Rw0G021350

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00981
Physical Location & Seq
Reverse (-)
7202 .. 11962
4761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G021350.1

Sequence Viewer

Length: 1986 bp
ATGGCTAACCCTGAAATAGCTTTAAATGTAGAGCACACGGAAGAAGAGAAATCTCAGAGATCGGTTACTGAGGGAGGAGATACAAGAACAACTGGAGGATGGTTCTCCTTTAACAAAATTTTCAATCCAAAAGGGAAGTTCCTTACGATGTGGAACAACATATTTGTAGCATCTTGTGTGTTTGCTGTCTCCTTTGATCCTTTGTTCTTCTACACTCCAGTCATTAACGACGAGAAGAAGTGTGTATATTTTGACACAAGGTTGAAGGCCATAGCCCTTGTCTTGAGGTTACTCACAGATCACTTCTATATTGGGGACATTATTATCCGAATTTTGATTAGTATACCTCAAACCAAGTCATCCAAGGCTTCTGAGGTGACGAAAACACAAGCCGAAGCTCATAATTCCAAAGGGAAAATATCAGTTGAGGATGTTTTCAAAATAGCTAAAGGGGCTTGGGCGAAAGCTAATAGATCGTACATCCTGATTGACATTTTAGCTATTCTTCCCATACCCCAGGTGGGAATGTTCGTTTTCTTTTCGAAGATGAAGAGCCCGGGATATTCGATAGAATGGAGGCTTTTCGACATTCTTATTTTGTTCCAATTTGTCCCACGCGCTCTTCCTGTTTACTTATTGTGCAAAGAACGTCAAAAAACTCTTAATAAAGCAAACATGTGGACTAAAGGTGTTTTCAATTTCTTTCTATACATCCTTGCAAGTCATGTAATCGGAGCTCTTTGGTACTTTTTTGCCATCCAACGAGAGATGGATTGTTGGCATTATGTTTGCCAACGTCACAAGGGATGTCAACCTAGTACCTTTAGTTGTAGTGAACGACGAAATGGATTGAGAACTATCCAATCCGACGACATTCTTCGATCGTTAGACAAAGAATGTCGTCCGATAAACCTACAGGACGAAAGGAAAGGAGAGCTCTTTAAATTTGGTATATTTGCTGATGCGCTTGACTCCGACCTAGTGCAGTCGACTGATTTTCCTAAAAAATTCTTGAACTGTTTCTGGTGGGGGCTCTCTCTTGGTCAAAACCTCCATACAAGTACCTATGCATGGGAAAACCTCTTTGCCGTGTTTATTTCCATTGTAGGCATGCTACTGTTTATATATCTCATCGGAAGTCTGCAGACATATTTGCAGTTTGCAACTGCAAGATCAGAGAAGATTAGACGGAAGATGAAAACGAAAAATTTAGAGGTTGATTTGTGGTTATCTAGAAAGGGACTGCCTAGCAATTTGAAGGCAGTGATAATGCAATTCATACAACAAAAACTTGAACAGAACAATGATGTTCAAGTTGAGAACATCCTCTCTGTTCTTCCTTCAGCACATACTAAATATATCATGCGCTATCTTCGGTTGGCTACACTCAAGAAAGTGCCAATGCTTCAAACTATGGGGGTAAGACTGCTGAAAGCAATCTGTGAGCATCTCGAGCCGGTGGACTATACTGAGGACAGTTGCATTATTCAAGAGGGAGAGCCACTCCATAAGATGATTTTCATCACACATGGCACAGTACATACCTACAGGACCAATGGGAAAGGTGGAAAAATTGGTTCCAGGTTTCTTGAGAAAGGCAATTTCTATGGATCAGAAGAGCTTCTCAATTGGGTATCAAAGTTTAGCTCTTCCAACTACTTACCAATCTCGACCAGAATGGTTAAGCCTGTCACGAAAGTCGAAGTCTTTGAGCTGAGCGCGGACGACTTGAAGAGTGTAGCCATCAAGTACTGGTGGAATTTCACCAAGAACAAGGATCCAAAGGATTTCGACCTGTCTCTGTTAGAGGAGTATGCAGTATCTTCCATAGAAAAAGAAATCCGTCGCCGCAGGCAACCAAAAAAGAAGCCTACACTTAAGTTGGCTACTAATCAGGGTAGTGCTAGCCAGAAGTTCCTAAAGGTCATCAGTAGGGCCATGAGGGATCAGCTACCTGCACCAGTTTGTGCTCTAGGTGGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

661

Amino Acids

76.07

