Rh1AG327200

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
56012489 .. 56022824
10336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG327200.1

Sequence Viewer

Length: 1626 bp
ATGATACATTGCTGGCAATCTGCATGCCACTCGCTAAATTATCATAATGAATGTAAATCTAGTGCGTTACTGTGTCACAATCAACGTACTATTGGAAGAACCACATTGGTATATGATTTGTGTCCGATAAATCCACAAAATGTAACACTCTTTGATTTTGGCATATTTCTCAATGTCCTTCAACCTGGAATAGCTGGATCAACAAATTATTTACAAAAGTTAACAAATTGTTTGTTGTGGGCCCTGCGAAATTTGAGTTCATTTGGTTCGAACCTCGAGCCTAGTATCAATCCGTGGGAAAACCTTTTTGCGACTTCTGTTTCTATCACTGGCTTGCTCCTGTTTCTATATCTCCTTGGAAAATTACAGATATATATGGCATGGGAAACAGCAATGAAGCAAGAAAGATGGACAACAGAAGTTCGAGAGAAGAAGGAAGTAAAACGACTGATTAAATTATTTGAACCGAAGATAGACTCATGGTTAGATAAACATGACCTGGATCCCAGCCGTTTCAAGTCAGTGGTCGAGACAGAGCTGGTAAATCTAGCATTGAAAAGCAACAAGGAAGATGTTGATGAGAATGAAATCTTTCCCAATCTTTCTCGTGATCTTCGAGATCAGATACAAATTGAAAAGGATGCAAAAGAGATAGATTCGTGGCTACAAAAAAACTATCTAGATCCTCAGCATTTCAAGGCCGACATCGTGGAAGCAGTAAAAGAAAAACGTAAACAAAATGGACCATTTGACTTGGATCCGAACAATATCCTCCCAATTGTTCCTGACAATATCCGAAATACAATCATGGAAAGTATATCTAATAAGGCGTGGGCTATGCTGGAGCAGGTACTACTTCTTCAAAATGTGAATGAATCAGGATTGAAAAGAATCTCTAAGAAATTTATAGCTCAGAAGTATACACAGTCAAGAACTATTATTAAAGAGAAGGAATCGCTTAAAATGATCTTCATCGTTGACGGAGTTGCAAGTATTGGAAAAAGATATTGTCTTACTCGTTGGGAGCTAAAAGCAGGAGAATTCTATGGGGAAGAGCTCCTGCGTTCGCCATCAGCCAAAGCAAAGGAGTTCGTTAAGGCCAAAACTGATGTTGAAGCCCTGATTCTTGACGCCGAAGCTTTGCAGAGTGTGGTATCTGAGTACAAGGTGCACATCAGCAAACAGATCCCCGTCCCGTCAAAATATGAGATCAACCATTTGTCCATGCTAAAGAATGTGCCAAAACTAGAAAATATTGATGAAAAAGTTCTGGAGGCAATCAGTAAGGTCCTTAGGACACAGAGCTATGGCAAAGGGTCGCAAATTATTAAAGAGAAGGACGAACTGGACAAGATGTTTTTGGTCACGCGTGGAACAGTAGGCGTAAGAAGGTCCGGTAAATTGAGGAGAGAATTGTACAAGGTTGGAGAACTCTACGGAGAAGAACTTCTGGATTGGGCGTTGGATGTGTTGGATACGGGAACGGCTTCTCCTCTCCCCTTATCGGCTGGTACTGCTACGACCAACACCACTGTTGACGTCCTCATTCTCAACGCCACGGATTTGGAGGAGGAGTTAGCCGCTACAAGATCACCATCCCCCAATGATTCTGAGTCGGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

541

Amino Acids

61.58

Weight (kDa)

