Cyclic nucleotide-gated ion channel 1-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RPE65 | PF03055 | 72 - 613 | 1.3e-89 | Retinal pigment epithelial membrane protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 810, 1146 |
| AatII | GACGTC | 2 cut(s) | 79, 1026 |
| Acc16I | TGCGCA | 1 cut(s) | 1610 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 486 |
| AccBSI | CCGCTC | 1 cut(s) | 1763 |
| AccIII | TCCGGA | 1 cut(s) | 290 |
| AciI | CCGC | 6 cut(s) | 186, 269, 308, 490, 621, 1763 |
| AclWI | GGATC | 3 cut(s) | 326, 1424, 1463 |
| AcoI | YGGCCR | 1 cut(s) | 183 |
| AcsI | RAATTY | 6 cut(s) | 410, 899, 910, 935, 1237, 1807 |
| AcuI | CTGAAG | 3 cut(s) | 307, 542, 773 |
| AcvI | CACGTG | 1 cut(s) | 486 |
| AcyI | GRCGYC | 2 cut(s) | 76, 1023 |
| AfaI | GTAC | 3 cut(s) | 767, 1346, 1514 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 192, 359, 486, 502, 1093, 1387 |
| AflIII | ACRYGT | 2 cut(s) | 483, 1198 |
| AgeI | ACCGGT | 1 cut(s) | 1028 |
| AgsI | TTSAA | 8 cut(s) | 641, 909, 1172, 1250, 1596, 1721, 1749, 1790 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1790 |
| AhlI | ACTAGT | 2 cut(s) | 575, 986 |
| AjiI | CACGTC | 1 cut(s) | 153 |
| AjnI | CCWGG | 1 cut(s) | 1386 |
| AleI | CACNNNNGTG | 1 cut(s) | 551 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 188, 220 |
| AluBI | AGCT | 8 cut(s) | 588, 676, 803, 1018, 1175, 1259, 1529, 1585 |
| AluI | AGCT | 8 cut(s) | 588, 676, 803, 1018, 1175, 1259, 1529, 1585 |
| Alw21I | GWGCWC | 2 cut(s) | 72, 468 |
| Alw26I | GTCTC | 1 cut(s) | 220 |
| Alw44I | GTGCAC | 1 cut(s) | 68 |
| AlwI | GGATC | 3 cut(s) | 326, 1424, 1463 |
| Aor13HI | TCCGGA | 1 cut(s) | 290 |
| AoxI | GGCC | 2 cut(s) | 183, 1836 |
| ApaLI | GTGCAC | 1 cut(s) | 68 |
| ApeKI | GCWGC | 6 cut(s) | 740, 1070, 1192, 1500, 1523, 1526 |
| ApoI | RAATTY | 6 cut(s) | 410, 899, 910, 935, 1237, 1807 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 255, 287 |
| AsiGI | ACCGGT | 1 cut(s) | 1028 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 935 |
| AspLEI | GCGC | 1 cut(s) | 1611 |
| AspS9I | GGNCC | 4 cut(s) | 271, 311, 1330, 1836 |
| AsuC2I | CCSGG | 2 cut(s) | 315, 473 |
| AsuHPI | GGTGA | 7 cut(s) | 39, 487, 565, 734, 1018, 1370, 1591 |
| AvaII | GGWCC | 3 cut(s) | 271, 311, 1330 |
| AxyI | CCTNAGG | 1 cut(s) | 374 |
| BaeGI | GKGCMC | 1 cut(s) | 72 |
| BanII | GRGCYC | 1 cut(s) | 243 |
| BbrPI | CACGTG | 1 cut(s) | 486 |
| Bbv12I | GWGCWC | 2 cut(s) | 72, 468 |
| BbvI | GCAGC | 6 cut(s) | 752, 1082, 1179, 1512, 1535, 1538 |
