Rroxscaffold_4G00329730

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000017
Physical Location & Seq
Forward (+)
63061723 .. 63075413
13691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00329730.1

Sequence Viewer

Length: 2070 bp
ATGGCGAAATCTCAAGCCCGAGGTAGGCCTTATGGCTTAATCTCGAGCTACCTAATGTCTTTTGGTTTCGAAAGCCTGGATGGAACTCATCCGACTTTGCCGATGCTAAAGAACATGAGGCGGCTAAGTGTCGGGAATCCTTTCCCGGGCGCAAGCCTCTTTTGGGTTCCCTCATGTTTAGTGACCCGGAGAAGCGTGTGGGACCTCCCAAGGTCCACCTCTTTTCTCCGGGGCCCTTTCTTTGGGGATCGAACTTCCATTTTGTCCCCGAGATGGAATGGTGGCTTGGTAGCCGCTGATATATATATGAACAACCCTGCAGATGATGTGTCGGTTGAGATAAGTAATACACAATGGAATGGTGTAGAGGTGACAGAATCTGAAAGTACAAGAATAAAAAAGTGGCCAGAAGTAAAGGACATTCTGAATCCACATGATGACGACGAGCCAAAGATTTTCTTTCCGATGTGGGATGTAATCTTTATGATATCGTGTGCAATTGCTGTCTTCCTTGATCCTTTGTACAGTTACATTCCGGTCGTCGACAAGGACAGGACCTGCTACTTTTGGGATCAAAAGTTGATGTGGACATTTCTGGGCTTAAGATCTGCTGTAGATCTTTTTTATATGATGGACATTATCATTTTCTTACATCGAATTCATAGCATAAATATTACTTATGCCAAGTTTGCTGCCTCCTGGTCCTGGAAAGTAAAGGATGGTACAGTCTTAAATTTGAAGAAAAAGAAATCACTTAAGGAACGTATTCGCAAGCGTTTTCCCGTTCTACCTCGCATTTTCGTTGCTCTTCCAATCCTACAGGCTTTAAAAAACAGATCAGATCAGCTTAAAATGAAGAGGAAGGTAAAAATGATGAGTCTAGAGGTAGATTTGTGGTTATCAAAAAATAACCTCCCTCGAAAAGATCTGAGGCGGTTAAAGAAAATGATCATGAAAAATGTAAAAGAAAAACTTGAAGAAAAAAAAGATATCGATATGCACAATGTCCTCAGCATTCTCCCCATAGTACAGAAAAGGCGTATCATGTGCATTCTTCGCTTGGCTTCGCTGAAGGAAGTTGTCATGTTTAGAACTATGAATGAACAAGTACTGGAAGCAATTTGCGAGCATCTCAAGCCAGTGACCTATACCGAGGGCTGCAACATTATTCAAGAGGGAAAGCCACTTGAGATGATGCTTTTCATCACGCAAGGCACCGCATGGACTTACATCACTAGTAGTACCAATGGCGCAACAAGAAGTTCCTCCGTCATCAAGTACCTCAAGAGAGGTGATCTTTGTGGAGAAGAACTCTTAAATTGCATATCAAAACTTGCTGCCTTTTCAGACTTTCCCATCTCAACCAGAGTTGTGAAGGCCCAAACAAGAATTGAAGGATTTGCTTTAAGGGCGCATGACTTGAAGAGTGTTGTCTCCAACTTTTGGTGGCATTTTAGAAGGGAGGAGCTTGATCGAGTAGATGGCTCTCAATTGCCGGAGTGGGAACATGTGGCAGCTTCTTTCATACAAGAAAAATGGCGCCTCCGCCGTCATGCAAAGTCTAGCAAATCCTGTGAGACTCGAGATATCTTGACCGAAAGCTTCGGTGGTGGAAAATTTCCGAATCCGGCGAGCTTGAATTCCGAAGTAAAAACTTCAATTTCAGGCCTCGATTCCTTCTGGAGAGTTGTTAAGAACATCAAGGCGAACTCACTGGTTCAAGAATCACTCAAAACGAAGCTCTACAGCTCGAGATATCTTGATTGGAACCAAAACGGGCTCAAAGCCGGGCGGAGCTTTCTGCCGTCGGCGGCGGCAGTGTTGCGGCGCAAGGTTGCCCCGGTAGCTGCGCAAGGCCGATACGAAGTTAATGGAGGTGGTCCGACGCCGTTTGGTGGCCGGTGGAGGGAGAGAGAGCCGGAGAAGCCGTGCTCGTTTTCGAATGGGTTTCGGACGAGAAAGAGAGTGCGAGTGAGAGAGAGGGAGAGAAAGTGTCAAAGCAGAAGCACTGCTTTCCCTTTGTTGCTCAAAACACGGAATCATGCTCCTCTTTTCCTTTATCCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase_Tyr cNMP_binding

Protein Analysis

689

Amino Acids

79.44

Weight (kDa)

9.94

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1851
Acc36I ACCTGC 1 cut(s) 566
AccB1I GGYRCC 2 cut(s) 1214, 1539
AccB7I CCANNNNNTGG 1 cut(s) 1443
AccI GTMKAC 1 cut(s) 543
AciI CCGC 9 cut(s) 121, 294, 934, 1218, 1546, 1792, 1811, 1814, 1825
AclWI GGATC 3 cut(s) 255, 509, 579
AcoI YGGCCR 2 cut(s) 404, 1897
AcsI RAATTY 4 cut(s) 657, 733, 1616, 1639
AcuI CTGAAG 1 cut(s) 1091
AcyI GRCGYC 2 cut(s) 1540, 1886
AfaI GTAC 7 cut(s) 388, 524, 724, 1029, 1110, 1243, 1280
AfiI CCNNNNNNNGG 9 cut(s) 24, 146, 163, 242, 273, 705, 1443, 1895, 1906
AflII CTTAAG 2 cut(s) 601, 755
AflIII ACRYGT 1 cut(s) 1507
AgsI TTSAA 8 cut(s) 739, 977, 1172, 1394, 1423, 1639, 1659, 1721
AhlI ACTAGT 1 cut(s) 1235
AjnI CCWGG 3 cut(s) 75, 698, 704
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
Alw21I GWGCWC 1 cut(s) 1934
Alw26I GTCTC 2 cut(s) 1438, 1571
AlwI GGATC 3 cut(s) 255, 509, 579
AlwNI CAGNNNCTG 2 cut(s) 380, 558
Ama87I CYCGRG 6 cut(s) 18, 43, 145, 268, 1581, 1750
AoxI GGCC 7 cut(s) 26, 232, 404, 1377, 1666, 1855, 1897
ApaI GGGCCC 1 cut(s) 236
ApeKI GCWGC 5 cut(s) 692, 1158, 1337, 1514, 1847
ApoI RAATTY 4 cut(s) 657, 733, 1616, 1639
Asp700I GAANNNNTTC 2 cut(s) 140, 765
AspLEI GCGC 6 cut(s) 152, 1253, 1414, 1542, 1830, 1852
AspS9I GGNCC 8 cut(s) 202, 213, 232, 233, 555, 702, 1378, 1880
AsuC2I CCSGG 6 cut(s) 146, 147, 187, 230, 1789, 1841
AsuHPI GGTGA 2 cut(s) 382, 1304
AsuII TTCGAA 2 cut(s) 69, 1940
AvaI CYCGRG 6 cut(s) 18, 43, 145, 268, 1581, 1750
AvaII GGWCC 5 cut(s) 202, 213, 555, 702, 1880
BaeGI GKGCMC 1 cut(s) 236
BalI TGGCCA 1 cut(s) 406
BanI GGYRCC 2 cut(s) 1214, 1539
BanII GRGCYC 2 cut(s) 236, 1782
BbsI GAAGAC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 1934
BbvCI CCTCAGC 1 cut(s) 1010
BbvI GCAGC 5 cut(s) 679, 1145, 1324, 1526, 1834
BccI CCATC 6 cut(s) 74, 267, 625, 713, 1364, 1475
BceAI ACGGC 4 cut(s) 1533, 1789, 1873, 1912
BciT130I CCWGG 3 cut(s) 77, 700, 706
BclI TGATCA 1 cut(s) 948
BcnI CCSGG 6 cut(s) 146, 147, 187, 230, 1789, 1841
BcoDI GTCTC 2 cut(s) 1438, 1571