5.93

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1542
Acc36I ACCTGC 1 cut(s) 838
AccI GTMKAC 1 cut(s) 920
AccII CGCG 1 cut(s) 1369
AciI CCGC 1 cut(s) 1581
AclWI GGATC 7 cut(s) 205, 497, 510, 677, 752, 765, 1180
AcsI RAATTY 3 cut(s) 250, 902, 1040
AcyI GRCGYC 2 cut(s) 1131, 1539
AfaI GTAC 5 cut(s) 88, 852, 1163, 1418, 1513
AfiI CCNNNNNNNGG 1 cut(s) 1504
AflIII ACRYGT 1 cut(s) 1367
AgsI TTSAA 9 cut(s) 182, 464, 517, 556, 635, 697, 863, 886, 1115
AjnI CCWGG 2 cut(s) 184, 498
AloI GAACNNNNNNTCC 2 cut(s) 1474, 1506
AluBI AGCT 7 cut(s) 194, 538, 911, 1027, 1057, 1139, 1305
AluI AGCT 7 cut(s) 194, 538, 911, 1027, 1057, 1139, 1305
Alw21I GWGCWC 2 cut(s) 1059, 1173
Alw26I GTCTC 1 cut(s) 524
Alw44I GTGCAC 1 cut(s) 1169
AlwI GGATC 7 cut(s) 205, 497, 510, 677, 752, 765, 1180
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 3 cut(s) 240, 699, 1098
ApaI GGGCCC 1 cut(s) 244
ApaLI GTGCAC 1 cut(s) 1169
ApoI RAATTY 3 cut(s) 250, 902, 1040
Asp700I GAANNNNTTC 4 cut(s) 591, 1266, 1446, 1486
AspS9I GGNCC 5 cut(s) 240, 241, 743, 1288, 1392
AsuHPI GGTGA 1 cut(s) 1584
AsuII TTCGAA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 3 cut(s) 743, 1288, 1392
AxyI CCTNAGG 1 cut(s) 1292
BaeGI GKGCMC 2 cut(s) 244, 1173
BamHI GGATCC 2 cut(s) 502, 757
BanII GRGCYC 2 cut(s) 244, 1059
BarI GAAGNNNNNNTAC 2 cut(s) 843, 875
BauI CACGAG 1 cut(s) 606
Bbv12I GWGCWC 2 cut(s) 1059, 1173
BbvCI CCTCAGC 1 cut(s) 687
BccI CCATC 3 cut(s) 402, 1078, 1603
BceAI ACGGC 2 cut(s) 495, 1500
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BciT130I CCWGG 2 cut(s) 186, 500
BciVI GTATCC 1 cut(s) 1468
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 5 cut(s) 60, 282, 548, 680, 1247
BfuAI ACCTGC 1 cut(s) 838
BfuI GTATCC 1 cut(s) 1468
BisI GCNGC 1 cut(s) 1581
BlsI GCNGC 1 cut(s) 1582
Bme1390I CCNGG 2 cut(s) 186, 500
Bme18I GGWCC 3 cut(s) 743, 1288, 1392
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 5 cut(s) 240, 241, 743, 1288, 1392
BmiI GGNNCC 3 cut(s) 242, 504, 759
BmrFI CCNGG 2 cut(s) 186, 500
BmsI GCATC 1 cut(s) 631
BpmI CTGGAG 2 cut(s) 863, 1292
Bpu10I CCTNAGC 1 cut(s) 687
Bpu14I TTCGAA 1 cut(s) 269
BsaBI GATNNNNATC 2 cut(s) 971, 1594
BsaHI GRCGYC 2 cut(s) 1131, 1539
BsaJI CCNNGG 3 cut(s) 293, 355, 1557
BsaWI WCCGGW 1 cut(s) 1394
BsaXI ACNNNNNCTCC 4 cut(s) 1474, 1504, 1559, 1589
Bsc4I CCNNNNNNNGG 1 cut(s) 1504
Bse1I ACTGG 2 cut(s) 334, 1350
Bse21I CCTNAGG 1 cut(s) 1292
Bse3DI GCAATG 2 cut(s) 7, 399
Bse8I GATNNNNATC 2 cut(s) 971, 1594
BseBI CCWGG 2 cut(s) 186, 500
BseDI CCNNGG 3 cut(s) 293, 355, 1557
BseGI GGATG 3 cut(s) 646, 1471, 1595
BseJI GATNNNNATC 2 cut(s) 971, 1594
BseLI CCNNNNNNNGG 1 cut(s) 1504