| BccI | CCATC | 7 cut(s) | 110, 353, 386, 673, 710, 1403, 1406 |
| BceAI | ACGGC | 1 cut(s) | 382 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 77, 111 |
| BciT130I | CCWGG | 1 cut(s) | 1388 |
| BciVI | GTATCC | 2 cut(s) | 649, 1399 |
| BclI | TGATCA | 1 cut(s) | 949 |
| BcnI | CCSGG | 2 cut(s) | 315, 473 |
| BcoDI | GTCTC | 1 cut(s) | 220 |
| BcuI | ACTAGT | 2 cut(s) | 575, 986 |
| BfaI | CTAG | 4 cut(s) | 161, 576, 987, 1089 |
| BfuI | GTATCC | 2 cut(s) | 649, 1399 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 182 |
| BisI | GCNGC | 8 cut(s) | 186, 741, 1071, 1193, 1501, 1524, 1527, 1764 |
| BlsI | GCNGC | 8 cut(s) | 187, 742, 1072, 1194, 1502, 1525, 1528, 1765 |
| Bme1390I | CCNGG | 3 cut(s) | 315, 473, 1388 |
| Bme18I | GGWCC | 3 cut(s) | 271, 311, 1330 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1790 |
| BmgBI | CACGTC | 1 cut(s) | 153 |
| BmgT120I | GGNCC | 4 cut(s) | 271, 311, 1330, 1836 |
| BmiI | GGNNCC | 6 cut(s) | 273, 312, 494, 627, 1332, 1669 |
| BmrFI | CCNGG | 3 cut(s) | 315, 473, 1388 |
| BmsI | GCATC | 6 cut(s) | 163, 336, 507, 771, 808, 1759 |
| BpuMI | CCSGG | 2 cut(s) | 315, 473 |
| BsaAI | YACGTR | 1 cut(s) | 486 |
| BsaHI | GRCGYC | 2 cut(s) | 76, 1023 |
| BsaJI | CCNNGG | 5 cut(s) | 180, 314, 334, 549, 1121 |
| BsaWI | WCCGGW | 4 cut(s) | 64, 290, 643, 1028 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 522, 552 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 192, 359, 486, 502, 1093, 1387 |
| Bse118I | RCCGGY | 1 cut(s) | 1028 |
| Bse1I | ACTGG | 4 cut(s) | 202, 1332, 1450, 1839 |
| Bse21I | CCTNAGG | 1 cut(s) | 374 |
| Bse3DI | GCAATG | 3 cut(s) | 1041, 1213, 1550 |
| BseAI | TCCGGA | 1 cut(s) | 290 |
| BseBI | CCWGG | 1 cut(s) | 1388 |
| BseDI | CCNNGG | 5 cut(s) | 180, 314, 334, 549, 1121 |
| BseGI | GGATG | 5 cut(s) | 334, 688, 739, 942, 1231 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 192, 359, 486, 502, 1093, 1387 |
| BseMI | GCAATG | 3 cut(s) | 1041, 1213, 1550 |
| BseMII | CTCAG | 2 cut(s) | 388, 438 |
| BseNI | ACTGG | 4 cut(s) | 202, 1332, 1450, 1839 |
| BseRI | GAGGAG | 2 cut(s) | 543, 721 |
| BseSI | GKGCMC | 1 cut(s) | 72 |
| BseXI | GCAGC | 6 cut(s) | 752, 1082, 1179, 1512, 1535, 1538 |
| BseYI | CCCAGC | 1 cut(s) | 588 |
| Bsh1285I | CGRYCG | 1 cut(s) | 663 |
| BshFI | GGCC | 2 cut(s) | 185, 1838 |
| BshTI | ACCGGT | 1 cut(s) | 1028 |
| BsiEI | CGRYCG | 1 cut(s) | 663 |
| BsiHKAI | GWGCWC | 2 cut(s) | 72, 468 |
| BsiSI | CCGG | 6 cut(s) | 65, 291, 314, 473, 644, 1029 |
