RchiOBHm_Chr1g0370821

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
60222763 .. 60227902
5140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59496

Sequence Viewer

Length: 2502 bp
ATGACGTGTTTGCGATTGGACGAAAACCTGAAGAAAGCAGCTCTTATCTTGCGATCTATTACTGACCTCTTTTATATAATGGACATCATTATTCAACTTCACAGATCTGATTGTGATAAGTGTTCAGGTTTAATCAATAAATTTCGTCAGAGAAGAGGCTGTTGCTCCAAATTCCAGTTCATATGGAAGTATTTTTTAACAACGATAGCTAAGACGATTTGGTGGTCATACATCTTAATTGACATGTTAGCTATTCTCCCTCTTCCGCAGGTTCTAATTCTCCATTTCTTTTCGAAAATGAGGGGCTCAAGATCTTTAAATACAAGGAAGTTTATTATGAATTCTTTTGTTCTGATGCAATATGTGCCACGGGTTTTTCGCATCTACCAATTGTGCAAAGAGCCTAAAAAGTCTGTCCATGAAGAGAGTACTGCAATATGGGTTAAAGGTGTACTAAATTTGTTCATGTACATTCTTGCGAGTCATGTACTCGGAGCTGTATGGTATTTTTTGGCTGTCCAACGAATGACAATTTGCTGGCAGTATGCTTGTCGAAATGAAAACAAATGTGACACTAGTACTTTTAGCTGTTATGACCATGGTTCATTGATAAATATCACATTTATGAATGATATATGCCCCATTGATCCACCGAATGCAAAGCTTTTCGACTTTGGTATATTTCTTAGTTTGTTTCAATCTGGTATACCAAGGTCAACAAGTTTTCTACAGAAGTTCTCGAATTGCTTTTGTTGGGGCTTGCGCAATTTGAGTTCTCTCGGCTCAAACCTCCAGCCCAGTACGAATACATGGGAAAACTTCTTTGTGGCTTTTGTTTCTATAATGGGCTTGCTGCTGTTTATATACCTCATTGGAAATTTGCAGACATATATGCAGTTGGAGACTACAAGAATAGAGTCGCATAGACACAAGATGAAAATTAAACGAAAGATACAAGAGATAGGTCCGGAGATAGAATTGTGGTTATCTAAATCTGGCTTGCCTAAGAATCCAAAGGACAAAATAAAGCCGCAGATCATGGAAAAGGTACAACAAGTACTTGCAGAAAACAAGAATGCCGGTTTAGATCATATCATCTCTATTCTTCCCTCGGAACTTCGAAGGTATATCGAAAGTTTTTCGCCTTGGAATAGACTGAAACAGGAGCTAGTGCTTCAAACTATGGATGAAGAAGTGCTGAAAGTAATACGTGAACATCTTAAACCGATGAAGTATACTAAGAACAATGTCATTATTCAAGAGAATGAACCACTTGAAATGATGCTCATCATTGTGGAAGGACATCTAAGTATTGAAAAGAGAGATTACGCTAGTAATACACAGCGGGGTCCAACAGAATTATATGGAGAGAAACTTCTAACTTGGCCTTCATCAAGCTTCTTTCCTGGCAAATTACCCACGGCAGCAGAGTCTGCTAGGGCAATTGATGATGTTGAAGCCCTTGTTCTCATGGCCGACGACATGAAGAGTGTAGGCATTAAATTCAGGTCGCAGTTTACAGATTTCGCCAAATTCAAAGGTAGATTGTCTATTCATCTGGAAACTTCTACACCAGCACTTAGAATCTACACTGCAGAAGAACTTAAGAAGGCAACAAACAATTATCACGAAAGTGGAATCGTTGGTGCAGGAAGCTCTGCGACAATTCACAAAGGAATACTACCAAATCATGAAACAGCGGTTGCCATAAAGAAGTTCAAAAAATTTTCTGAATCATCCTACACTCATCAGGATGTAATAGATGAGATAGTTCTCAATTCTCGTCTGAACCACAAAAATGTGGTGAGGCTCTTAGGTTGTTGTCTAGAGTCAGAAGTACCTTCAATGGTTTTTGAGTTCATCCCCAATGGCACTCTTGCTGAGCATGTTTATGACAAAAGCAAAGGATCAACAGTTACACTCCCATTGGAATTACGAATGAAGATAGCAGCGGAAACTGCAGGAGCACTAGCATACTTGCACTCCCTCACTATGCCAATCATACACCGAGATGTGAAGACAACAAGTATTCTGTTAGATGAAAATTACAGGGCAAAACTGATAGACTTTGGGATTTCACGAGTGTTGACCTCTATGGATAAAACTCATATATCAACTAATGTGAAAGGATCATTCGGATACTTGGACCCTGAATATTATCGTAGACAGGAACTAACACCGAAGAGTGACGTCTACAGCTTTGGAGTTGTCCTTGGGGAGCTACTAACAAGCAGAAAGGCAATTAATCGTGAGGAACCTTGCAAGAGAATTGCAGTCCTTGCGGAGTTGCTTAAAAGTTCAGTGGAAAAGGGTCTCTTGGACCAAATTCTTGATCAACAAATTGTGAATGGGGAAAATATTGAGACCGCAAAAAAAGTTGCTGATCTCGCATACAGATGTTTAAGGGACAGTGGGGTGTCTAGGCCTTCCATGAAAGAAGTAGCAACAGAACTCGAGGGATTGGTGGGAGTTATTGCAAATAATCAAATTAATTTTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

833

Amino Acids

95.16

Weight (kDa)

8.98

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 12 - 302 2.4e-07 Ion transport protein
Pkinase PF00069 542 - 815 1e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 548 - 818 3.8e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2193
Acc16I TGCGCA 1 cut(s) 764
Acc36I ACCTGC 1 cut(s) 259
AccI GTMKAC 4 cut(s) 706, 1235, 2164, 2193
AccIII TCCGGA 1 cut(s) 967
AciI CCGC 7 cut(s) 266, 1031, 1345, 1700, 1952, 2282, 2367
AclWI GGATC 3 cut(s) 641, 1915, 2137
AcoI YGGCCR 1 cut(s) 1473
AcsI RAATTY 9 cut(s) 140, 170, 340, 457, 877, 1502, 1532, 1724, 2325
AcuI CTGAAG 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 2190
AfaI GTAC 9 cut(s) 430, 453, 470, 489, 580, 802, 1050, 1059, 1839
AflII CTTAAG 1 cut(s) 1604
AflIII ACRYGT 2 cut(s) 5, 243
AhlI ACTAGT 1 cut(s) 575
AjiI CACGTC 1 cut(s) 6
AjnI CCWGG 1 cut(s) 1405
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AleI CACNNNNGTG 1 cut(s) 1632
Alw21I GWGCWC 1 cut(s) 1969
Alw26I GTCTC 3 cut(s) 896, 2318, 2357
AlwI GGATC 3 cut(s) 641, 1915, 2137
AlwNI CAGNNNCTG 1 cut(s) 1433
Ama87I CYCGRG 1 cut(s) 2453
Aor13HI TCCGGA 1 cut(s) 967
AoxI GGCC 3 cut(s) 1385, 1473, 2423
ApeKI GCWGC 4 cut(s) 38, 853, 1424, 1949
ApoI RAATTY 9 cut(s) 140, 170, 340, 457, 877, 1502, 1532, 1724, 2325
AseI ATTAAT 2 cut(s) 2244, 2490
AspLEI GCGC 1 cut(s) 765
AspS9I GGNCC 4 cut(s) 965, 1349, 2146, 2320
AsuHPI GGTGA 1 cut(s) 1816
AsuII TTCGAA 2 cut(s) 293, 1120
AvaI CYCGRG 1 cut(s) 2453
AvaII GGWCC 4 cut(s) 965, 1349, 2146, 2320