BseMI GCAATG 2 cut(s) 7, 399
BseMII CTCAG 4 cut(s) 701, 926, 1149, 1602
BseNI ACTGG 2 cut(s) 334, 1350
BseRI GAGGAG 4 cut(s) 1420, 1482, 1583, 1586
BseSI GKGCMC 2 cut(s) 244, 1173
BseYI CCCAGC 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 1369
BshFI GGCC 3 cut(s) 242, 701, 1100
BsiHKAI GWGCWC 2 cut(s) 1059, 1173
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 1 cut(s) 1395
BslFI GGGAC 1 cut(s) 1178
BslI CCNNNNNNNGG 1 cut(s) 1504
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 1178
BsnI GGCC 3 cut(s) 242, 701, 1100
BsoBI CYCGRG 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 269
Bsp120I GGGCCC 1 cut(s) 240
Bsp1286I GDGCHC 3 cut(s) 244, 1059, 1173
Bsp1407I TGTACA 1 cut(s) 1416
BspACI CCGC 1 cut(s) 1581
BspANI GGCC 3 cut(s) 242, 701, 1100
BspCNI CTCAG 4 cut(s) 700, 925, 1150, 1603
BspFNI CGCG 1 cut(s) 1369
BspLI GGNNCC 3 cut(s) 242, 504, 759
BspMI ACCTGC 1 cut(s) 838
BspPI GGATC 7 cut(s) 205, 497, 510, 677, 752, 765, 1180
BspQI GCTCTTC 1 cut(s) 1047
BspT104I TTCGAA 1 cut(s) 269
BsrDI GCAATG 2 cut(s) 7, 399
BsrGI TGTACA 1 cut(s) 1416
BsrI ACTGG 2 cut(s) 334, 1350
BssECI CCNNGG 3 cut(s) 293, 355, 1557
BssNAI GTATAC 1 cut(s) 921
BssNI GRCGYC 2 cut(s) 1131, 1539
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 355
Bst1107I GTATAC 1 cut(s) 921
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 186, 500
Bst4CI ACNGT 4 cut(s) 72, 927, 1378, 1534
Bst6I CTCTTC 1 cut(s) 1047
BstACI GRCGYC 2 cut(s) 1131, 1539
BstAUI TGTACA 1 cut(s) 1416
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 3 cut(s) 14, 25, 335
BstDEI CTNAG 6 cut(s) 687, 897, 912, 1158, 1292, 1611
BstDSI CCRYGG 2 cut(s) 293, 1557
BstF5I GGATG 3 cut(s) 646, 1471, 1595
BstFNI CGCG 1 cut(s) 1369
BstMAI GTCTC 1 cut(s) 524
BstMWI GCNNNNNNNGC 1 cut(s) 1514
BstNI CCWGG 2 cut(s) 186, 500
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 184, 498
BstSLI GKGCMC 2 cut(s) 244, 1173
BstUI CGCG 1 cut(s) 1369
BstX2I RGATCY 4 cut(s) 502, 682, 757, 1185
BstXI CCANNNNNNTGG 1 cut(s) 1564
BstYI RGATCY 4 cut(s) 502, 682, 757, 1185
BstZ17I GTATAC 1 cut(s) 921
Bsu36I CCTNAGG 1 cut(s) 1292
BsuI GTATCC 1 cut(s) 1468
BsuRI GGCC 3 cut(s) 242, 701, 1100
BtgI CCRYGG 2 cut(s) 293, 1557
BtsCI GGATG 3 cut(s) 646, 1471, 1595
BtsIMutI CAGTG 3 cut(s) 327, 528, 1530
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 3 cut(s) 14, 25, 335
Cfr13I GGNCC 5 cut(s) 240, 241, 743, 1288, 1392
CseI GACGC 1 cut(s) 1139
Csp6I GTAC 5 cut(s) 87, 851, 1162, 1417, 1512
CviAII CATG 6 cut(s) 24, 381, 480, 494, 808, 1225
CviQI GTAC 5 cut(s) 87, 851, 1162, 1417, 1512
DdeI CTNAG 6 cut(s) 687, 897, 912, 1158, 1292, 1611
Eam1104I CTCTTC 1 cut(s) 1047
