Cyclic nucleotide-monophosphate binding domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 1456, 1769, 2131 |
| AatII | GACGTC | 1 cut(s) | 1209 |
| Acc36I | ACCTGC | 5 cut(s) | 148, 562, 1456, 1769, 2131 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1486 |
| AccI | GTMKAC | 1 cut(s) | 1538 |
| AccII | CGCG | 1 cut(s) | 1336 |
| AciI | CCGC | 6 cut(s) | 95, 487, 569, 1336, 1650, 2573 |
| AclWI | GGATC | 5 cut(s) | 172, 272, 285, 2125, 2684 |
| AcoI | YGGCCR | 1 cut(s) | 1688 |
| AcsI | RAATTY | 4 cut(s) | 449, 1180, 1805, 2626 |
| AcuI | CTGAAG | 7 cut(s) | 75, 365, 392, 1079, 1508, 1844, 2445 |
| AcyI | GRCGYC | 1 cut(s) | 1206 |
| AfaI | GTAC | 6 cut(s) | 770, 961, 1353, 1500, 1885, 2141 |
| AfeI | AGCGCT | 1 cut(s) | 1764 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1486, 2329, 2759 |
| AflII | CTTAAG | 1 cut(s) | 1072 |
| AflIII | ACRYGT | 1 cut(s) | 518 |
| AgeI | ACCGGT | 1 cut(s) | 1012 |
| AgsI | TTSAA | 9 cut(s) | 158, 821, 1001, 1044, 1089, 1247, 1622, 1822, 2024 |
| AjnI | CCWGG | 1 cut(s) | 1975 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1575, 1607 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 269, 301 |
| Alw21I | GWGCWC | 3 cut(s) | 792, 1227, 2169 |
| Alw26I | GTCTC | 1 cut(s) | 2615 |
| AlwI | GGATC | 5 cut(s) | 172, 272, 285, 2125, 2684 |
| Aor51HI | AGCGCT | 1 cut(s) | 1764 |
| AoxI | GGCC | 4 cut(s) | 1688, 1902, 2528, 2693 |
| ApeKI | GCWGC | 2 cut(s) | 143, 2583 |
| ApoI | RAATTY | 4 cut(s) | 449, 1180, 1805, 2626 |
| AsiGI | ACCGGT | 1 cut(s) | 1012 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1677 |
| AspLEI | GCGC | 2 cut(s) | 1765, 2237 |
| AspS9I | GGNCC | 3 cut(s) | 574, 1698, 2590 |
| AsuC2I | CCSGG | 1 cut(s) | 2409 |
| AsuHPI | GGTGA | 5 cut(s) | 1763, 1793, 2098, 2112, 2696 |
| AsuII | TTCGAA | 2 cut(s) | 596, 1389 |
| AsuNHI | GCTAGC | 1 cut(s) | 779 |
| AvaII | GGWCC | 3 cut(s) | 574, 1698, 2590 |
| AxyI | CCTNAGG | 1 cut(s) | 2532 |
| BalI | TGGCCA | 1 cut(s) | 1690 |
| BamHI | GGATCC | 1 cut(s) | 277 |
| Bbv12I | GWGCWC | 3 cut(s) | 792, 1227, 2169 |
| BbvI | GCAGC | 2 cut(s) | 130, 2570 |
| BccI | CCATC | 3 cut(s) | 1484, 1699, 2629 |
| BceAI | ACGGC | 4 cut(s) | 1315, 1432, 1791, 2167 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 60, 94 |
| BciT130I | CCWGG | 1 cut(s) | 1977 |
| BciVI | GTATCC | 2 cut(s) | 2405, 2785 |
| BclI | TGATCA | 1 cut(s) | 865 |
| BcnI | CCSGG | 1 cut(s) | 2409 |
| BcoDI | GTCTC | 1 cut(s) | 2615 |
| BfaI | CTAG | 9 cut(s) | 248, 780, 1212, 1256, 1277, 1638, 2312, 2486, 2549 |
| BfmI | CTRYAG | 2 cut(s) | 1031, 2391 |