BanII GRGCYC 1 cut(s) 308
BauI CACGAG 1 cut(s) 2079
BbsI GAAGAC 1 cut(s) 2024
Bbv12I GWGCWC 1 cut(s) 1969
BbvI GCAGC 4 cut(s) 50, 840, 1436, 1961
BceAI ACGGC 1 cut(s) 1437
BciT130I CCWGG 1 cut(s) 1407
BciVI GTATCC 1 cut(s) 2132
BclI TGATCA 1 cut(s) 2332
BcoDI GTCTC 3 cut(s) 896, 2318, 2357
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 7 cut(s) 576, 1169, 1332, 1437, 1826, 1970, 2421
BfmI CTRYAG 4 cut(s) 728, 1593, 1959, 2194
BfrI CTTAAG 1 cut(s) 1604
BfuAI ACCTGC 1 cut(s) 259
BfuI GTATCC 1 cut(s) 2132
BglII AGATCT 2 cut(s) 104, 311
BisI GCNGC 5 cut(s) 39, 854, 1031, 1425, 1950
BlpI GCTNAGC 1 cut(s) 1881
BlsI GCNGC 5 cut(s) 40, 855, 1032, 1426, 1951
BmcAI AGTACT 3 cut(s) 430, 580, 1059
Bme1390I CCNGG 1 cut(s) 1407
Bme18I GGWCC 4 cut(s) 965, 1349, 2146, 2320
BmeT110I CYCGRG 1 cut(s) 2453
BmgBI CACGTC 1 cut(s) 6
BmgT120I GGNCC 4 cut(s) 965, 1349, 2146, 2320
BmiI GGNNCC 3 cut(s) 1350, 2148, 2256
BmrFI CCNGG 1 cut(s) 1407
BmrI ACTGGG 1 cut(s) 792
BmsI GCATC 3 cut(s) 345, 390, 1272
BmuI ACTGGG 1 cut(s) 792
BpiI GAAGAC 1 cut(s) 2024
BpmI CTGGAG 1 cut(s) 776
Bpu1102I GCTNAGC 1 cut(s) 1881
Bpu14I TTCGAA 2 cut(s) 293, 1120
BpuEI CTTGAG 1 cut(s) 292
BsaAI YACGTR 1 cut(s) 1211
BsaBI GATNNNNATC 2 cut(s) 614, 1286
BsaHI GRCGYC 1 cut(s) 2190
BsaI GGTCTC 2 cut(s) 2318, 2357
BsaJI CCNNGG 7 cut(s) 368, 598, 710, 1110, 1145, 1419, 2212
BsaWI WCCGGW 1 cut(s) 967
BsaXI ACNNNNNCTCC 2 cut(s) 1967, 1997
Bse118I RCCGGY 1 cut(s) 1079
Bse1I ACTGG 2 cut(s) 175, 798
Bse8I GATNNNNATC 2 cut(s) 614, 1286
BseAI TCCGGA 1 cut(s) 967
BseBI CCWGG 1 cut(s) 1407
BseDI CCNNGG 7 cut(s) 368, 598, 710, 1110, 1145, 1419, 2212
BseGI GGATG 4 cut(s) 1192, 1736, 1759, 1860
BseJI GATNNNNATC 2 cut(s) 614, 1286
BseMII CTCAG 1 cut(s) 1872
BseNI ACTGG 2 cut(s) 175, 798
BseXI GCAGC 4 cut(s) 50, 840, 1436, 1961
BsgI GTGCAG 1 cut(s) 1668
BshFI GGCC 3 cut(s) 1387, 1475, 2425
BsiHKAI GWGCWC 1 cut(s) 1969
BsiHKCI CYCGRG 1 cut(s) 2453
BsiSI CCGG 2 cut(s) 968, 1080
BslFI GGGAC 1 cut(s) 2420
BsmAI GTCTC 3 cut(s) 896, 2318, 2357
BsmFI GGGAC 1 cut(s) 2420
BsmI GAATGC 2 cut(s) 661, 1081
BsnI GGCC 3 cut(s) 1387, 1475, 2425
Bso31I GGTCTC 2 cut(s) 2318, 2357