| BslFI | GGGAC | 4 cut(s) | 209, 257, 324, 1778 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 192, 359, 486, 502, 1093, 1387 |
| BsmAI | GTCTC | 1 cut(s) | 220 |
| BsmBI | CGTCTC | 1 cut(s) | 220 |
| BsmFI | GGGAC | 4 cut(s) | 209, 257, 324, 1778 |
| BsmI | GAATGC | 1 cut(s) | 188 |
| BsnI | GGCC | 2 cut(s) | 185, 1838 |
| Bsp1286I | GDGCHC | 3 cut(s) | 72, 243, 468 |
| Bsp13I | TCCGGA | 1 cut(s) | 290 |
| Bsp143I | GATC | 5 cut(s) | 318, 660, 949, 1416, 1455 |
| BspACI | CCGC | 6 cut(s) | 186, 269, 308, 490, 621, 1763 |
| BspANI | GGCC | 2 cut(s) | 185, 1838 |
| BspCNI | CTCAG | 2 cut(s) | 387, 439 |
| BspEI | TCCGGA | 1 cut(s) | 290 |
| BspHI | TCATGA | 1 cut(s) | 964 |
| BspLI | GGNNCC | 6 cut(s) | 273, 312, 494, 627, 1332, 1669 |
| BspPI | GGATC | 3 cut(s) | 326, 1424, 1463 |
| BspQI | GCTCTTC | 1 cut(s) | 456 |
| BsrBI | CCGCTC | 1 cut(s) | 1763 |
| BsrDI | GCAATG | 3 cut(s) | 1041, 1213, 1550 |
| BsrFI | RCCGGY | 1 cut(s) | 1028 |
| BsrI | ACTGG | 4 cut(s) | 202, 1332, 1450, 1839 |
| BssAI | RCCGGY | 1 cut(s) | 1028 |
| BssECI | CCNNGG | 5 cut(s) | 180, 314, 334, 549, 1121 |
| BssMI | GATC | 5 cut(s) | 318, 660, 949, 1416, 1455 |
| BssNI | GRCGYC | 2 cut(s) | 76, 1023 |
| BssT1I | CCWWGG | 1 cut(s) | 549 |
| Bst2UI | CCWGG | 1 cut(s) | 1388 |
| Bst4CI | ACNGT | 1 cut(s) | 338 |
| Bst6I | CTCTTC | 3 cut(s) | 215, 456, 518 |
| BstACI | GRCGYC | 2 cut(s) | 76, 1023 |
| BstBAI | YACGTR | 1 cut(s) | 486 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 10, 823 |
| BstDEI | CTNAG | 2 cut(s) | 374, 447 |
| BstDSI | CCRYGG | 2 cut(s) | 180, 334 |
| BstEII | GGTNACC | 1 cut(s) | 475 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1385 |
| BstF5I | GGATG | 5 cut(s) | 334, 688, 739, 942, 1231 |
| BstHHI | GCGC | 1 cut(s) | 1611 |
| BstKTI | GATC | 5 cut(s) | 321, 663, 952, 1419, 1458 |
| BstMAI | GTCTC | 1 cut(s) | 220 |
| BstMBI | GATC | 5 cut(s) | 318, 660, 949, 1416, 1455 |
| BstMCI | CGRYCG | 1 cut(s) | 663 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 182, 790, 980, 1769, 1778 |
| BstNI | CCWGG | 1 cut(s) | 1388 |
| BstNSI | RCATGY | 1 cut(s) | 1202 |
| BstPI | GGTNACC | 1 cut(s) | 475 |
| BstSCI | CCNGG | 3 cut(s) | 313, 471, 1386 |
| BstSLI | GKGCMC | 1 cut(s) | 72 |
| BstV1I | GCAGC | 6 cut(s) | 752, 1082, 1179, 1512, 1535, 1538 |
| BstX2I | RGATCY | 2 cut(s) | 318, 1416 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1402 |
| BstYI | RGATCY | 2 cut(s) | 318, 1416 |
| Bsu36I | CCTNAGG | 1 cut(s) | 374 |
| BsuI | GTATCC | 2 cut(s) | 649, 1399 |
| BsuRI | GGCC | 2 cut(s) | 185, 1838 |
| BtgI | CCRYGG | 2 cut(s) | 180, 334 |