BcuI ACTAGT 1 cut(s) 1235
BfaI CTAG 3 cut(s) 881, 1236, 1563
BfmI CTRYAG 4 cut(s) 318, 612, 818, 1744
BfoI RGCGCY 1 cut(s) 1543
BfrI CTTAAG 2 cut(s) 601, 755
BfuAI ACCTGC 1 cut(s) 566
BglII AGATCT 3 cut(s) 605, 616, 925
BmcAI AGTACT 1 cut(s) 1110
Bme1390I CCNGG 9 cut(s) 77, 146, 147, 187, 230, 700, 706, 1789, 1841
Bme18I GGWCC 5 cut(s) 202, 213, 555, 702, 1880
BmeT110I CYCGRG 6 cut(s) 18, 43, 145, 268, 1581, 1750
BmgT120I GGNCC 8 cut(s) 202, 213, 232, 233, 555, 702, 1378, 1880
BmiI GGNNCC 7 cut(s) 168, 203, 233, 234, 1216, 1541, 1769
BmrFI CCNGG 9 cut(s) 77, 146, 147, 187, 230, 700, 706, 1789, 1841
BmsI GCATC 3 cut(s) 93, 1138, 1185
BpiI GAAGAC 1 cut(s) 499
BplI GAGNNNNNCTC 2 cut(s) 1296, 1328
BpmI CTGGAG 1 cut(s) 1702
Bpu10I CCTNAGC 1 cut(s) 1010
Bpu14I TTCGAA 2 cut(s) 69, 1940
BpuEI CTTGAG 3 cut(s) 1118, 1208, 1268
BpuMI CCSGG 6 cut(s) 146, 147, 187, 230, 1789, 1841
Bsa29I ATCGAT 1 cut(s) 993
BsaHI GRCGYC 2 cut(s) 1540, 1886
BsaJI CCNNGG 6 cut(s) 19, 145, 209, 229, 1152, 1839
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 4 cut(s) 1913, 1943, 1976, 2006
Bsc4I CCNNNNNNNGG 9 cut(s) 24, 146, 163, 242, 273, 705, 1443, 1895, 1906
Bse118I RCCGGY 1 cut(s) 1899
Bse1I ACTGG 3 cut(s) 1116, 1139, 1719
BseBI CCWGG 3 cut(s) 77, 700, 706
BseCI ATCGAT 1 cut(s) 993
BseDI CCNNGG 6 cut(s) 19, 145, 209, 229, 1152, 1839
BseGI GGATG 4 cut(s) 85, 88, 478, 724
BseLI CCNNNNNNNGG 9 cut(s) 24, 146, 163, 242, 273, 705, 1443, 1895, 1906
BseMII CTCAG 2 cut(s) 920, 1024
BseNI ACTGG 3 cut(s) 1116, 1139, 1719
BseRI GAGGAG 2 cut(s) 1478, 2037
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 5 cut(s) 679, 1145, 1324, 1526, 1834
Bsh1285I CGRYCG 1 cut(s) 540
BshFI GGCC 7 cut(s) 28, 234, 406, 1379, 1668, 1857, 1899
BshNI GGYRCC 2 cut(s) 1214, 1539
BshVI ATCGAT 1 cut(s) 993
BsiEI CGRYCG 1 cut(s) 540
BsiHKAI GWGCWC 1 cut(s) 1934
BsiHKCI CYCGRG 6 cut(s) 18, 43, 145, 268, 1581, 1750
BslFI GGGAC 2 cut(s) 215, 250
BslI CCNNNNNNNGG 9 cut(s) 24, 146, 163, 242, 273, 705, 1443, 1895, 1906
BsmAI GTCTC 2 cut(s) 1438, 1571
BsmFI GGGAC 2 cut(s) 215, 250
BsmI GAATGC 2 cut(s) 1014, 1050
BsnI GGCC 7 cut(s) 28, 234, 406, 1379, 1668, 1857, 1899
BsoBI CYCGRG 6 cut(s) 18, 43, 145, 268, 1581, 1750
Bsp119I TTCGAA 2 cut(s) 69, 1940