EarI CTCTTC 1 cut(s) 1047
Ecl136II GAGCTC 1 cut(s) 1057
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 2 cut(s) 244, 1059
Eco47I GGWCC 3 cut(s) 743, 1288, 1392
Eco53kI GAGCTC 1 cut(s) 1057
Eco81I CCTNAGG 1 cut(s) 1292
Eco88I CYCGRG 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 1057
EcoO109I RGGNCCY 2 cut(s) 241, 1288
EcoRI GAATTC 1 cut(s) 1040
EcoRII CCWGG 2 cut(s) 184, 498
EcoT14I CCWWGG 1 cut(s) 355
EcoT38I GRGCYC 2 cut(s) 244, 1059
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 6 cut(s) 27, 384, 483, 497, 811, 1228
FaqI GGGAC 1 cut(s) 1178
FatI CATG 6 cut(s) 23, 380, 479, 493, 807, 1224
FblI GTMKAC 1 cut(s) 920
Fnu4HI GCNGC 1 cut(s) 1581
FokI GGATG 3 cut(s) 653, 1478, 1582
FriOI GRGCYC 2 cut(s) 244, 1059
Fsp4HI GCNGC 1 cut(s) 1581
FspBI CTAG 5 cut(s) 60, 282, 548, 680, 1247
GluI GCNGC 1 cut(s) 1581
GsaI CCCAGC 1 cut(s) 510
GsuI CTGGAG 2 cut(s) 863, 1292
HaeIII GGCC 3 cut(s) 242, 701, 1100
HapII CCGG 1 cut(s) 1395
HgaI GACGC 1 cut(s) 1139
Hin1I GRCGYC 2 cut(s) 1131, 1539
Hin1II CATG 6 cut(s) 27, 384, 483, 497, 811, 1228
HincII GTYRAC 3 cut(s) 222, 979, 1537
HindII GTYRAC 3 cut(s) 222, 979, 1537
HindIII AAGCTT 1 cut(s) 1137
HinfI GANTC 8 cut(s) 476, 656, 875, 891, 953, 1123, 1607, 1613
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 1 cut(s) 1395
HphI GGTGA 1 cut(s) 1584
Hpy166II GTNNAC 6 cut(s) 222, 734, 921, 979, 1171, 1537
Hpy188I TCNGA 8 cut(s) 126, 624, 762, 797, 915, 1159, 1612, 1618
Hpy8I GTNNAC 6 cut(s) 222, 734, 921, 979, 1171, 1537
HpyAV CCTTC 5 cut(s) 188, 427, 943, 1330, 1383
HpyCH4III ACNGT 4 cut(s) 72, 927, 1378, 1534
HpyCH4IV ACGT 3 cut(s) 85, 730, 1539
HpyCH4V TGCA 5 cut(s) 23, 644, 989, 1144, 1171
HpyF10VI GCNNNNNNNGC 1 cut(s) 1514
HpyF3I CTNAG 6 cut(s) 687, 897, 912, 1158, 1292, 1611
HpySE526I ACGT 3 cut(s) 85, 730, 1539
Hsp92I GRCGYC 2 cut(s) 1131, 1539
Hsp92II CATG 6 cut(s) 27, 384, 483, 497, 811, 1228
KspAI GTTAAC 1 cut(s) 222
LguI GCTCTTC 1 cut(s) 1047
LmnI GCTCC 4 cut(s) 342, 844, 1024, 1062
LweI GCATC 1 cut(s) 631
MaeI CTAG 5 cut(s) 60, 282, 548, 680, 1247
MaeII ACGT 3 cut(s) 85, 730, 1539
MaeIII GTNAC 4 cut(s) 66, 74, 142, 1363
MboII GAAGA 9 cut(s) 108, 442, 481, 581, 605, 851, 961, 1064, 1454
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 4 cut(s) 502, 682, 757, 1185
MhlI GDGCHC 3 cut(s) 244, 1059, 1173
MluI ACGCGT 1 cut(s) 1367
MlyI GAGTC 2 cut(s) 470, 1622
MmeI TCCRAC 4 cut(s) 1405, 1443, 1452, 1596
MroXI GAANNNNTTC 4 cut(s) 591, 1266, 1446, 1486
MseI TTAA 7 cut(s) 221, 453, 942, 960, 1095, 1329, 1624
MspI CCGG 1 cut(s) 1395
MspR9I CCNGG 2 cut(s) 186, 500
MunI CAATTG 1 cut(s) 777
MvaI CCWGG 2 cut(s) 186, 500
MvnI CGCG 1 cut(s) 1369