Weight (kDa)

9.45

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 51 - 392 5.4e-06 Ion transport protein
cNMP_binding PF00027 487 - 579 5.8e-07 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1963, 1971
AccI GTMKAC 2 cut(s) 343, 989
AccII CGCG 2 cut(s) 618, 1721
AciI CCGC 2 cut(s) 1721, 1849
AclWI GGATC 5 cut(s) 191, 1618, 1772, 1785, 1953
AcsI RAATTY 6 cut(s) 117, 330, 944, 1007, 1207, 1759
AcuI CTGAAG 1 cut(s) 1326
AfaI GTAC 6 cut(s) 479, 746, 820, 1063, 1539, 1751
AfiI CCNNNNNNNGG 2 cut(s) 521, 1071
AflII CTTAAG 1 cut(s) 1877
AflIII ACRYGT 1 cut(s) 675
AjnI CCWGG 2 cut(s) 516, 1580
Alw21I GWGCWC 4 cut(s) 36, 739, 939, 1972
Alw26I GTCTC 2 cut(s) 193, 1803
AlwI GGATC 5 cut(s) 191, 1618, 1772, 1785, 1953
Ama87I CYCGRG 2 cut(s) 556, 1451
AoxI GGCC 2 cut(s) 267, 1935
ApoI RAATTY 6 cut(s) 117, 330, 944, 1007, 1207, 1759
Asp700I GAANNNNTTC 2 cut(s) 1019, 1620
AspLEI GCGC 4 cut(s) 620, 967, 1368, 1721
AspS9I GGNCC 2 cut(s) 1551, 1935
AsuC2I CCSGG 2 cut(s) 557, 558
AsuHPI GGTGA 2 cut(s) 388, 1756
AsuII TTCGAA 1 cut(s) 542
AsuNHI GCTAGC 1 cut(s) 1904
AvaI CYCGRG 2 cut(s) 556, 1451
AvaII GGWCC 1 cut(s) 1551
BamHI GGATCC 1 cut(s) 1777
BanII GRGCYC 4 cut(s) 557, 739, 939, 1035
Bbv12I GWGCWC 4 cut(s) 36, 739, 939, 1972
BccI CCATC 4 cut(s) 93, 763, 764, 1751
BceAI ACGGC 1 cut(s) 1073
BciT130I CCWGG 2 cut(s) 518, 1582
BcnI CCSGG 2 cut(s) 557, 558
BcoDI GTCTC 2 cut(s) 193, 1803
BfaI CTAG 6 cut(s) 816, 980, 1233, 1248, 1905, 1973
BfmI CTRYAG 3 cut(s) 914, 1142, 1546
BfrI CTTAAG 1 cut(s) 1877
BfuAI ACCTGC 2 cut(s) 1963, 1971
BisI GCNGC 1 cut(s) 1849
BlpI GCTNAGC 1 cut(s) 1715
BlsI GCNGC 1 cut(s) 1850
BmcAI AGTACT 1 cut(s) 1751
Bme1390I CCNGG 4 cut(s) 518, 557, 558, 1582
Bme18I GGWCC 1 cut(s) 1551
BmeT110I CYCGRG 2 cut(s) 556, 1451
BmgT120I GGNCC 2 cut(s) 1551, 1935
BmiI GGNNCC 2 cut(s) 1579, 1779
BmrFI CCNGG 4 cut(s) 518, 557, 558, 1582
BmsI GCATC 3 cut(s) 179, 952, 1456
BmtI GCTAGC 1 cut(s) 1908
BplI GAGNNNNNCTC 2 cut(s) 1488, 1520
BpmI CTGGAG 2 cut(s) 114, 201
Bpu1102I GCTNAGC 1 cut(s) 1715
Bpu14I TTCGAA 1 cut(s) 542
BpuEI CTTGAG 3 cut(s) 304, 1373, 1610
BpuMI CCSGG 2 cut(s) 557, 558
BsaBI GATNNNNATC 1 cut(s) 1520
BsaJI CCNNGG 3 cut(s) 363, 516, 556
Bsc4I CCNNNNNNNGG 2 cut(s) 521, 1071
Bse118I RCCGGY 1 cut(s) 1456
Bse1I ACTGG 4 cut(s) 97, 218, 1757, 1961
