GTAC 6 cut(s) 89, 208, 318, 651, 1025, 1071
CviQI GTAC 6 cut(s) 89, 208, 318, 651, 1025, 1071
DdeI CTNAG 2 cut(s) 817, 893
DpnI GATC 6 cut(s) 448, 688, 848, 950, 1054, 1166
DpnII GATC 6 cut(s) 446, 686, 846, 948, 1052, 1164
DraI TTTAAA 1 cut(s) 360
Eam1104I CTCTTC 2 cut(s) 22, 866
EarI CTCTTC 2 cut(s) 22, 866
Eco24I GRGCYC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 1050
Eco81I CCTNAGG 1 cut(s) 817
EcoT38I GRGCYC 1 cut(s) 11
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 2 cut(s) 603, 1171
FokI GGATG 4 cut(s) 242, 318, 975, 1149
FriOI GRGCYC 1 cut(s) 11
FspBI CTAG 1 cut(s) 1143
HaeIII GGCC 1 cut(s) 708
HapII CCGG 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 4 cut(s) 142, 721, 808, 1255
HpaII CCGG 1 cut(s) 435
HphI GGTGA 1 cut(s) 1021
Hpy166II GTNNAC 4 cut(s) 76, 383, 1025, 1309
Hpy188I TCNGA 4 cut(s) 233, 659, 715, 1254
Hpy188III TCNNGA 4 cut(s) 419, 725, 877, 977
Hpy8I GTNNAC 4 cut(s) 76, 383, 1025, 1309
Hpy99I CGWCG 2 cut(s) 167, 187
HpyAV CCTTC 1 cut(s) 1127
HpyCH4III ACNGT 5 cut(s) 93, 273, 782, 956, 1180
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 7 cut(s) 53, 58, 475, 539, 619, 631, 855
HpyF10VI GCNNNNNNNGC 3 cut(s) 536, 940, 1217
HpyF3I CTNAG 2 cut(s) 817, 893
HpySE526I ACGT 1 cut(s) 32
Kzo9I GATC 6 cut(s) 446, 686, 846, 948, 1052, 1164
LmnI GCTCC 3 cut(s) 14, 233, 985
LpnPI CCDG 7 cut(s) 124, 232, 448, 547, 569, 722, 1053
LweI GCATC 2 cut(s) 412, 953
MaeI CTAG 1 cut(s) 1143
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 1009
MalI GATC 6 cut(s) 448, 688, 848, 950, 1054, 1166
MboI GATC 6 cut(s) 446, 686, 846, 948, 1052, 1164
MboII GAAGA 9 cut(s) 9, 34, 56, 676, 782, 785, 853, 997, 1056
MhlI GDGCHC 2 cut(s) 11, 374
MluCI AATT 8 cut(s) 105, 311, 353, 454, 832, 1148, 1246, 1259
MlyI GAGTC 1 cut(s) 1264
MmeI TCCRAC 4 cut(s) 36, 682, 1102, 1179
MnlI CCTC 7 cut(s) 533, 539, 729, 787, 973, 1226, 1289
MseI TTAA 3 cut(s) 96, 108, 359
MspI CCGG 1 cut(s) 435
MwoI GCNNNNNNNGC 3 cut(s) 536, 940, 1217
NdeII GATC 6 cut(s) 446, 686, 846, 948, 1052, 1164
NlaIV GGNNCC 2 cut(s) 10, 987
NmuCI GTSAC 1 cut(s) 1009
NspI RCATGY 4 cut(s) 287, 442, 617, 1238
NspV TTCGAA 2 cut(s) 20, 331
PaeI GCATGC 1 cut(s) 442
PagI TCATGA 1 cut(s) 724
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PfeI GAWTC 3 cut(s) 142, 721, 808
PleI GAGTC 1 cut(s) 1263
PpsI GAGTC 1 cut(s) 1263
PspN4I GGNNCC 2 cut(s) 10, 987
RsaI GTAC 6 cut(s) 90, 209, 319, 652, 1026, 1072
RsaNI GTAC 6 cut(s) 89, 208, 318, 651, 1025, 1071
SaqAI TTAA 3 cut(s) 96, 108, 359
Sau3AI GATC 6 cut(s) 446, 686, 846, 948, 1052, 1164
ScaI AGTACT 1 cut(s) 319
SchI GAGTC 1 cut(s) 1264
SduI GDGCHC 2 cut(s) 11, 374
SfaNI GCATC 2 cut(s) 412, 953
SfcI CTRYAG 1 cut(s) 952
SfuI TTCGAA 2 cut(s) 20, 331
SmlI CTYRAG 2 cut(s) 875, 1082
SmoI CTYRAG 2 cut(s) 875, 1082
SphI GCATGC 1 cut(s) 442
Sse9I AATT 8 cut(s) 105, 311, 353, 454, 832, 1148, 1246, 1259
SsiI CCGC 1 cut(s) 752
SspMI CTAG 1 cut(s) 1143
TaaI ACNGT 5 cut(s) 93, 273, 782, 956, 1180
TaiI ACGT 1 cut(s) 35
TaqI TCGA 8 cut(s) 20, 185, 331, 402, 806, 885, 976, 1293
TasI AATT 8 cut(s) 105, 311, 353, 454, 832, 1148, 1246, 1259
TatI WGTACW 4 cut(s) 88, 317, 650, 1024
TfiI GAWTC 3 cut(s) 142, 721, 808
Tru1I TTAA 3 cut(s) 96, 108, 359
Tru9I TTAA 3 cut(s) 96, 108, 359
TscAI CASTG 4 cut(s) 278, 482, 541, 1027
TseFI GTSAC 1 cut(s) 1009
Tsp45I GTSAC 1 cut(s) 1009
TspDTI ATGAA 5 cut(s) 114, 312, 683, 853, 1314
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 4 cut(s) 278, 482, 541, 1027
XapI RAATTY 2 cut(s) 311, 832
XceI RCATGY 4 cut(s) 287, 442, 617, 1238
XspI CTAG 1 cut(s) 1143
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.