| BtgZI | GCGATG | 1 cut(s) | 88 |
| BtrI | CACGTC | 1 cut(s) | 153 |
| BtsCI | GGATG | 5 cut(s) | 334, 688, 739, 942, 1231 |
| BtsIMutI | CAGTG | 4 cut(s) | 421, 702, 1086, 1457 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 10, 823 |
| CciI | TCATGA | 1 cut(s) | 964 |
| CfoI | GCGC | 1 cut(s) | 1611 |
| Cfr10I | RCCGGY | 1 cut(s) | 1028 |
| Cfr13I | GGNCC | 4 cut(s) | 271, 311, 1330, 1836 |
| Csp6I | GTAC | 3 cut(s) | 766, 1345, 1513 |
| CspAI | ACCGGT | 1 cut(s) | 1028 |
| CviAII | CATG | 6 cut(s) | 427, 849, 965, 1199, 1573, 1826 |
| CviQI | GTAC | 3 cut(s) | 766, 1345, 1513 |
| DdeI | CTNAG | 2 cut(s) | 374, 447 |
| DpnI | GATC | 5 cut(s) | 320, 662, 951, 1418, 1457 |
| DpnII | GATC | 5 cut(s) | 318, 660, 949, 1416, 1455 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1790 |
| EaeI | YGGCCR | 1 cut(s) | 183 |
| Eam1104I | CTCTTC | 3 cut(s) | 215, 456, 518 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1790 |
| EarI | CTCTTC | 3 cut(s) | 215, 456, 518 |
| Eco130I | CCWWGG | 1 cut(s) | 549 |
| Eco24I | GRGCYC | 1 cut(s) | 243 |
| Eco47I | GGWCC | 3 cut(s) | 271, 311, 1330 |
| Eco57I | CTGAAG | 3 cut(s) | 307, 542, 773 |
| Eco72I | CACGTG | 1 cut(s) | 486 |
| Eco81I | CCTNAGG | 1 cut(s) | 374 |
| Eco91I | GGTNACC | 1 cut(s) | 475 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1385 |
| EcoO65I | GGTNACC | 1 cut(s) | 475 |
| EcoRI | GAATTC | 2 cut(s) | 935, 1237 |
| EcoRII | CCWGG | 1 cut(s) | 1386 |
| EcoT14I | CCWWGG | 1 cut(s) | 549 |
| EcoT38I | GRGCYC | 1 cut(s) | 243 |
| ErhI | CCWWGG | 1 cut(s) | 549 |
| Esp3I | CGTCTC | 1 cut(s) | 220 |
| FaeI | CATG | 6 cut(s) | 430, 852, 968, 1202, 1576, 1829 |
| FaqI | GGGAC | 4 cut(s) | 209, 257, 324, 1778 |
| FatI | CATG | 6 cut(s) | 426, 848, 964, 1198, 1572, 1825 |
| FauI | CCCGC | 2 cut(s) | 301, 614 |
| FauNDI | CATATG | 2 cut(s) | 1567, 1613 |
| FbaI | TGATCA | 1 cut(s) | 949 |
| Fnu4HI | GCNGC | 8 cut(s) | 186, 741, 1071, 1193, 1501, 1524, 1527, 1764 |
| FokI | GGATG | 5 cut(s) | 341, 695, 746, 929, 1238 |
| FriOI | GRGCYC | 1 cut(s) | 243 |
| Fsp4HI | GCNGC | 8 cut(s) | 186, 741, 1071, 1193, 1501, 1524, 1527, 1764 |
| FspAI | RTGCGCAY | 1 cut(s) | 1610 |
| FspBI | CTAG | 4 cut(s) | 161, 576, 987, 1089 |
| FspI | TGCGCA | 1 cut(s) | 1610 |
| GlaI | GCGC | 1 cut(s) | 1610 |
| GluI | GCNGC | 8 cut(s) | 186, 741, 1071, 1193, 1501, 1524, 1527, 1764 |
| GsaI | CCCAGC | 1 cut(s) | 592 |
| HaeIII | GGCC | 2 cut(s) | 185, 1838 |
| HapII | CCGG | 6 cut(s) | 65, 291, 314, 473, 644, 1029 |
| HhaI | GCGC | 1 cut(s) | 1611 |