Bse8I GATNNNNATC 1 cut(s) 1520
BseBI CCWGG 2 cut(s) 518, 1582
BseDI CCNNGG 3 cut(s) 363, 516, 556
BseGI GGATG 8 cut(s) 104, 359, 436, 480, 711, 756, 812, 1323
BseJI GATNNNNATC 1 cut(s) 1520
BseLI CCNNNNNNNGG 2 cut(s) 521, 1071
BseMII CTCAG 5 cut(s) 60, 68, 363, 1461, 1706
BseNI ACTGG 4 cut(s) 97, 218, 1757, 1961
BseRI GAGGAG 2 cut(s) 90, 1823
BsgI GTGCAG 2 cut(s) 1004, 1941
Bsh1236I CGCG 2 cut(s) 618, 1721
Bsh1285I CGRYCG 1 cut(s) 884
BshFI GGCC 2 cut(s) 269, 1937
BsiEI CGRYCG 1 cut(s) 884
BsiHKAI GWGCWC 4 cut(s) 36, 739, 939, 1972
BsiHKCI CYCGRG 2 cut(s) 556, 1451
BsiSI CCGG 2 cut(s) 557, 1457
BslFI GGGAC 3 cut(s) 329, 596, 1254
BslI CCNNNNNNNGG 2 cut(s) 521, 1071
BsmAI GTCTC 2 cut(s) 193, 1803
BsmFI GGGAC 3 cut(s) 329, 596, 1254
BsnI GGCC 2 cut(s) 269, 1937
BsoBI CYCGRG 2 cut(s) 556, 1451
Bsp119I TTCGAA 1 cut(s) 542
Bsp1286I GDGCHC 6 cut(s) 36, 557, 739, 939, 1035, 1972
Bsp143I GATC 9 cut(s) 59, 196, 298, 473, 881, 1172, 1610, 1777, 1945
Bsp1720I GCTNAGC 1 cut(s) 1715
BspACI CCGC 2 cut(s) 1721, 1849
BspANI GGCC 2 cut(s) 269, 1937
BspCNI CTCAG 5 cut(s) 61, 67, 364, 1462, 1707
BspFNI CGCG 2 cut(s) 618, 1721
BspLI GGNNCC 2 cut(s) 1579, 1779
BspMAI CTGCAG 1 cut(s) 1146
BspMI ACCTGC 2 cut(s) 1963, 1971
BspOI GCTAGC 1 cut(s) 1908
BspPI GGATC 5 cut(s) 191, 1618, 1772, 1785, 1953
BspQI GCTCTTC 4 cut(s) 545, 627, 1611, 1654
BspT104I TTCGAA 1 cut(s) 542
BspTI CTTAAG 1 cut(s) 1877
BsrFI RCCGGY 1 cut(s) 1456
BsrI ACTGG 4 cut(s) 97, 218, 1757, 1961
BssAI RCCGGY 1 cut(s) 1456
BssECI CCNNGG 3 cut(s) 363, 516, 556
BssMI GATC 9 cut(s) 59, 196, 298, 473, 881, 1172, 1610, 1777, 1945
BssNAI GTATAC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 363
Bst1107I GTATAC 1 cut(s) 344
Bst2UI CCWGG 2 cut(s) 518, 1582
Bst4CI ACNGT 4 cut(s) 1019, 1119, 1478, 1537
Bst6I CTCTTC 6 cut(s) 39, 545, 627, 1611, 1654, 1727
BstAFI CTTAAG 1 cut(s) 1877
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 1112, 1853, 1906
BstDEI CTNAG 5 cut(s) 54, 69, 372, 1470, 1715
BstF5I GGATG 8 cut(s) 104, 359, 436, 480, 711, 756, 812, 1323
BstFNI CGCG 2 cut(s) 618, 1721
BstHHI GCGC 4 cut(s) 620, 967, 1368, 1721
BstKTI GATC 9 cut(s) 62, 199, 301, 476, 884, 1175, 1613, 1780, 1948
BstMAI GTCTC 2 cut(s) 193, 1803
BstMBI GATC 9 cut(s) 59, 196, 298, 473, 881, 1172, 1610, 1777, 1945