| BfoI | RGCGCY | 1 cut(s) | 1766 |
| BfrI | CTTAAG | 1 cut(s) | 1072 |
| BfuAI | ACCTGC | 5 cut(s) | 148, 562, 1456, 1769, 2131 |
| BfuI | GTATCC | 2 cut(s) | 2405, 2785 |
| BglII | AGATCT | 3 cut(s) | 379, 419, 2653 |
| BisI | GCNGC | 3 cut(s) | 96, 144, 2584 |
| BlsI | GCNGC | 3 cut(s) | 97, 145, 2585 |
| Bme1390I | CCNGG | 2 cut(s) | 1977, 2409 |
| Bme18I | GGWCC | 3 cut(s) | 574, 1698, 2590 |
| BmgT120I | GGNCC | 3 cut(s) | 574, 1698, 2590 |
| BmiI | GGNNCC | 1 cut(s) | 279 |
| BmrFI | CCNGG | 2 cut(s) | 1977, 2409 |
| BmrI | ACTGGG | 1 cut(s) | 1095 |
| BmsI | GCATC | 7 cut(s) | 260, 648, 693, 1311, 1578, 2341, 2758 |
| BmtI | GCTAGC | 1 cut(s) | 783 |
| BmuI | ACTGGG | 1 cut(s) | 1095 |
| Bpu10I | CCTNAGC | 1 cut(s) | 325 |
| Bpu14I | TTCGAA | 2 cut(s) | 596, 1389 |
| BpuEI | CTTGAG | 1 cut(s) | 2744 |
| BpuMI | CCSGG | 1 cut(s) | 2409 |
| BsaAI | YACGTR | 1 cut(s) | 2213 |
| BsaHI | GRCGYC | 1 cut(s) | 1206 |
| BsaJI | CCNNGG | 6 cut(s) | 671, 1413, 1722, 1918, 2398, 2787 |
| BsaWI | WCCGGW | 1 cut(s) | 1012 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1486, 2329, 2759 |
| Bse118I | RCCGGY | 1 cut(s) | 1012 |
| Bse1I | ACTGG | 7 cut(s) | 114, 279, 1101, 1362, 1368, 2133, 2383 |
| Bse21I | CCTNAGG | 1 cut(s) | 2532 |
| Bse3DI | GCAATG | 1 cut(s) | 1970 |
| BseBI | CCWGG | 1 cut(s) | 1977 |
| BseDI | CCNNGG | 6 cut(s) | 671, 1413, 1722, 1918, 2398, 2787 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1486, 2329, 2759 |
| BseMI | GCAATG | 1 cut(s) | 1970 |
| BseMII | CTCAG | 3 cut(s) | 414, 1781, 2523 |
| BseNI | ACTGG | 7 cut(s) | 114, 279, 1101, 1362, 1368, 2133, 2383 |
| BseRI | GAGGAG | 2 cut(s) | 59, 1235 |
| BseXI | GCAGC | 2 cut(s) | 130, 2570 |
| BseYI | CCCAGC | 1 cut(s) | 1056 |
| BsgI | GTGCAG | 3 cut(s) | 1490, 1674, 2109 |
| Bsh1236I | CGCG | 1 cut(s) | 1336 |
| BshFI | GGCC | 4 cut(s) | 1690, 1904, 2530, 2695 |
| BshTI | ACCGGT | 1 cut(s) | 1012 |
| BsiHKAI | GWGCWC | 3 cut(s) | 792, 1227, 2169 |
| BsiSI | CCGG | 2 cut(s) | 1013, 2409 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1486, 2329, 2759 |
| BsmAI | GTCTC | 1 cut(s) | 2615 |
| BsmI | GAATGC | 1 cut(s) | 2552 |
| BsnI | GGCC | 4 cut(s) | 1690, 1904, 2530, 2695 |
| Bsp119I | TTCGAA | 2 cut(s) | 596, 1389 |
| Bsp1286I | GDGCHC | 3 cut(s) | 792, 1227, 2169 |
| Bsp1407I | TGTACA | 1 cut(s) | 768 |
| Bsp19I | CCATGG | 1 cut(s) | 1918 |
| BspACI | CCGC | 6 cut(s) | 95, 487, 569, 1336, 1650, 2573 |
| BspANI | GGCC | 4 cut(s) | 1690, 1904, 2530, 2695 |
| BspCNI | CTCAG | 3 cut(s) | 415, 1782, 2524 |
| BspFNI | CGCG | 1 cut(s) | 1336 |