BsoBI CYCGRG 1 cut(s) 2453
Bsp119I TTCGAA 2 cut(s) 293, 1120
Bsp1286I GDGCHC 2 cut(s) 308, 1969
Bsp13I TCCGGA 1 cut(s) 967
Bsp1407I TGTACA 1 cut(s) 468
Bsp1720I GCTNAGC 1 cut(s) 1881
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 7 cut(s) 266, 1031, 1345, 1700, 1952, 2282, 2367
BspANI GGCC 3 cut(s) 1387, 1475, 2425
BspCNI CTCAG 1 cut(s) 1873
BspEI TCCGGA 1 cut(s) 967
BspHI TCATGA 1 cut(s) 1690
BspLI GGNNCC 3 cut(s) 1350, 2148, 2256
BspMAI CTGCAG 2 cut(s) 1597, 1963
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 3 cut(s) 641, 1915, 2137
BspT104I TTCGAA 2 cut(s) 293, 1120
BspTI CTTAAG 1 cut(s) 1604
BspTNI GGTCTC 2 cut(s) 2318, 2357
BsrFI RCCGGY 1 cut(s) 1079
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 2 cut(s) 175, 798
BssAI RCCGGY 1 cut(s) 1079
BssECI CCNNGG 7 cut(s) 368, 598, 710, 1110, 1145, 1419, 2212
BssNAI GTATAC 2 cut(s) 707, 1236
BssNI GRCGYC 1 cut(s) 2190
BssSI CACGAG 1 cut(s) 2079
BssT1I CCWWGG 4 cut(s) 598, 710, 1145, 2212
Bst1107I GTATAC 2 cut(s) 707, 1236
Bst2BI CACGAG 1 cut(s) 2079
Bst2UI CCWGG 1 cut(s) 1407
Bst4CI ACNGT 2 cut(s) 1915, 2411
Bst6I CTCTTC 5 cut(s) 148, 267, 417, 1481, 2177
BstACI GRCGYC 1 cut(s) 2190
BstAFI CTTAAG 1 cut(s) 1604
BstAPI GCANNNNNTGC 3 cut(s) 364, 1433, 2279
BstAUI TGTACA 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 1211
BstBI TTCGAA 2 cut(s) 293, 1120
BstC8I GCNNGC 4 cut(s) 539, 761, 851, 1001
BstDEI CTNAG 8 cut(s) 210, 686, 1005, 1239, 1307, 1580, 1813, 1881
BstDSI CCRYGG 3 cut(s) 368, 598, 1419
BstF5I GGATG 4 cut(s) 1192, 1736, 1759, 1860
BstHHI GCGC 1 cut(s) 765
BstMAI GTCTC 3 cut(s) 896, 2318, 2357
BstMWI GCNNNNNNNGC 5 cut(s) 364, 1433, 1958, 2279, 2387
BstNI CCWGG 1 cut(s) 1407
BstNSI RCATGY 2 cut(s) 247, 1889
BstSCI CCNGG 1 cut(s) 1405
BstSFI CTRYAG 4 cut(s) 728, 1593, 1959, 2194
BstV1I GCAGC 4 cut(s) 50, 840, 1436, 1961
BstV2I GAAGAC 1 cut(s) 2024
BstX2I RGATCY 2 cut(s) 104, 311
BstYI RGATCY 2 cut(s) 104, 311
BstZ17I GTATAC 2 cut(s) 707, 1236
BsuI GTATCC 1 cut(s) 2132
BsuRI GGCC 3 cut(s) 1387, 1475, 2425
BtgI CCRYGG 3 cut(s) 368, 598, 1419
BtrI CACGTC 1 cut(s) 6
BtsCI GGATG 4 cut(s) 1192, 1736, 1759, 1860
