FvH4_7g13280

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000017
Physical Location & Seq
Forward (+)
11947304 .. 11951832
4529 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13280.t5

Sequence Viewer

Length: 1893 bp
ATGAACAACAAGCAAGCCAATGATGCGGTAGCAATTGAGCTACGAAATACTGATTGGAATTTGGAGTTGGAACCCAGAGATGGAGGACATAAGACTACAAGTACTACAAAAGAGCTAGAAGAAACTCTTAAAAAGCATGATGAGCCAAGAAATAGATGGAATACAATCTTTACAATATCATGTGCAATTGCAATCTTCATTGATCCTTTGTACTGTTACGCTCCTGTGATCCACGGCAAGTGCTTAGAACTGCACCAAACTTTGATGTGGACGTATATTGGCTTACGATCAGCCGTCGATGTCTTTTACGCAATCGACTTGGTTACTTTGTTGCTGGGAATCGGTAACAAGCTTGGTGCCTTCTGGACTAGAAGTAACCAAAAGACAGTTGTTAGTTCCAAAGAGGAAAAGAAGGGTCTTGTTAGTTGGTGTAAGAAGACATTTGGGACTTTCTGCACTAGAAGTAGCCAAAAGACAATGGTTCTATATCTCATTTTGGTTTCTCTTCCCCTTCCAGAGGGACTGTTACTCTCTTCCATATGCTCGGAATTACTGTTATATAAATGGGATCCTACTTATGCTCTTATAATCACAACTCCAATCCAATACTCCTTACGGATTTATCACATGTACGTATCCTTGAGGCTGCGACGTCCTATCTTGAAGTCTGAAATGGGAAAATGGCTTAAAGCTGTAATGGATTACCTTCCCTTCGTCCTTGCTTCTCATCTATTTGGAGCTTTGTGGTACCGTCTTGCTGTTCAGCGACAGATAGATTGTTGGAAGTCACATTGTGAAGAGCTCCTCCTGCTAGAAACTAAGCAATGTAAATCTATAAGCAGTCGACTTTTTTTCTGTAAAACGATGTCCTCGTCGAAAACCAGCGATCTCTCTAAATGGGATGAATTATGTCATCCCGTTAAAGAAGCAAATCCAGAAGTCTTTGATTTCGGTATATATCTTCATGCTCTTCAGTCTAATGTGACAAGTTCAACGAATGCCATAAAAAGAATGTCGCAATCTTTTTGGTGGGCGCTACGAAATCTGAGTTCCTTTGGTTCAAACCTCCAGACTAGTCTGTATACAATGGAAATCTTCTTGTCTGTGTTGATATCTATAAGTGGCATGGCGTTATTTTTAGTATATCTGAATGCAAGGGTGCAGGAGTCACAAAAGATACTAGACGAGTTTAAATCAAAAAAGAAGACGCAGTTGCTGAAACCAGATGTAGATCTGTGGTTATATAGAAATAACATTCAACAAGAGGATTTGAAGAGAGCCATCATGGAAAACATACACGAACTTGGGGAAAACAAAGATATCGATTTGCAAAACATGCTCTTTATTCTTCCCGTAAATGATAAAAAAAGAATCATCCAGTTTCTCTGCTTGGATTCACTAAAGAAAGTGCCTGTGCTTGAAAATATTCATGAAAATGTTCTGATAGCAATCTGTCAGCATCTTAAGCCAGTGACATACACTGAAGACAGTTATATTGTTCAAGAGGGGAGACCACTTGGAAAGATGATCTTCATCATGCAAGGCCTTGCTTGGACTTACACAACCAGTAACATAATCGGCGAAACGATAAAGAAAGGCGATTTTTACGGAGAAGAAGTTTTAACTTGGGCGTTCCAATCCCTTTCCTTTTCTGGTTTACCCATCTCAACTCGAACTGTTATATCCCAAGGAAAAATCGAAGCCTTTGCTATCAGAGCCGACGACTTGAAGAGTGTTGTATATAAGTTTTGGTGGCATTTTAGGAAAGAGGTAGGTGTTTCACAGTTGGAGCTCTGGGAGCATTTGGCAGCGTCTTCCATACAAACTGCTTGGCGCCTCCGTAATGCAAAGGCTAAACCCCCAACTAAGTGGGATAGGATTCCTTATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

631

Amino Acids

72.76

Weight (kDa)

8.95

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 587
AatII GACGTC 1 cut(s) 655