BstMCI CGRYCG 1 cut(s) 884
BstMWI GCNNNNNNNGC 2 cut(s) 452, 1453
BstNI CCWGG 2 cut(s) 518, 1582
BstNSI RCATGY 2 cut(s) 679, 1114
BstSCI CCNGG 4 cut(s) 516, 555, 556, 1580
BstSFI CTRYAG 3 cut(s) 914, 1142, 1546
BstUI CGCG 2 cut(s) 618, 1721
BstX2I RGATCY 1 cut(s) 1777
BstYI RGATCY 1 cut(s) 1777
BstZ17I GTATAC 1 cut(s) 344
BsuRI GGCC 2 cut(s) 269, 1937
BtsCI GGATG 8 cut(s) 104, 359, 436, 480, 711, 756, 812, 1323
BtsI GCAGTG 1 cut(s) 1269
BtsIMutI CAGTG 1 cut(s) 1269
BveI ACCTGC 2 cut(s) 1963, 1971
Cac8I GCNNGC 3 cut(s) 1112, 1853, 1906
CfoI GCGC 4 cut(s) 620, 967, 1368, 1721
Cfr10I RCCGGY 1 cut(s) 1456
Cfr13I GGNCC 2 cut(s) 1551, 1935
Cfr9I CCCGGG 1 cut(s) 556
Csp6I GTAC 6 cut(s) 478, 745, 819, 1062, 1538, 1750
CviAII CATG 7 cut(s) 676, 725, 1071, 1111, 1363, 1529, 1939
CviQI GTAC 6 cut(s) 478, 745, 819, 1062, 1538, 1750
DdeI CTNAG 5 cut(s) 54, 69, 372, 1470, 1715
DpnI GATC 9 cut(s) 61, 198, 300, 475, 883, 1174, 1612, 1779, 1947
DpnII GATC 9 cut(s) 59, 196, 298, 473, 881, 1172, 1610, 1777, 1945
DraI TTTAAA 2 cut(s) 24, 943
Eam1104I CTCTTC 6 cut(s) 39, 545, 627, 1611, 1654, 1727
EarI CTCTTC 6 cut(s) 39, 545, 627, 1611, 1654, 1727
Ecl136II GAGCTC 2 cut(s) 737, 937
Eco130I CCWWGG 1 cut(s) 363
Eco24I GRGCYC 4 cut(s) 557, 739, 939, 1035
Eco47I GGWCC 1 cut(s) 1551
Eco53kI GAGCTC 2 cut(s) 737, 937
Eco57I CTGAAG 1 cut(s) 1326
Eco88I CYCGRG 2 cut(s) 556, 1451
EcoICRI GAGCTC 2 cut(s) 737, 937
EcoRII CCWGG 2 cut(s) 516, 1580
EcoT14I CCWWGG 1 cut(s) 363
EcoT22I ATGCAT 1 cut(s) 1072
EcoT38I GRGCYC 4 cut(s) 557, 739, 939, 1035
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 7 cut(s) 679, 728, 1074, 1114, 1366, 1532, 1942
FaqI GGGAC 3 cut(s) 329, 596, 1254
FatI CATG 7 cut(s) 675, 724, 1070, 1110, 1362, 1528, 1938
FblI GTMKAC 2 cut(s) 343, 989
Fnu4HI GCNGC 1 cut(s) 1849
FokI GGATG 8 cut(s) 111, 346, 443, 467, 698, 743, 819, 1310
FriOI GRGCYC 4 cut(s) 557, 739, 939, 1035
Fsp4HI GCNGC 1 cut(s) 1849
FspBI CTAG 6 cut(s) 816, 980, 1233, 1248, 1905, 1973
GlaI GCGC 4 cut(s) 619, 966, 1367, 1720
GluI GCNGC 1 cut(s) 1849
GsuI CTGGAG 2 cut(s) 114, 201
HaeIII GGCC 2 cut(s) 269, 1937
HapII CCGG 2 cut(s) 557, 1457
HhaI GCGC 4 cut(s) 620, 967, 1368, 1721
Hin1II CATG 7 cut(s) 679, 728, 1074, 1114, 1366, 1532, 1942
Hin6I GCGC 4 cut(s) 618, 965, 1366, 1719