BtsI GCAGTG 1 cut(s) 1590
BtsIMutI CAGTG 3 cut(s) 1590, 2307, 2416
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 4 cut(s) 539, 761, 851, 1001
CaiI CAGNNNCTG 1 cut(s) 1433
CciI TCATGA 1 cut(s) 1690
CfoI GCGC 1 cut(s) 765
Cfr10I RCCGGY 1 cut(s) 1079
Cfr13I GGNCC 4 cut(s) 965, 1349, 2146, 2320
Csp6I GTAC 9 cut(s) 429, 452, 469, 488, 579, 801, 1049, 1058, 1838
CviQI GTAC 9 cut(s) 429, 452, 469, 488, 579, 801, 1049, 1058, 1838
DdeI CTNAG 8 cut(s) 210, 686, 1005, 1239, 1307, 1580, 1813, 1881
DraI TTTAAA 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 1473
Eam1104I CTCTTC 5 cut(s) 148, 267, 417, 1481, 2177
EarI CTCTTC 5 cut(s) 148, 267, 417, 1481, 2177
Eco130I CCWWGG 4 cut(s) 598, 710, 1145, 2212
Eco147I AGGCCT 1 cut(s) 2425
Eco24I GRGCYC 1 cut(s) 308
Eco31I GGTCTC 2 cut(s) 2318, 2357
Eco47I GGWCC 4 cut(s) 965, 1349, 2146, 2320
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 2453
EcoRI GAATTC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 1405
EcoT14I CCWWGG 4 cut(s) 598, 710, 1145, 2212
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 4 cut(s) 598, 710, 1145, 2212
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 2300, 2332
FaqI GGGAC 1 cut(s) 2420
FauI CCCGC 1 cut(s) 1338
FauNDI CATATG 1 cut(s) 182
FbaI TGATCA 1 cut(s) 2332
FblI GTMKAC 4 cut(s) 706, 1235, 2164, 2193
Fnu4HI GCNGC 5 cut(s) 39, 854, 1031, 1425, 1950
FokI GGATG 4 cut(s) 1199, 1723, 1766, 1847
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 5 cut(s) 39, 854, 1031, 1425, 1950
FspBI CTAG 7 cut(s) 576, 1169, 1332, 1437, 1826, 1970, 2421
FspI TGCGCA 1 cut(s) 764
GlaI GCGC 1 cut(s) 764
GluI GCNGC 5 cut(s) 39, 854, 1031, 1425, 1950
GsuI CTGGAG 1 cut(s) 776
HaeIII GGCC 3 cut(s) 1387, 1475, 2425
HapII CCGG 2 cut(s) 968, 1080
HhaI GCGC 1 cut(s) 765
Hin1I GRCGYC 1 cut(s) 2190
Hin6I GCGC 1 cut(s) 763
HinP1I GCGC 1 cut(s) 763
HincII GTYRAC 2 cut(s) 717, 2088
HindII GTYRAC 2 cut(s) 717, 2088
HindIII AAGCTT 2 cut(s) 662, 1396
HinfI GANTC 8 cut(s) 481, 917, 1009, 1430, 1584, 1638, 1733, 1829
HpaII CCGG 2 cut(s) 968, 1080
HphI GGTGA 1 cut(s) 1816
Hpy166II GTNNAC 9 cut(s) 452, 707, 717, 1214, 1236, 1518, 2088, 2165, 2194