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 3 cut(s) 356, 747, 1833
AccI GTMKAC 2 cut(s) 844, 1082
AciI CCGC 1 cut(s) 26
AclWI GGATC 4 cut(s) 197, 223, 563, 576
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 2 cut(s) 956, 1503
AcyI GRCGYC 2 cut(s) 652, 1834
AdeI CACNNNGTG 1 cut(s) 794
AfaI GTAC 4 cut(s) 103, 212, 632, 749
AfiI CCNNNNNNNGG 2 cut(s) 80, 517
AflII CTTAAG 1 cut(s) 1463
AflIII ACRYGT 1 cut(s) 627
AgsI TTSAA 8 cut(s) 664, 993, 1062, 1259, 1273, 1421, 1502, 1729
AhlI ACTAGT 1 cut(s) 1073
AjuI GAANNNNNNNTTGG 4 cut(s) 37, 50, 69, 82
AluBI AGCT 7 cut(s) 40, 115, 352, 692, 740, 802, 1792
AluI AGCT 7 cut(s) 40, 115, 352, 692, 740, 802, 1792
Alw21I GWGCWC 2 cut(s) 804, 1794
Alw26I GTCTC 1 cut(s) 1504
AlwI GGATC 4 cut(s) 197, 223, 563, 576
AlwNI CAGNNNCTG 1 cut(s) 1216
AoxI GGCC 1 cut(s) 1543
ApeKI GCWGC 2 cut(s) 646, 1808
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 2 cut(s) 1425, 1437
Asp718I GGTACC 1 cut(s) 747
AspLEI GCGC 2 cut(s) 1036, 1836
BamHI GGATCC 1 cut(s) 568
BanI GGYRCC 3 cut(s) 356, 747, 1833
BanII GRGCYC 2 cut(s) 804, 1794
BbsI GAAGAC 4 cut(s) 443, 1211, 1491, 1806
Bbv12I GWGCWC 2 cut(s) 804, 1794
BbvI GCAGC 2 cut(s) 633, 1820
BccI CCATC 4 cut(s) 74, 150, 1289, 1670
BceAI ACGGC 2 cut(s) 250, 278
BcgI CGANNNNNNTGC 2 cut(s) 1688, 1722
BciVI GTATCC 1 cut(s) 646
BcoDI GTCTC 1 cut(s) 1504
BcuI ACTAGT 1 cut(s) 1073
BfaI CTAG 6 cut(s) 116, 369, 459, 812, 1074, 1181
BfoI RGCGCY 2 cut(s) 1037, 1837
BfrI CTTAAG 1 cut(s) 1463
BfuI GTATCC 1 cut(s) 646
BglII AGATCT 1 cut(s) 1231
BisI GCNGC 2 cut(s) 647, 1809
BlsI GCNGC 2 cut(s) 648, 1810
BmcAI AGTACT 1 cut(s) 103
BmiI GGNNCC 5 cut(s) 72, 358, 570, 749, 1835
BmsI GCATC 2 cut(s) 13, 1468
BpiI GAAGAC 4 cut(s) 443, 1211, 1491, 1806
BpmI CTGGAG 1 cut(s) 1052
BpuEI CTTGAG 1 cut(s) 661
Bsa29I ATCGAT 1 cut(s) 1323
BsaAI YACGTR 1 cut(s) 634
BsaBI GATNNNNATC 3 cut(s) 1230, 1448, 1532
BsaHI GRCGYC 2 cut(s) 652, 1834
BsaI GGTCTC 1 cut(s) 1504
BsaJI CCNNGG 2 cut(s) 232, 1687
BsaXI ACNNNNNCTCC 2 cut(s) 1602, 1632
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 517
Bse1I ACTGG 3 cut(s) 1378, 1469, 1566
Bse3DI GCAATG 1 cut(s) 830
Bse8I GATNNNNATC 3 cut(s) 1230, 1448, 1532
BseCI ATCGAT 1 cut(s) 1323
BseDI CCNNGG 2 cut(s) 232, 1687
BseGI GGATG 3 cut(s) 907, 913, 1374