| BspHI | TCATGA | 1 cut(s) | 639 |
| BspLI | GGNNCC | 1 cut(s) | 279 |
| BspMAI | CTGCAG | 1 cut(s) | 1035 |
| BspMI | ACCTGC | 5 cut(s) | 148, 562, 1456, 1769, 2131 |
| BspOI | GCTAGC | 1 cut(s) | 783 |
| BspPI | GGATC | 5 cut(s) | 172, 272, 285, 2125, 2684 |
| BspQI | GCTCTTC | 2 cut(s) | 411, 2503 |
| BspT104I | TTCGAA | 2 cut(s) | 596, 1389 |
| BspTI | CTTAAG | 1 cut(s) | 1072 |
| BsrDI | GCAATG | 1 cut(s) | 1970 |
| BsrFI | RCCGGY | 1 cut(s) | 1012 |
| BsrGI | TGTACA | 1 cut(s) | 768 |
| BsrI | ACTGG | 7 cut(s) | 114, 279, 1101, 1362, 1368, 2133, 2383 |
| BssAI | RCCGGY | 1 cut(s) | 1012 |
| BssECI | CCNNGG | 6 cut(s) | 671, 1413, 1722, 1918, 2398, 2787 |
| BssNAI | GTATAC | 1 cut(s) | 1539 |
| BssNI | GRCGYC | 1 cut(s) | 1206 |
| BssT1I | CCWWGG | 4 cut(s) | 1413, 1918, 2398, 2787 |
| Bst1107I | GTATAC | 1 cut(s) | 1539 |
| Bst2UI | CCWGG | 1 cut(s) | 1977 |
| Bst4CI | ACNGT | 6 cut(s) | 31, 431, 910, 1396, 2361, 2522 |
| Bst6I | CTCTTC | 4 cut(s) | 411, 1254, 2450, 2503 |
| BstACI | GRCGYC | 1 cut(s) | 1206 |
| BstAFI | CTTAAG | 1 cut(s) | 1072 |
| BstAUI | TGTACA | 1 cut(s) | 768 |
| BstBAI | YACGTR | 1 cut(s) | 2213 |
| BstBI | TTCGAA | 2 cut(s) | 596, 1389 |
| BstC8I | GCNNGC | 5 cut(s) | 781, 839, 1154, 2720, 2813 |
| BstDEI | CTNAG | 5 cut(s) | 325, 365, 423, 1790, 2532 |
| BstDSI | CCRYGG | 2 cut(s) | 671, 1918 |
| BstFNI | CGCG | 1 cut(s) | 1336 |
| BstH2I | RGCGCY | 1 cut(s) | 1766 |
| BstHHI | GCGC | 2 cut(s) | 1765, 2237 |
| BstMAI | GTCTC | 1 cut(s) | 2615 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 948, 1525, 1944, 2393, 2657, 2812 |
| BstNI | CCWGG | 1 cut(s) | 1977 |
| BstNSI | RCATGY | 2 cut(s) | 522, 1789 |
| BstSCI | CCNGG | 2 cut(s) | 1975, 2407 |
| BstSFI | CTRYAG | 2 cut(s) | 1031, 2391 |
| BstUI | CGCG | 1 cut(s) | 1336 |
| BstV1I | GCAGC | 2 cut(s) | 130, 2570 |
| BstX2I | RGATCY | 4 cut(s) | 277, 379, 419, 2653 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2202 |
| BstYI | RGATCY | 4 cut(s) | 277, 379, 419, 2653 |
| BstZ17I | GTATAC | 1 cut(s) | 1539 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2532 |
| BsuI | GTATCC | 2 cut(s) | 2405, 2785 |
| BsuRI | GGCC | 4 cut(s) | 1690, 1904, 2530, 2695 |
| BtgI | CCRYGG | 2 cut(s) | 671, 1918 |
| BtsIMutI | CAGTG | 3 cut(s) | 371, 2126, 2376 |
| BveI | ACCTGC | 5 cut(s) | 148, 562, 1456, 1769, 2131 |
| Cac8I | GCNNGC | 5 cut(s) | 781, 839, 1154, 2720, 2813 |
| CciI | TCATGA | 1 cut(s) | 639 |
| CfoI | GCGC | 2 cut(s) | 1765, 2237 |
| Cfr10I | RCCGGY | 1 cut(s) | 1012 |
| Cfr13I | GGNCC | 3 cut(s) | 574, 1698, 2590 |