Hpy188I TCNGA 9 cut(s) 109, 150, 354, 494, 1114, 1732, 1788, 1834, 2138
Hpy8I GTNNAC 9 cut(s) 452, 707, 717, 1214, 1236, 1518, 2088, 2165, 2194
Hpy99I CGWCG 1 cut(s) 1481
HpyAV CCTTC 6 cut(s) 1116, 1292, 1398, 1603, 1851, 2436
HpyCH4III ACNGT 2 cut(s) 1915, 2411
HpyCH4IV ACGT 3 cut(s) 5, 1210, 2190
HpyF10VI GCNNNNNNNGC 5 cut(s) 364, 1433, 1958, 2279, 2387
HpyF3I CTNAG 8 cut(s) 210, 686, 1005, 1239, 1307, 1580, 1813, 1881
HpySE526I ACGT 3 cut(s) 5, 1210, 2190
Hsp92I GRCGYC 1 cut(s) 2190
HspAI GCGC 1 cut(s) 763
Kpn2I TCCGGA 1 cut(s) 967
Ksp22I TGATCA 1 cut(s) 2332
LmnI GCTCC 5 cut(s) 170, 494, 1165, 1964, 2218
Lsp1109I GCAGC 4 cut(s) 50, 840, 1436, 1961
LweI GCATC 3 cut(s) 345, 390, 1272
MaeI CTAG 7 cut(s) 576, 1169, 1332, 1437, 1826, 1970, 2421
MaeII ACGT 3 cut(s) 5, 1210, 2190
MaeIII GTNAC 3 cut(s) 569, 1915, 2186
MfeI CAATTG 2 cut(s) 389, 1443
MflI RGATCY 2 cut(s) 104, 311
MhlI GDGCHC 2 cut(s) 308, 1969
MlyI GAGTC 4 cut(s) 490, 926, 1439, 1838
MmeI TCCRAC 3 cut(s) 544, 879, 1376
MroI TCCGGA 1 cut(s) 967
MslI CAYNNNNRTG 8 cut(s) 623, 1292, 1632, 1752, 1797, 1890, 2010, 2395
MspA1I CMGCKG 3 cut(s) 1345, 1700, 1952
MspCI CTTAAG 1 cut(s) 1604
MspI CCGG 2 cut(s) 968, 1080
MspR9I CCNGG 1 cut(s) 1407
MunI CAATTG 2 cut(s) 389, 1443
Mva1269I GAATGC 2 cut(s) 661, 1081
MvaI CCWGG 1 cut(s) 1407
MwoI GCNNNNNNNGC 5 cut(s) 364, 1433, 1958, 2279, 2387
NcoI CCATGG 1 cut(s) 598
NdeI CATATG 1 cut(s) 182
NlaIV GGNNCC 3 cut(s) 1350, 2148, 2256
NmeAIII GCCGAG 1 cut(s) 759
NmuCI GTSAC 2 cut(s) 569, 2186
NsbI TGCGCA 1 cut(s) 764
NspI RCATGY 2 cut(s) 247, 1889
NspV TTCGAA 2 cut(s) 293, 1120
OliI CACNNNNGTG 1 cut(s) 1632
PaeR7I CTCGAG 1 cut(s) 2453
PagI TCATGA 1 cut(s) 1690
PceI AGGCCT 1 cut(s) 2425
PciI ACATGT 1 cut(s) 243
PctI GAATGC 2 cut(s) 661, 1081
PfeI GAWTC 4 cut(s) 1009, 1584, 1638, 1733
PkrI GCNGC 5 cut(s) 40, 855, 1032, 1426, 1951
PleI GAGTC 4 cut(s) 489, 925, 1438, 1837
PpsI GAGTC 4 cut(s) 489, 925, 1438, 1837
Ppu21I YACGTR 1 cut(s) 1211
PscI ACATGT 1 cut(s) 243
PshBI ATTAAT 2 cut(s) 2244, 2490
Psp6I CCWGG 1 cut(s) 1405
PspGI CCWGG 1 cut(s) 1405
PspN4I GGNNCC 3 cut(s) 1350, 2148, 2256