BseJI GATNNNNATC 3 cut(s) 1230, 1448, 1532
BseLI CCNNNNNNNGG 2 cut(s) 80, 517
BseMI GCAATG 1 cut(s) 830
BseMII CTCAG 1 cut(s) 1037
BseNI ACTGG 3 cut(s) 1378, 1469, 1566
BseRI GAGGAG 1 cut(s) 794
BseXI GCAGC 2 cut(s) 633, 1820
BseYI CCCAGC 1 cut(s) 334
BsgI GTGCAG 3 cut(s) 236, 439, 1181
BshFI GGCC 1 cut(s) 1545
BshNI GGYRCC 3 cut(s) 356, 747, 1833
BshVI ATCGAT 1 cut(s) 1323
BsiHKAI GWGCWC 2 cut(s) 804, 1794
BslFI GGGAC 2 cut(s) 460, 534
BslI CCNNNNNNNGG 2 cut(s) 80, 517
BsmAI GTCTC 1 cut(s) 1504
BsmFI GGGAC 2 cut(s) 460, 534
BsmI GAATGC 2 cut(s) 1003, 1156
BsnI GGCC 1 cut(s) 1545
Bso31I GGTCTC 1 cut(s) 1504
Bsp1286I GDGCHC 2 cut(s) 804, 1794
Bsp143I GATC 7 cut(s) 202, 228, 287, 568, 886, 1231, 1527
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 1545
BspCNI CTCAG 1 cut(s) 1038
BspDI ATCGAT 1 cut(s) 1323
BspHI TCATGA 1 cut(s) 1429
BspLI GGNNCC 5 cut(s) 72, 358, 570, 749, 1835
BspPI GGATC 4 cut(s) 197, 223, 563, 576
BspQI GCTCTTC 2 cut(s) 792, 975
BspT107I GGYRCC 3 cut(s) 356, 747, 1833
BspTI CTTAAG 1 cut(s) 1463
BspTNI GGTCTC 1 cut(s) 1504
BsrDI GCAATG 1 cut(s) 830
BsrI ACTGG 3 cut(s) 1378, 1469, 1566
BssECI CCNNGG 2 cut(s) 232, 1687
BssMI GATC 7 cut(s) 202, 228, 287, 568, 886, 1231, 1527
BssNAI GTATAC 1 cut(s) 1083
BssNI GRCGYC 2 cut(s) 652, 1834
BssT1I CCWWGG 1 cut(s) 1687
Bst1107I GTATAC 1 cut(s) 1083
Bst4CI ACNGT 8 cut(s) 215, 388, 525, 555, 752, 1490, 1678, 1785
Bst6I CTCTTC 6 cut(s) 510, 538, 792, 975, 1268, 1724
BstACI GRCGYC 2 cut(s) 652, 1834
BstAFI CTTAAG 1 cut(s) 1463
BstAPI GCANNNNNTGC 1 cut(s) 1336
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 4 cut(s) 244, 819, 1046, 1866
BstDSI CCRYGG 1 cut(s) 232
BstENI CCTNNNNNAGG 1 cut(s) 515
BstF5I GGATG 3 cut(s) 907, 913, 1374
BstH2I RGCGCY 2 cut(s) 1037, 1837
BstHHI GCGC 2 cut(s) 1036, 1836
BstKTI GATC 7 cut(s) 205, 231, 290, 571, 889, 1234, 1530
BstMAI GTCTC 1 cut(s) 1504
BstMBI GATC 7 cut(s) 202, 228, 287, 568, 886, 1231, 1527
BstMWI GCNNNNNNNGC 7 cut(s) 23, 142, 808, 1336, 1465, 1715, 1798
BstNSI RCATGY 2 cut(s) 631, 1339
BstSNI TACGTA 1 cut(s) 634
BstV1I GCAGC 2 cut(s) 633, 1820
BstV2I GAAGAC 4 cut(s) 443, 1211, 1491, 1806
BstX2I RGATCY 2 cut(s) 568, 1231
BstXI CCANNNNNNTGG 1 cut(s) 1869
BstYI RGATCY 2 cut(s) 568, 1231
BstZ17I GTATAC 1 cut(s) 1083
Bsu15I ATCGAT 1 cut(s) 1323