Bsp120I GGGCCC 1 cut(s) 232
Bsp1286I GDGCHC 3 cut(s) 236, 1782, 1934
Bsp1407I TGTACA 1 cut(s) 522
BspACI CCGC 9 cut(s) 121, 294, 934, 1218, 1546, 1792, 1811, 1814, 1825
BspANI GGCC 7 cut(s) 28, 234, 406, 1379, 1668, 1857, 1899
BspCNI CTCAG 2 cut(s) 921, 1023
BspDI ATCGAT 1 cut(s) 993
BspHI TCATGA 1 cut(s) 951
BspLI GGNNCC 7 cut(s) 168, 203, 233, 234, 1216, 1541, 1769
BspMAI CTGCAG 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 566
BspPI GGATC 3 cut(s) 255, 509, 579
BspQI GCTCTTC 1 cut(s) 813
BspT104I TTCGAA 2 cut(s) 69, 1940
BspT107I GGYRCC 2 cut(s) 1214, 1539
BspTI CTTAAG 2 cut(s) 601, 755
BsrFI RCCGGY 1 cut(s) 1899
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 3 cut(s) 1116, 1139, 1719
BssAI RCCGGY 1 cut(s) 1899
BssECI CCNNGG 6 cut(s) 19, 145, 209, 229, 1152, 1839
BssNI GRCGYC 2 cut(s) 1540, 1886
BssT1I CCWWGG 1 cut(s) 209
Bst2UI CCWGG 3 cut(s) 77, 700, 706
Bst4CI ACNGT 3 cut(s) 527, 727, 2067
Bst6I CTCTTC 3 cut(s) 813, 851, 1418
BstACI GRCGYC 2 cut(s) 1540, 1886
BstAFI CTTAAG 2 cut(s) 601, 755
BstAUI TGTACA 1 cut(s) 522
BstBI TTCGAA 2 cut(s) 69, 1940
BstC8I GCNNGC 4 cut(s) 154, 773, 1127, 1633
BstDEI CTNAG 3 cut(s) 125, 929, 1010
BstF5I GGATG 4 cut(s) 85, 88, 478, 724
BstH2I RGCGCY 1 cut(s) 1543
BstHHI GCGC 6 cut(s) 152, 1253, 1414, 1542, 1830, 1852
BstMAI GTCTC 2 cut(s) 1438, 1571
BstMCI CGRYCG 1 cut(s) 540
BstMWI GCNNNNNNNGC 6 cut(s) 689, 1056, 1135, 1409, 1844, 1924
BstNI CCWGG 3 cut(s) 77, 700, 706
BstNSI RCATGY 1 cut(s) 1511
BstSCI CCNGG 9 cut(s) 75, 144, 145, 185, 228, 698, 704, 1787, 1839
BstSFI CTRYAG 4 cut(s) 318, 612, 818, 1744
BstSLI GKGCMC 1 cut(s) 236
BstV1I GCAGC 5 cut(s) 679, 1145, 1324, 1526, 1834
BstV2I GAAGAC 1 cut(s) 499
BstX2I RGATCY 3 cut(s) 605, 616, 925
BstYI RGATCY 3 cut(s) 605, 616, 925
Bsu15I ATCGAT 1 cut(s) 993
BsuRI GGCC 7 cut(s) 28, 234, 406, 1379, 1668, 1857, 1899
BsuTUI ATCGAT 1 cut(s) 993
BtsCI GGATG 4 cut(s) 85, 88, 478, 724
BtsI GCAGTG 2 cut(s) 1824, 2007
BtsIMutI CAGTG 4 cut(s) 1146, 1712, 1824, 2007
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 4 cut(s) 154, 773, 1127, 1633
CaiI CAGNNNCTG 2 cut(s) 380, 558
CciI TCATGA 1 cut(s) 951
CfoI GCGC 6 cut(s) 152, 1253, 1414, 1542, 1830, 1852
Cfr10I RCCGGY 1 cut(s) 1899