| Csp6I | GTAC | 6 cut(s) | 769, 960, 1352, 1499, 1884, 2140 |
| CspAI | ACCGGT | 1 cut(s) | 1012 |
| CviQI | GTAC | 6 cut(s) | 769, 960, 1352, 1499, 1884, 2140 |
| DdeI | CTNAG | 5 cut(s) | 325, 365, 423, 1790, 2532 |
| DraI | TTTAAA | 1 cut(s) | 1804 |
| EaeI | YGGCCR | 1 cut(s) | 1688 |
| Eam1104I | CTCTTC | 4 cut(s) | 411, 1254, 2450, 2503 |
| EarI | CTCTTC | 4 cut(s) | 411, 1254, 2450, 2503 |
| Eco130I | CCWWGG | 4 cut(s) | 1413, 1918, 2398, 2787 |
| Eco147I | AGGCCT | 2 cut(s) | 2530, 2695 |
| Eco47I | GGWCC | 3 cut(s) | 574, 1698, 2590 |
| Eco47III | AGCGCT | 1 cut(s) | 1764 |
| Eco57I | CTGAAG | 7 cut(s) | 75, 365, 392, 1079, 1508, 1844, 2445 |
| Eco81I | CCTNAGG | 1 cut(s) | 2532 |
| EcoO109I | RGGNCCY | 1 cut(s) | 574 |
| EcoRII | CCWGG | 1 cut(s) | 1975 |
| EcoT14I | CCWWGG | 4 cut(s) | 1413, 1918, 2398, 2787 |
| ErhI | CCWWGG | 4 cut(s) | 1413, 1918, 2398, 2787 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 738, 770 |
| FbaI | TGATCA | 1 cut(s) | 865 |
| FblI | GTMKAC | 1 cut(s) | 1538 |
| Fnu4HI | GCNGC | 3 cut(s) | 96, 144, 2584 |
| Fsp4HI | GCNGC | 3 cut(s) | 96, 144, 2584 |
| FspBI | CTAG | 9 cut(s) | 248, 780, 1212, 1256, 1277, 1638, 2312, 2486, 2549 |
| GlaI | GCGC | 2 cut(s) | 1764, 2236 |
| GluI | GCNGC | 3 cut(s) | 96, 144, 2584 |
| GsaI | CCCAGC | 1 cut(s) | 1060 |
| HaeII | RGCGCY | 1 cut(s) | 1766 |
| HaeIII | GGCC | 4 cut(s) | 1690, 1904, 2530, 2695 |
| HapII | CCGG | 2 cut(s) | 1013, 2409 |
| HhaI | GCGC | 2 cut(s) | 1765, 2237 |
| Hin1I | GRCGYC | 1 cut(s) | 1206 |
| Hin6I | GCGC | 2 cut(s) | 1763, 2235 |
| HinP1I | GCGC | 2 cut(s) | 1763, 2235 |
| HincII | GTYRAC | 7 cut(s) | 334, 1290, 1452, 1573, 2044, 2146, 2602 |
| HindII | GTYRAC | 7 cut(s) | 334, 1290, 1452, 1573, 2044, 2146, 2602 |
| HindIII | AAGCTT | 2 cut(s) | 491, 1676 |
| HpaI | GTTAAC | 1 cut(s) | 1290 |
| HpaII | CCGG | 2 cut(s) | 1013, 2409 |
| HphI | GGTGA | 5 cut(s) | 1763, 1793, 2098, 2112, 2696 |
| Hpy188III | TCNNGA | 6 cut(s) | 107, 640, 1005, 1487, 1562, 2753 |
| Hpy99I | CGWCG | 1 cut(s) | 1211 |
| HpyAV | CCTTC | 6 cut(s) | 155, 705, 1007, 1103, 1894, 2826 |
| HpyCH4III | ACNGT | 6 cut(s) | 31, 431, 910, 1396, 2361, 2522 |
| HpyCH4IV | ACGT | 4 cut(s) | 1206, 2142, 2212, 2463 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 948, 1525, 1944, 2393, 2657, 2812 |
| HpyF3I | CTNAG | 5 cut(s) | 325, 365, 423, 1790, 2532 |
| HpySE526I | ACGT | 4 cut(s) | 1206, 2142, 2212, 2463 |
| Hsp92I | GRCGYC | 1 cut(s) | 1206 |
| HspAI | GCGC | 2 cut(s) | 1763, 2235 |
| Ksp22I | TGATCA | 1 cut(s) | 865 |