HinP1I GCGC 4 cut(s) 618, 965, 1366, 1719
HincII GTYRAC 2 cut(s) 812, 990
HindII GTYRAC 2 cut(s) 812, 990
HinfI GANTC 1 cut(s) 971
HpaII CCGG 2 cut(s) 557, 1457
HphI GGTGA 2 cut(s) 388, 1756
Hpy166II GTNNAC 7 cut(s) 344, 631, 681, 812, 836, 990, 1462
Hpy8I GTNNAC 7 cut(s) 344, 631, 681, 812, 836, 990, 1462
Hpy99I CGWCG 4 cut(s) 233, 843, 872, 1848
HpyAV CCTTC 3 cut(s) 259, 1252, 1350
HpyCH4III ACNGT 4 cut(s) 1019, 1119, 1478, 1537
HpyCH4IV ACGT 2 cut(s) 649, 796
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 1453
HpyF3I CTNAG 5 cut(s) 54, 69, 372, 1470, 1715
HpySE526I ACGT 2 cut(s) 649, 796
Hsp92II CATG 7 cut(s) 679, 728, 1074, 1114, 1366, 1532, 1942
HspAI GCGC 4 cut(s) 618, 965, 1366, 1719
Kzo9I GATC 9 cut(s) 59, 196, 298, 473, 881, 1172, 1610, 1777, 1945
LguI GCTCTTC 4 cut(s) 545, 627, 1611, 1654
LmnI GCTCC 1 cut(s) 734
LweI GCATC 3 cut(s) 179, 952, 1456
MaeI CTAG 6 cut(s) 816, 980, 1233, 1248, 1905, 1973
MaeII ACGT 2 cut(s) 649, 796
MaeIII GTNAC 5 cut(s) 64, 288, 376, 797, 1690
MalI GATC 9 cut(s) 61, 198, 300, 475, 883, 1174, 1612, 1779, 1947
MboI GATC 9 cut(s) 59, 196, 298, 473, 881, 1172, 1610, 1777, 1945
MfeI CAATTG 1 cut(s) 1627
MflI RGATCY 1 cut(s) 1777
MhlI GDGCHC 6 cut(s) 36, 557, 739, 939, 1035, 1972
MlyI GAGTC 1 cut(s) 965
MmeI TCCRAC 4 cut(s) 784, 891, 999, 1677
Mph1103I ATGCAT 1 cut(s) 1072
MroXI GAANNNNTTC 2 cut(s) 1019, 1620
MseI TTAA 7 cut(s) 23, 111, 225, 663, 942, 1683, 1878
MspCI CTTAAG 1 cut(s) 1877
MspI CCGG 2 cut(s) 557, 1457
MspR9I CCNGG 4 cut(s) 518, 557, 558, 1582
MunI CAATTG 1 cut(s) 1627
MvaI CCWGG 2 cut(s) 518, 1582
MvnI CGCG 2 cut(s) 618, 1721
MwoI GCNNNNNNNGC 2 cut(s) 452, 1453
NciI CCSGG 2 cut(s) 557, 558
NdeII GATC 9 cut(s) 59, 196, 298, 473, 881, 1172, 1610, 1777, 1945
NheI GCTAGC 1 cut(s) 1904
NlaIII CATG 7 cut(s) 679, 728, 1074, 1114, 1366, 1532, 1942
NlaIV GGNNCC 2 cut(s) 1579, 1779
NmuCI GTSAC 3 cut(s) 376, 797, 1690
NsiI ATGCAT 1 cut(s) 1072
NspI RCATGY 2 cut(s) 679, 1114
NspV TTCGAA 1 cut(s) 542
PaeI GCATGC 1 cut(s) 1114
PaeR7I CTCGAG 1 cut(s) 1451
PciI ACATGT 1 cut(s) 675
PciSI GCTCTTC 4 cut(s) 545, 627, 1611, 1654
PdmI GAANNNNTTC 2 cut(s) 1019, 1620
PkrI GCNGC 1 cut(s) 1850
Ple19I CGATCG 1 cut(s) 884
PleI GAGTC 1 cut(s) 965
PpsI GAGTC 1 cut(s) 965
PscI ACATGT 1 cut(s) 675
Psp124BI GAGCTC 2 cut(s) 739, 939