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 1 cut(s) 1545
BsuTUI ATCGAT 1 cut(s) 1323
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 3 cut(s) 907, 913, 1374
BtsIMutI CAGTG 2 cut(s) 1476, 1479
Cac8I GCNNGC 1 cut(s) 15
CaiI CAGNNNCTG 1 cut(s) 1216
CciI TCATGA 1 cut(s) 1429
CfoI GCGC 2 cut(s) 1036, 1836
ClaI ATCGAT 1 cut(s) 1323
CseI GACGC 2 cut(s) 1216, 1800
Csp6I GTAC 4 cut(s) 102, 211, 631, 748
CviAII CATG 9 cut(s) 137, 180, 628, 965, 1126, 1285, 1336, 1430, 1537
CviQI GTAC 4 cut(s) 102, 211, 631, 748
DdeI CTNAG 4 cut(s) 244, 819, 1046, 1866
DinI GGCGCC 1 cut(s) 1835
DpnI GATC 7 cut(s) 204, 230, 289, 570, 888, 1233, 1529
DpnII GATC 7 cut(s) 202, 228, 287, 568, 886, 1231, 1527
DraI TTTAAA 1 cut(s) 1192
DraIII CACNNNGTG 1 cut(s) 794
Eam1104I CTCTTC 6 cut(s) 510, 538, 792, 975, 1268, 1724
EarI CTCTTC 6 cut(s) 510, 538, 792, 975, 1268, 1724
Ecl136II GAGCTC 2 cut(s) 802, 1792
Eco105I TACGTA 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 1687
Eco147I AGGCCT 1 cut(s) 1545
Eco24I GRGCYC 2 cut(s) 804, 1794
Eco31I GGTCTC 1 cut(s) 1504
Eco32I GATATC 2 cut(s) 1113, 1321
Eco53kI GAGCTC 2 cut(s) 802, 1792
Eco57I CTGAAG 2 cut(s) 956, 1503
EcoICRI GAGCTC 2 cut(s) 802, 1792
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoRV GATATC 2 cut(s) 1113, 1321
EcoT14I CCWWGG 1 cut(s) 1687
EcoT38I GRGCYC 2 cut(s) 804, 1794
EgeI GGCGCC 1 cut(s) 1835
EheI GGCGCC 1 cut(s) 1835
ErhI CCWWGG 1 cut(s) 1687
FaeI CATG 9 cut(s) 140, 183, 631, 968, 1129, 1288, 1339, 1433, 1540
FalI AAGNNNNNCTT 4 cut(s) 111, 143, 1514, 1546
FaqI GGGAC 2 cut(s) 460, 534
FatI CATG 9 cut(s) 136, 179, 627, 964, 1125, 1284, 1335, 1429, 1536
FauNDI CATATG 1 cut(s) 539
FblI GTMKAC 2 cut(s) 844, 1082
Fnu4HI GCNGC 2 cut(s) 647, 1809
FokI GGATG 3 cut(s) 900, 914, 1361
FriOI GRGCYC 2 cut(s) 804, 1794
Fsp4HI GCNGC 2 cut(s) 647, 1809
FspBI CTAG 6 cut(s) 116, 369, 459, 812, 1074, 1181
GlaI GCGC 2 cut(s) 1035, 1835
GluI GCNGC 2 cut(s) 647, 1809
GsaI CCCAGC 1 cut(s) 338
GsuI CTGGAG 1 cut(s) 1052
HaeII RGCGCY 2 cut(s) 1037, 1837
HaeIII GGCC 1 cut(s) 1545
HgaI GACGC 2 cut(s) 1216, 1800
HhaI GCGC 2 cut(s) 1036, 1836
Hin1I GRCGYC 2 cut(s) 652, 1834
Hin1II CATG 9 cut(s) 140, 183, 631, 968, 1129, 1288, 1339, 1433, 1540
Hin6I GCGC 2 cut(s) 1034, 1834
HinP1I GCGC 2 cut(s) 1034, 1834
HincII GTYRAC 1 cut(s) 845
HindII GTYRAC 1 cut(s) 845