Cfr13I GGNCC 8 cut(s) 202, 213, 232, 233, 555, 702, 1378, 1880
Cfr9I CCCGGG 1 cut(s) 145
ClaI ATCGAT 1 cut(s) 993
CseI GACGC 1 cut(s) 1894
Csp6I GTAC 7 cut(s) 387, 523, 723, 1028, 1109, 1242, 1279
CviQI GTAC 7 cut(s) 387, 523, 723, 1028, 1109, 1242, 1279
DdeI CTNAG 3 cut(s) 125, 929, 1010
DinI GGCGCC 1 cut(s) 1541
DraI TTTAAA 1 cut(s) 828
EaeI YGGCCR 2 cut(s) 404, 1897
Eam1104I CTCTTC 3 cut(s) 813, 851, 1418
EarI CTCTTC 3 cut(s) 813, 851, 1418
EciI GGCGGA 2 cut(s) 1535, 1807
Eco130I CCWWGG 1 cut(s) 209
Eco147I AGGCCT 2 cut(s) 28, 1668
Eco24I GRGCYC 2 cut(s) 236, 1782
Eco32I GATATC 4 cut(s) 489, 991, 1588, 1757
Eco47I GGWCC 5 cut(s) 202, 213, 555, 702, 1880
Eco57I CTGAAG 1 cut(s) 1091
Eco88I CYCGRG 6 cut(s) 18, 43, 145, 268, 1581, 1750
EcoO109I RGGNCCY 4 cut(s) 202, 232, 233, 555
EcoRI GAATTC 2 cut(s) 657, 1639
EcoRII CCWGG 3 cut(s) 75, 698, 704
EcoRV GATATC 4 cut(s) 489, 991, 1588, 1757
EcoT14I CCWWGG 1 cut(s) 209
EcoT38I GRGCYC 2 cut(s) 236, 1782
EgeI GGCGCC 1 cut(s) 1541
EheI GGCGCC 1 cut(s) 1541
ErhI CCWWGG 1 cut(s) 209
FalI AAGNNNNNCTT 6 cut(s) 443, 475, 957, 989, 1996, 2028
FaqI GGGAC 2 cut(s) 215, 250
FbaI TGATCA 1 cut(s) 948
FblI GTMKAC 1 cut(s) 543
FokI GGATG 4 cut(s) 75, 92, 485, 731
FriOI GRGCYC 2 cut(s) 236, 1782
FspBI CTAG 3 cut(s) 881, 1236, 1563
FspI TGCGCA 1 cut(s) 1851
GlaI GCGC 6 cut(s) 151, 1252, 1413, 1541, 1829, 1851
GsuI CTGGAG 1 cut(s) 1702
HaeII RGCGCY 1 cut(s) 1543
HaeIII GGCC 7 cut(s) 28, 234, 406, 1379, 1668, 1857, 1899
HgaI GACGC 1 cut(s) 1894
HhaI GCGC 6 cut(s) 152, 1253, 1414, 1542, 1830, 1852
Hin1I GRCGYC 2 cut(s) 1540, 1886
Hin6I GCGC 6 cut(s) 150, 1251, 1412, 1540, 1828, 1850
HinP1I GCGC 6 cut(s) 150, 1251, 1412, 1540, 1828, 1850
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HindIII AAGCTT 1 cut(s) 1600
HinfI GANTC 9 cut(s) 136, 377, 427, 877, 1579, 1624, 1673, 1724, 2038
HphI GGTGA 2 cut(s) 382, 1304
Hpy166II GTNNAC 3 cut(s) 216, 544, 588
Hpy8I GTNNAC 3 cut(s) 216, 544, 588
Hpy99I CGWCG 4 cut(s) 446, 545, 1810, 1888
HpyAV CCTTC 6 cut(s) 856, 1066, 1369, 1388, 1452, 1687
HpyCH4III ACNGT 3 cut(s) 527, 727, 2067
HpyCH4IV ACGT 1 cut(s) 763
HpyCH4V TGCA 7 cut(s) 320, 497, 1000, 1050, 1161, 1323, 1556
HpyF10VI GCNNNNNNNGC 6 cut(s) 689, 1056, 1135, 1409, 1844, 1924