Psp6I CCWGG 2 cut(s) 516, 1580
PspGI CCWGG 2 cut(s) 516, 1580
PspN4I GGNNCC 2 cut(s) 1579, 1779
PspPI GGNCC 2 cut(s) 1551, 1935
PstI CTGCAG 1 cut(s) 1146
PsuI RGATCY 1 cut(s) 1777
PvuI CGATCG 1 cut(s) 884
RsaI GTAC 6 cut(s) 479, 746, 820, 1063, 1539, 1751
RsaNI GTAC 6 cut(s) 478, 745, 819, 1062, 1538, 1750
SacI GAGCTC 2 cut(s) 739, 939
SalI GTCGAC 1 cut(s) 988
SapI GCTCTTC 4 cut(s) 545, 627, 1611, 1654
SaqAI TTAA 7 cut(s) 23, 111, 225, 663, 942, 1683, 1878
SatI GCNGC 1 cut(s) 1849
Sau3AI GATC 9 cut(s) 59, 196, 298, 473, 881, 1172, 1610, 1777, 1945
Sau96I GGNCC 2 cut(s) 1551, 1935
ScaI AGTACT 1 cut(s) 1751
SchI GAGTC 1 cut(s) 965
ScrFI CCNGG 4 cut(s) 518, 557, 558, 1582
SduI GDGCHC 6 cut(s) 36, 557, 739, 939, 1035, 1972
SfaNI GCATC 3 cut(s) 179, 952, 1456
SfcI CTRYAG 3 cut(s) 914, 1142, 1546
Sfr274I CTCGAG 1 cut(s) 1451
SfuI TTCGAA 1 cut(s) 542
SinI GGWCC 1 cut(s) 1551
SlaI CTCGAG 1 cut(s) 1451
SmaI CCCGGG 1 cut(s) 558
SmlI CTYRAG 5 cut(s) 283, 1388, 1451, 1589, 1877
SmoI CTYRAG 5 cut(s) 283, 1388, 1451, 1589, 1877
SphI GCATGC 1 cut(s) 1114
SsiI CCGC 2 cut(s) 1721, 1849
SspMI CTAG 6 cut(s) 816, 980, 1233, 1248, 1905, 1973
SstI GAGCTC 2 cut(s) 739, 939
StyD4I CCNGG 4 cut(s) 516, 555, 556, 1580
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 4 cut(s) 1019, 1119, 1478, 1537
TaiI ACGT 2 cut(s) 652, 799
TaqI TCGA 9 cut(s) 542, 566, 585, 880, 989, 1452, 1670, 1701, 1791
TatI WGTACW 2 cut(s) 1537, 1749
TauI GCSGC 1 cut(s) 1851
Tru1I TTAA 7 cut(s) 23, 111, 225, 663, 942, 1683, 1878
Tru9I TTAA 7 cut(s) 23, 111, 225, 663, 942, 1683, 1878
TscAI CASTG 1 cut(s) 1269
TseFI GTSAC 3 cut(s) 376, 797, 1690
Tsp45I GTSAC 3 cut(s) 376, 797, 1690
TspDTI ATGAA 4 cut(s) 563, 1211, 1267, 1510
TspGWI ACGGA 3 cut(s) 53, 1204, 1832
TspMI CCCGGG 1 cut(s) 556
TspRI CASTG 1 cut(s) 1269
Vha464I CTTAAG 1 cut(s) 1877
VpaK11BI GGWCC 1 cut(s) 1551
XapI RAATTY 6 cut(s) 117, 330, 944, 1007, 1207, 1759
XbaI TCTAGA 1 cut(s) 1232
XceI RCATGY 2 cut(s) 679, 1114
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
XhoI CTCGAG 1 cut(s) 1451
XmaI CCCGGG 1 cut(s) 556
XmiI GTMKAC 2 cut(s) 343, 989
XmnI GAANNNNTTC 2 cut(s) 1019, 1620
XspI CTAG 6 cut(s) 816, 980, 1233, 1248, 1905, 1973
ZrmI AGTACT 1 cut(s) 1751
Zsp2I ATGCAT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.