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 5 cut(s) 339, 1166, 1371, 1394, 1879
Hpy166II GTNNAC 4 cut(s) 270, 845, 1083, 1658
Hpy188I TCNGA 6 cut(s) 547, 670, 1047, 1149, 1443, 1715
Hpy188III TCNNGA 7 cut(s) 364, 515, 661, 935, 1069, 1430, 1502
Hpy8I GTNNAC 4 cut(s) 270, 845, 1083, 1658
Hpy99I CGWCG 4 cut(s) 299, 654, 877, 1724
HpyAV CCTTC 5 cut(s) 370, 406, 521, 716, 721
HpyCH4III ACNGT 8 cut(s) 215, 388, 525, 555, 752, 1490, 1678, 1785
HpyCH4IV ACGT 3 cut(s) 272, 633, 652
HpyCH4V TGCA 9 cut(s) 185, 191, 253, 456, 1154, 1162, 1330, 1540, 1847
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 142, 808, 1336, 1465, 1715, 1798
HpyF3I CTNAG 4 cut(s) 244, 819, 1046, 1866
HpySE526I ACGT 3 cut(s) 272, 633, 652
Hsp92I GRCGYC 2 cut(s) 652, 1834
Hsp92II CATG 9 cut(s) 140, 183, 631, 968, 1129, 1288, 1339, 1433, 1540
HspAI GCGC 2 cut(s) 1034, 1834
KasI GGCGCC 1 cut(s) 1833
KpnI GGTACC 1 cut(s) 751
Kzo9I GATC 7 cut(s) 202, 228, 287, 568, 886, 1231, 1527
LguI GCTCTTC 2 cut(s) 792, 975
LmnI GCTCC 5 cut(s) 226, 737, 807, 1789, 1798
Lsp1109I GCAGC 2 cut(s) 633, 1820
LweI GCATC 2 cut(s) 13, 1468
MaeI CTAG 6 cut(s) 116, 369, 459, 812, 1074, 1181
MaeII ACGT 3 cut(s) 272, 633, 652
MalI GATC 7 cut(s) 204, 230, 289, 570, 888, 1233, 1529
MboI GATC 7 cut(s) 202, 228, 287, 568, 886, 1231, 1527
MfeI CAATTG 2 cut(s) 33, 186
MflI RGATCY 2 cut(s) 568, 1231
MhlI GDGCHC 2 cut(s) 804, 1794
MluCI AATT 5 cut(s) 33, 58, 186, 548, 905
Mly113I GGCGCC 1 cut(s) 1834
MlyI GAGTC 1 cut(s) 1175
MmeI TCCRAC 3 cut(s) 48, 761, 1767
MroXI GAANNNNTTC 2 cut(s) 1425, 1437
MseI TTAA 6 cut(s) 129, 687, 921, 1191, 1464, 1622
MslI CAYNNNNRTG 1 cut(s) 1434
MspCI CTTAAG 1 cut(s) 1463
MunI CAATTG 2 cut(s) 33, 186
Mva1269I GAATGC 2 cut(s) 1003, 1156
MwoI GCNNNNNNNGC 7 cut(s) 23, 142, 808, 1336, 1465, 1715, 1798
NarI GGCGCC 1 cut(s) 1834
NdeI CATATG 1 cut(s) 539
NdeII GATC 7 cut(s) 202, 228, 287, 568, 886, 1231, 1527
NlaIII CATG 9 cut(s) 140, 183, 631, 968, 1129, 1288, 1339, 1433, 1540
NlaIV GGNNCC 5 cut(s) 72, 358, 570, 749, 1835
NmuCI GTSAC 4 cut(s) 786, 982, 1167, 1471
NspI RCATGY 2 cut(s) 631, 1339
PagI TCATGA 1 cut(s) 1429
PceI AGGCCT 1 cut(s) 1545
PciI ACATGT 1 cut(s) 627
PciSI GCTCTTC 2 cut(s) 792, 975
PcsI WCGNNNNNNNCGW 1 cut(s) 869
PctI GAATGC 2 cut(s) 1003, 1156
PdmI GAANNNNTTC 2 cut(s) 1425, 1437