HpyF3I CTNAG 3 cut(s) 125, 929, 1010
HpySE526I ACGT 1 cut(s) 763
Hsp92I GRCGYC 2 cut(s) 1540, 1886
HspAI GCGC 6 cut(s) 150, 1251, 1412, 1540, 1828, 1850
KasI GGCGCC 1 cut(s) 1539
Ksp22I TGATCA 1 cut(s) 948
LguI GCTCTTC 1 cut(s) 813
LmnI GCTCC 3 cut(s) 1465, 1794, 2050
Lsp1109I GCAGC 5 cut(s) 679, 1145, 1324, 1526, 1834
LweI GCATC 3 cut(s) 93, 1138, 1185
MaeI CTAG 3 cut(s) 881, 1236, 1563
MaeII ACGT 1 cut(s) 763
MaeIII GTNAC 4 cut(s) 181, 370, 527, 1141
MboII GAAGA 8 cut(s) 499, 751, 800, 868, 989, 1046, 1319, 1435
MfeI CAATTG 2 cut(s) 498, 1490
MflI RGATCY 3 cut(s) 605, 616, 925
MhlI GDGCHC 3 cut(s) 236, 1782, 1934
MlsI TGGCCA 1 cut(s) 406
MluNI TGGCCA 1 cut(s) 406
Mly113I GGCGCC 1 cut(s) 1540
MlyI GAGTC 2 cut(s) 886, 1573
MmeI TCCRAC 3 cut(s) 116, 1461, 1907
Mox20I TGGCCA 1 cut(s) 406
MroXI GAANNNNTTC 2 cut(s) 140, 765
MscI TGGCCA 1 cut(s) 406
Msp20I TGGCCA 1 cut(s) 406
MspA1I CMGCKG 1 cut(s) 296
MspCI CTTAAG 2 cut(s) 601, 755
MspR9I CCNGG 9 cut(s) 77, 146, 147, 187, 230, 700, 706, 1789, 1841
MunI CAATTG 2 cut(s) 498, 1490
Mva1269I GAATGC 2 cut(s) 1014, 1050
MvaI CCWGG 3 cut(s) 77, 700, 706
MwoI GCNNNNNNNGC 6 cut(s) 689, 1056, 1135, 1409, 1844, 1924
NarI GGCGCC 1 cut(s) 1540
NciI CCSGG 6 cut(s) 146, 147, 187, 230, 1789, 1841
NlaIV GGNNCC 7 cut(s) 168, 203, 233, 234, 1216, 1541, 1769
NmuCI GTSAC 3 cut(s) 181, 370, 1141
NsbI TGCGCA 1 cut(s) 1851
NspI RCATGY 1 cut(s) 1511
NspV TTCGAA 2 cut(s) 69, 1940
PaeR7I CTCGAG 3 cut(s) 43, 1581, 1750
PagI TCATGA 1 cut(s) 951
PceI AGGCCT 2 cut(s) 28, 1668
PciI ACATGT 1 cut(s) 1507
PciSI GCTCTTC 1 cut(s) 813
PctI GAATGC 2 cut(s) 1014, 1050
PdmI GAANNNNTTC 2 cut(s) 140, 765
PfeI GAWTC 7 cut(s) 136, 377, 427, 1624, 1673, 1724, 2038
PflMI CCANNNNNTGG 1 cut(s) 1443
PfoI TCCNGGA 1 cut(s) 704
PleI GAGTC 2 cut(s) 885, 1573
PluTI GGCGCC 1 cut(s) 1543
PpsI GAGTC 2 cut(s) 885, 1573
PpuMI RGGWCCY 2 cut(s) 202, 555
PscI ACATGT 1 cut(s) 1507
Psp5II RGGWCCY 2 cut(s) 202, 555
Psp6I CCWGG 3 cut(s) 75, 698, 704
PspGI CCWGG 3 cut(s) 75, 698, 704
PspN4I GGNNCC 7 cut(s) 168, 203, 233, 234, 1216, 1541, 1769
PspOMI GGGCCC 1 cut(s) 232
PspPI GGNCC 8 cut(s) 202, 213, 232, 233, 555, 702, 1378, 1880
PspPPI RGGWCCY 2 cut(s) 202, 555
PstI CTGCAG 1 cut(s) 322
PstNI CAGNNNCTG 2 cut(s) 380, 558