MwoI GCNNNNNNNGC 1 cut(s) 1514
NlaIII CATG 6 cut(s) 27, 384, 483, 497, 811, 1228
NlaIV GGNNCC 3 cut(s) 242, 504, 759
NmuCI GTSAC 2 cut(s) 74, 1363
NspI RCATGY 1 cut(s) 27
NspV TTCGAA 1 cut(s) 269
PaeI GCATGC 1 cut(s) 27
PaeR7I CTCGAG 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 1047
PcsI WCGNNNNNNNCGW 1 cut(s) 613
PdmI GAANNNNTTC 4 cut(s) 591, 1266, 1446, 1486
PfeI GAWTC 6 cut(s) 656, 875, 891, 953, 1123, 1607
PkrI GCNGC 1 cut(s) 1582
PleI GAGTC 2 cut(s) 470, 1621
PpsI GAGTC 2 cut(s) 470, 1621
PpuMI RGGWCCY 1 cut(s) 1288
Psp124BI GAGCTC 1 cut(s) 1059
Psp5II RGGWCCY 1 cut(s) 1288
Psp6I CCWGG 2 cut(s) 184, 498
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 2 cut(s) 184, 498
PspN4I GGNNCC 3 cut(s) 242, 504, 759
PspOMI GGGCCC 1 cut(s) 240
PspPI GGNCC 5 cut(s) 240, 241, 743, 1288, 1392
PspPPI RGGWCCY 1 cut(s) 1288
PspXI VCTCGAGB 1 cut(s) 275
PsuI RGATCY 4 cut(s) 502, 682, 757, 1185
RsaI GTAC 5 cut(s) 88, 852, 1163, 1418, 1513
RsaNI GTAC 5 cut(s) 87, 851, 1162, 1417, 1512
SacI GAGCTC 1 cut(s) 1059
SapI GCTCTTC 1 cut(s) 1047
SaqAI TTAA 7 cut(s) 221, 453, 942, 960, 1095, 1329, 1624
SatI GCNGC 1 cut(s) 1581
Sau96I GGNCC 5 cut(s) 240, 241, 743, 1288, 1392
SchI GAGTC 2 cut(s) 470, 1622
ScrFI CCNGG 2 cut(s) 186, 500
SduI GDGCHC 3 cut(s) 244, 1059, 1173
SfaNI GCATC 1 cut(s) 631
Sfr274I CTCGAG 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 269
SinI GGWCC 3 cut(s) 743, 1288, 1392
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SphI GCATGC 1 cut(s) 27
SsiI CCGC 1 cut(s) 1581
SspI AATATT 1 cut(s) 1255
SspMI CTAG 5 cut(s) 60, 282, 548, 680, 1247
SstI GAGCTC 1 cut(s) 1059
StyD4I CCNGG 2 cut(s) 184, 498
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 4 cut(s) 72, 927, 1378, 1534
TaiI ACGT 3 cut(s) 88, 733, 1542
TaqI TCGA 5 cut(s) 269, 276, 424, 528, 616
TatI WGTACW 2 cut(s) 1161, 1416
TauI GCSGC 1 cut(s) 1583
TfiI GAWTC 6 cut(s) 656, 875, 891, 953, 1123, 1607
Tru1I TTAA 7 cut(s) 221, 453, 942, 960, 1095, 1329, 1624
Tru9I TTAA 7 cut(s) 221, 453, 942, 960, 1095, 1329, 1624
TscAI CASTG 3 cut(s) 334, 528, 1537
TseFI GTSAC 2 cut(s) 74, 1363
Tsp45I GTSAC 2 cut(s) 74, 1363
TspDTI ATGAA 7 cut(s) 63, 249, 410, 600, 888, 961, 1275
TspGWI ACGGA 4 cut(s) 282, 996, 1452, 1574
TspRI CASTG 3 cut(s) 334, 528, 1537
VneI GTGCAC 1 cut(s) 1169
VpaK11BI GGWCC 3 cut(s) 743, 1288, 1392
XapI RAATTY 3 cut(s) 250, 902, 1040
XbaI TCTAGA 1 cut(s) 679
XceI RCATGY 1 cut(s) 27
XhoI CTCGAG 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 920
XmnI GAANNNNTTC 4 cut(s) 591, 1266, 1446, 1486
XspI CTAG 5 cut(s) 60, 282, 548, 680, 1247
ZraI GACGTC 1 cut(s) 1540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.