PfeI GAWTC 4 cut(s) 339, 1371, 1394, 1879
PkrI GCNGC 2 cut(s) 648, 1810
PleI GAGTC 1 cut(s) 1174
PluTI GGCGCC 1 cut(s) 1837
PpsI GAGTC 1 cut(s) 1174
Ppu21I YACGTR 1 cut(s) 634
PscI ACATGT 1 cut(s) 627
PsiI TTATAA 1 cut(s) 587
Psp124BI GAGCTC 2 cut(s) 804, 1794
PspFI CCCAGC 1 cut(s) 334
PspN4I GGNNCC 5 cut(s) 72, 358, 570, 749, 1835
PstNI CAGNNNCTG 1 cut(s) 1216
PsuI RGATCY 2 cut(s) 568, 1231
RsaI GTAC 4 cut(s) 103, 212, 632, 749
RsaNI GTAC 4 cut(s) 102, 211, 631, 748
RseI CAYNNNNRTG 1 cut(s) 1434
SacI GAGCTC 2 cut(s) 804, 1794
SalI GTCGAC 1 cut(s) 843
SapI GCTCTTC 2 cut(s) 792, 975
SaqAI TTAA 6 cut(s) 129, 687, 921, 1191, 1464, 1622
SatI GCNGC 2 cut(s) 647, 1809
Sau3AI GATC 7 cut(s) 202, 228, 287, 568, 886, 1231, 1527
ScaI AGTACT 1 cut(s) 103
SchI GAGTC 1 cut(s) 1175
SduI GDGCHC 2 cut(s) 804, 1794
SfaNI GCATC 2 cut(s) 13, 1468
SfoI GGCGCC 1 cut(s) 1835
SmiMI CAYNNNNRTG 1 cut(s) 1434
SmlI CTYRAG 2 cut(s) 640, 1463
SmoI CTYRAG 2 cut(s) 640, 1463
SnaBI TACGTA 1 cut(s) 634
SpeI ACTAGT 1 cut(s) 1073
Sse9I AATT 5 cut(s) 33, 58, 186, 548, 905
SseBI AGGCCT 1 cut(s) 1545
SsiI CCGC 1 cut(s) 26
SspDI GGCGCC 1 cut(s) 1833
SspI AATATT 1 cut(s) 1426
SspMI CTAG 6 cut(s) 116, 369, 459, 812, 1074, 1181
SstI GAGCTC 2 cut(s) 804, 1794
StuI AGGCCT 1 cut(s) 1545
StyI CCWWGG 1 cut(s) 1687
TaaI ACNGT 8 cut(s) 215, 388, 525, 555, 752, 1490, 1678, 1785
TaiI ACGT 3 cut(s) 275, 636, 655
TaqI TCGA 7 cut(s) 297, 315, 844, 875, 1323, 1672, 1698
TasI AATT 5 cut(s) 33, 58, 186, 548, 905
TatI WGTACW 2 cut(s) 101, 210
TfiI GAWTC 4 cut(s) 339, 1371, 1394, 1879
Tru1I TTAA 6 cut(s) 129, 687, 921, 1191, 1464, 1622
Tru9I TTAA 6 cut(s) 129, 687, 921, 1191, 1464, 1622
TscAI CASTG 2 cut(s) 1476, 1486
TseFI GTSAC 4 cut(s) 786, 982, 1167, 1471
TseI GCWGC 2 cut(s) 646, 1808
Tsp45I GTSAC 4 cut(s) 786, 982, 1167, 1471
TspDTI ATGAA 7 cut(s) 17, 187, 918, 953, 1418, 1446, 1522
TspGWI ACGGA 3 cut(s) 631, 1623, 1829
TspRI CASTG 2 cut(s) 1476, 1486
Vha464I CTTAAG 1 cut(s) 1463
XagI CCTNNNNNAGG 1 cut(s) 515
XapI RAATTY 1 cut(s) 58
XceI RCATGY 2 cut(s) 631, 1339
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
XmiI GTMKAC 2 cut(s) 844, 1082
XmnI GAANNNNTTC 2 cut(s) 1425, 1437
XspI CTAG 6 cut(s) 116, 369, 459, 812, 1074, 1181
ZraI GACGTC 1 cut(s) 653
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.