PspPI GGNCC 4 cut(s) 965, 1349, 2146, 2320
PspXI VCTCGAGB 1 cut(s) 2453
PstI CTGCAG 2 cut(s) 1597, 1963
PstNI CAGNNNCTG 1 cut(s) 1433
PsuI RGATCY 2 cut(s) 104, 311
RsaI GTAC 9 cut(s) 430, 453, 470, 489, 580, 802, 1050, 1059, 1839
RsaNI GTAC 9 cut(s) 429, 452, 469, 488, 579, 801, 1049, 1058, 1838
RseI CAYNNNNRTG 8 cut(s) 623, 1292, 1632, 1752, 1797, 1890, 2010, 2395
SatI GCNGC 5 cut(s) 39, 854, 1031, 1425, 1950
Sau96I GGNCC 4 cut(s) 965, 1349, 2146, 2320
ScaI AGTACT 3 cut(s) 430, 580, 1059
SchI GAGTC 4 cut(s) 490, 926, 1439, 1838
ScrFI CCNGG 1 cut(s) 1407
SduI GDGCHC 2 cut(s) 308, 1969
SfaNI GCATC 3 cut(s) 345, 390, 1272
SfcI CTRYAG 4 cut(s) 728, 1593, 1959, 2194
Sfr274I CTCGAG 1 cut(s) 2453
SfuI TTCGAA 2 cut(s) 293, 1120
SinI GGWCC 4 cut(s) 965, 1349, 2146, 2320
SlaI CTCGAG 1 cut(s) 2453
SmiMI CAYNNNNRTG 8 cut(s) 623, 1292, 1632, 1752, 1797, 1890, 2010, 2395
SmlI CTYRAG 3 cut(s) 307, 1604, 2453
SmoI CTYRAG 3 cut(s) 307, 1604, 2453
SpeI ACTAGT 1 cut(s) 575
SseBI AGGCCT 1 cut(s) 2425
SsiI CCGC 7 cut(s) 266, 1031, 1345, 1700, 1952, 2282, 2367
SspI AATATT 2 cut(s) 2156, 2359
SspMI CTAG 7 cut(s) 576, 1169, 1332, 1437, 1826, 1970, 2421
StuI AGGCCT 1 cut(s) 2425
StyD4I CCNGG 1 cut(s) 1405
StyI CCWWGG 4 cut(s) 598, 710, 1145, 2212
TaaI ACNGT 2 cut(s) 1915, 2411
TaiI ACGT 3 cut(s) 8, 1213, 2193
TaqI TCGA 7 cut(s) 293, 553, 669, 740, 1120, 1131, 2454
TatI WGTACW 6 cut(s) 428, 451, 468, 487, 578, 1057
TauI GCSGC 1 cut(s) 1033
TfiI GAWTC 4 cut(s) 1009, 1584, 1638, 1733
TscAI CASTG 3 cut(s) 1597, 2307, 2416
TseFI GTSAC 2 cut(s) 569, 2186
TseI GCWGC 4 cut(s) 38, 853, 1424, 1949
Tsp45I GTSAC 2 cut(s) 569, 2186
TspRI CASTG 3 cut(s) 1597, 2307, 2416
Vha464I CTTAAG 1 cut(s) 1604
VpaK11BI GGWCC 4 cut(s) 965, 1349, 2146, 2320
VspI ATTAAT 2 cut(s) 2244, 2490
XapI RAATTY 9 cut(s) 140, 170, 340, 457, 877, 1502, 1532, 1724, 2325
XbaI TCTAGA 1 cut(s) 1825
XceI RCATGY 2 cut(s) 247, 1889
XhoI CTCGAG 1 cut(s) 2453
XmiI GTMKAC 4 cut(s) 706, 1235, 2164, 2193
XspI CTAG 7 cut(s) 576, 1169, 1332, 1437, 1826, 1970, 2421
ZraI GACGTC 1 cut(s) 2191
ZrmI AGTACT 3 cut(s) 430, 580, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.