| KspAI | GTTAAC | 1 cut(s) | 1290 |
| LguI | GCTCTTC | 2 cut(s) | 411, 2503 |
| LmnI | GCTCC | 3 cut(s) | 794, 1222, 1273 |
| Lsp1109I | GCAGC | 2 cut(s) | 130, 2570 |
| LweI | GCATC | 7 cut(s) | 260, 648, 693, 1311, 1578, 2341, 2758 |
| MaeI | CTAG | 9 cut(s) | 248, 780, 1212, 1256, 1277, 1638, 2312, 2486, 2549 |
| MaeII | ACGT | 4 cut(s) | 1206, 2142, 2212, 2463 |
| MaeIII | GTNAC | 8 cut(s) | 25, 58, 890, 1781, 1979, 2001, 2208, 2459 |
| MfeI | CAATTG | 2 cut(s) | 1746, 1847 |
| MflI | RGATCY | 4 cut(s) | 277, 379, 419, 2653 |
| MhlI | GDGCHC | 3 cut(s) | 792, 1227, 2169 |
| MlsI | TGGCCA | 1 cut(s) | 1690 |
| MluNI | TGGCCA | 1 cut(s) | 1690 |
| MlyI | GAGTC | 6 cut(s) | 709, 1447, 1568, 1742, 2216, 2597 |
| MmeI | TCCRAC | 3 cut(s) | 1182, 1504, 2084 |
| Mox20I | TGGCCA | 1 cut(s) | 1690 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1677 |
| MscI | TGGCCA | 1 cut(s) | 1690 |
| MslI | CAYNNNNRTG | 4 cut(s) | 897, 1488, 2270, 2289 |
| Msp20I | TGGCCA | 1 cut(s) | 1690 |
| MspCI | CTTAAG | 1 cut(s) | 1072 |
| MspI | CCGG | 2 cut(s) | 1013, 2409 |
| MspR9I | CCNGG | 2 cut(s) | 1977, 2409 |
| MunI | CAATTG | 2 cut(s) | 1746, 1847 |
| Mva1269I | GAATGC | 1 cut(s) | 2552 |
| MvaI | CCWGG | 1 cut(s) | 1977 |
| MvnI | CGCG | 1 cut(s) | 1336 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 948, 1525, 1944, 2393, 2657, 2812 |
| NciI | CCSGG | 1 cut(s) | 2409 |
| NcoI | CCATGG | 1 cut(s) | 1918 |
| NheI | GCTAGC | 1 cut(s) | 779 |
| NlaIV | GGNNCC | 1 cut(s) | 279 |
| NmeAIII | GCCGAG | 2 cut(s) | 1435, 1703 |
| NmuCI | GTSAC | 4 cut(s) | 890, 1781, 2208, 2459 |
| NspI | RCATGY | 2 cut(s) | 522, 1789 |
| NspV | TTCGAA | 2 cut(s) | 596, 1389 |
| PagI | TCATGA | 1 cut(s) | 639 |
| PaqCI | CACCTGC | 3 cut(s) | 1456, 1769, 2131 |
| PceI | AGGCCT | 2 cut(s) | 2530, 2695 |
| PciI | ACATGT | 1 cut(s) | 518 |
| PciSI | GCTCTTC | 2 cut(s) | 411, 2503 |
| PctI | GAATGC | 1 cut(s) | 2552 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1677 |
| PfeI | GAWTC | 4 cut(s) | 110, 206, 340, 1408 |
| PflFI | GACNNNGTC | 1 cut(s) | 1430 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1486 |
| PinAI | ACCGGT | 1 cut(s) | 1012 |
| PkrI | GCNGC | 3 cut(s) | 97, 145, 2585 |
| PleI | GAGTC | 6 cut(s) | 709, 1447, 1568, 1741, 2215, 2597 |
| PpsI | GAGTC | 6 cut(s) | 709, 1447, 1568, 1741, 2215, 2597 |
| Ppu21I | YACGTR | 1 cut(s) | 2213 |
| PpuMI | RGGWCCY | 1 cut(s) | 574 |
| PscI | ACATGT | 1 cut(s) | 518 |
| Psp5II | RGGWCCY | 1 cut(s) | 574 |
| Psp6I | CCWGG | 1 cut(s) | 1975 |
| PspFI | CCCAGC | 1 cut(s) | 1056 |
| PspGI | CCWGG | 1 cut(s) | 1975 |