PsuI RGATCY 3 cut(s) 605, 616, 925
RsaI GTAC 7 cut(s) 388, 524, 724, 1029, 1110, 1243, 1280
RsaNI GTAC 7 cut(s) 387, 523, 723, 1028, 1109, 1242, 1279
SalI GTCGAC 1 cut(s) 542
SapI GCTCTTC 1 cut(s) 813
Sau96I GGNCC 8 cut(s) 202, 213, 232, 233, 555, 702, 1378, 1880
ScaI AGTACT 1 cut(s) 1110
SchI GAGTC 2 cut(s) 886, 1573
ScrFI CCNGG 9 cut(s) 77, 146, 147, 187, 230, 700, 706, 1789, 1841
SduI GDGCHC 3 cut(s) 236, 1782, 1934
SfaNI GCATC 3 cut(s) 93, 1138, 1185
SfcI CTRYAG 4 cut(s) 318, 612, 818, 1744
SfoI GGCGCC 1 cut(s) 1541
Sfr274I CTCGAG 3 cut(s) 43, 1581, 1750
SfuI TTCGAA 2 cut(s) 69, 1940
SinI GGWCC 5 cut(s) 202, 213, 555, 702, 1880
SlaI CTCGAG 3 cut(s) 43, 1581, 1750
SmaI CCCGGG 1 cut(s) 147
SmlI CTYRAG 9 cut(s) 12, 43, 601, 755, 1133, 1187, 1283, 1581, 1750
SmoI CTYRAG 9 cut(s) 12, 43, 601, 755, 1133, 1187, 1283, 1581, 1750
SpeI ACTAGT 1 cut(s) 1235
SseBI AGGCCT 2 cut(s) 28, 1668
SsiI CCGC 9 cut(s) 121, 294, 934, 1218, 1546, 1792, 1811, 1814, 1825
SspDI GGCGCC 1 cut(s) 1539
SspI AATATT 1 cut(s) 673
SspMI CTAG 3 cut(s) 881, 1236, 1563
StuI AGGCCT 2 cut(s) 28, 1668
StyD4I CCNGG 9 cut(s) 75, 144, 145, 185, 228, 698, 704, 1787, 1839
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 3 cut(s) 527, 727, 2067
TaiI ACGT 1 cut(s) 766
TaqII GACCGA 1 cut(s) 1610
TatI WGTACW 4 cut(s) 386, 522, 1027, 1108
TauI GCSGC 5 cut(s) 124, 296, 1814, 1817, 1828
TfiI GAWTC 7 cut(s) 136, 377, 427, 1624, 1673, 1724, 2038
TscAI CASTG 4 cut(s) 1146, 1719, 1824, 2014
TseFI GTSAC 3 cut(s) 181, 370, 1141
TseI GCWGC 5 cut(s) 692, 1158, 1337, 1514, 1847
Tsp45I GTSAC 3 cut(s) 181, 370, 1141
TspDTI ATGAA 8 cut(s) 323, 650, 869, 968, 1112, 1116, 1192, 1513
TspGWI ACGGA 2 cut(s) 1258, 2050
TspMI CCCGGG 1 cut(s) 145
TspRI CASTG 4 cut(s) 1146, 1719, 1824, 2014
Van91I CCANNNNNTGG 1 cut(s) 1443
Vha464I CTTAAG 2 cut(s) 601, 755
VpaK11BI GGWCC 5 cut(s) 202, 213, 555, 702, 1880
XapI RAATTY 4 cut(s) 657, 733, 1616, 1639
XbaI TCTAGA 1 cut(s) 880
XceI RCATGY 1 cut(s) 1511
XhoI CTCGAG 3 cut(s) 43, 1581, 1750
XmaI CCCGGG 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 543
XmnI GAANNNNTTC 2 cut(s) 140, 765
XspI CTAG 3 cut(s) 881, 1236, 1563
ZrmI AGTACT 1 cut(s) 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.