| PspN4I | GGNNCC | 1 cut(s) | 279 |
| PspPI | GGNCC | 3 cut(s) | 574, 1698, 2590 |
| PspPPI | RGGWCCY | 1 cut(s) | 574 |
| PstI | CTGCAG | 1 cut(s) | 1035 |
| PsuI | RGATCY | 4 cut(s) | 277, 379, 419, 2653 |
| PsyI | GACNNNGTC | 1 cut(s) | 1430 |
| RsaI | GTAC | 6 cut(s) | 770, 961, 1353, 1500, 1885, 2141 |
| RsaNI | GTAC | 6 cut(s) | 769, 960, 1352, 1499, 1884, 2140 |
| RseI | CAYNNNNRTG | 4 cut(s) | 897, 1488, 2270, 2289 |
| SapI | GCTCTTC | 2 cut(s) | 411, 2503 |
| SatI | GCNGC | 3 cut(s) | 96, 144, 2584 |
| Sau96I | GGNCC | 3 cut(s) | 574, 1698, 2590 |
| SchI | GAGTC | 6 cut(s) | 709, 1447, 1568, 1742, 2216, 2597 |
| ScrFI | CCNGG | 2 cut(s) | 1977, 2409 |
| SduI | GDGCHC | 3 cut(s) | 792, 1227, 2169 |
| SfaNI | GCATC | 7 cut(s) | 260, 648, 693, 1311, 1578, 2341, 2758 |
| SfcI | CTRYAG | 2 cut(s) | 1031, 2391 |
| SfuI | TTCGAA | 2 cut(s) | 596, 1389 |
| SinI | GGWCC | 3 cut(s) | 574, 1698, 2590 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 897, 1488, 2270, 2289 |
| SmlI | CTYRAG | 2 cut(s) | 1072, 2723 |
| SmoI | CTYRAG | 2 cut(s) | 1072, 2723 |
| SseBI | AGGCCT | 2 cut(s) | 2530, 2695 |
| SsiI | CCGC | 6 cut(s) | 95, 487, 569, 1336, 1650, 2573 |
| SspI | AATATT | 3 cut(s) | 665, 2019, 2308 |
| SspMI | CTAG | 9 cut(s) | 248, 780, 1212, 1256, 1277, 1638, 2312, 2486, 2549 |
| StuI | AGGCCT | 2 cut(s) | 2530, 2695 |
| StyD4I | CCNGG | 2 cut(s) | 1975, 2407 |
| StyI | CCWWGG | 4 cut(s) | 1413, 1918, 2398, 2787 |
| TaaI | ACNGT | 6 cut(s) | 31, 431, 910, 1396, 2361, 2522 |
| TaiI | ACGT | 4 cut(s) | 1209, 2145, 2215, 2466 |
| TatI | WGTACW | 3 cut(s) | 768, 959, 1883 |
| TauI | GCSGC | 1 cut(s) | 98 |
| TfiI | GAWTC | 4 cut(s) | 110, 206, 340, 1408 |
| TscAI | CASTG | 3 cut(s) | 378, 2133, 2383 |
| TseFI | GTSAC | 4 cut(s) | 890, 1781, 2208, 2459 |
| TseI | GCWGC | 2 cut(s) | 143, 2583 |
| Tsp45I | GTSAC | 4 cut(s) | 890, 1781, 2208, 2459 |
| TspGWI | ACGGA | 5 cut(s) | 270, 1264, 1683, 1711, 2301 |
| TspRI | CASTG | 3 cut(s) | 378, 2133, 2383 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1430 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1486 |
| Vha464I | CTTAAG | 1 cut(s) | 1072 |
| VpaK11BI | GGWCC | 3 cut(s) | 574, 1698, 2590 |
| XapI | RAATTY | 4 cut(s) | 449, 1180, 1805, 2626 |
| XceI | RCATGY | 2 cut(s) | 522, 1789 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1487 |
| XmiI | GTMKAC | 1 cut(s) | 1538 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1677 |
| XspI | CTAG | 9 cut(s) | 248, 780, 1212, 1256, 1277, 1638, 2312, 2486, 2549 |
| ZraI | GACGTC | 1 cut(s) | 1207 |