| Hin1I | GRCGYC | 2 cut(s) | 76, 1023 |
| Hin1II | CATG | 6 cut(s) | 430, 852, 968, 1202, 1576, 1829 |
| Hin6I | GCGC | 1 cut(s) | 1609 |
| HinP1I | GCGC | 1 cut(s) | 1609 |
| HincII | GTYRAC | 1 cut(s) | 156 |
| HindII | GTYRAC | 1 cut(s) | 156 |
| HindIII | AAGCTT | 2 cut(s) | 1016, 1257 |
| HinfI | GANTC | 6 cut(s) | 247, 692, 905, 961, 1246, 1745 |
| HpaII | CCGG | 6 cut(s) | 65, 291, 314, 473, 644, 1029 |
| HphI | GGTGA | 7 cut(s) | 39, 487, 565, 734, 1018, 1370, 1591 |
| Hpy166II | GTNNAC | 5 cut(s) | 70, 156, 1084, 1284, 1325 |
| Hpy188I | TCNGA | 5 cut(s) | 229, 497, 1243, 1468, 1672 |
| Hpy188III | TCNNGA | 8 cut(s) | 161, 274, 291, 439, 514, 664, 965, 1151 |
| Hpy8I | GTNNAC | 5 cut(s) | 70, 156, 1084, 1284, 1325 |
| Hpy99I | CGWCG | 4 cut(s) | 78, 263, 280, 346 |
| HpyAV | CCTTC | 7 cut(s) | 25, 257, 297, 611, 661, 1188, 1344 |
| HpyCH4III | ACNGT | 1 cut(s) | 338 |
| HpyCH4IV | ACGT | 5 cut(s) | 76, 152, 485, 564, 1023 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 182, 790, 980, 1769, 1778 |
| HpyF3I | CTNAG | 2 cut(s) | 374, 447 |
| HpySE526I | ACGT | 5 cut(s) | 76, 152, 485, 564, 1023 |
| Hsp92I | GRCGYC | 2 cut(s) | 76, 1023 |
| Hsp92II | CATG | 6 cut(s) | 430, 852, 968, 1202, 1576, 1829 |
| HspAI | GCGC | 1 cut(s) | 1609 |
| Kpn2I | TCCGGA | 1 cut(s) | 290 |
| Ksp22I | TGATCA | 1 cut(s) | 949 |
| Kzo9I | GATC | 5 cut(s) | 318, 660, 949, 1416, 1455 |
| LguI | GCTCTTC | 1 cut(s) | 456 |
| LmnI | GCTCC | 2 cut(s) | 1180, 1760 |
| Lsp1109I | GCAGC | 6 cut(s) | 752, 1082, 1179, 1512, 1535, 1538 |
| LweI | GCATC | 6 cut(s) | 163, 336, 507, 771, 808, 1759 |
| MaeI | CTAG | 4 cut(s) | 161, 576, 987, 1089 |
| MaeII | ACGT | 5 cut(s) | 76, 152, 485, 564, 1023 |
| MaeIII | GTNAC | 6 cut(s) | 244, 362, 475, 1024, 1685, 1841 |
| MalI | GATC | 5 cut(s) | 320, 662, 951, 1418, 1457 |
| MbiI | CCGCTC | 1 cut(s) | 1763 |
| MboI | GATC | 5 cut(s) | 318, 660, 949, 1416, 1455 |
| MboII | GAAGA | 8 cut(s) | 202, 313, 473, 535, 872, 1644, 1685, 1688 |
| MfeI | CAATTG | 1 cut(s) | 1065 |
| MflI | RGATCY | 2 cut(s) | 318, 1416 |
| MhlI | GDGCHC | 3 cut(s) | 72, 243, 468 |
| MlyI | GAGTC | 1 cut(s) | 241 |
| MmeI | TCCRAC | 4 cut(s) | 520, 633, 904, 1085 |
| MroI | TCCGGA | 1 cut(s) | 290 |
| MroXI | GAANNNNTTC | 1 cut(s) | 935 |
| MseI | TTAA | 5 cut(s) | 777, 842, 915, 1349, 1445 |
| MslI | CAYNNNNRTG | 3 cut(s) | 551, 1112, 1577 |
| MspI | CCGG | 6 cut(s) | 65, 291, 314, 473, 644, 1029 |
| MspR9I | CCNGG | 3 cut(s) | 315, 473, 1388 |
| MunI | CAATTG | 1 cut(s) | 1065 |
| Mva1269I | GAATGC | 1 cut(s) | 188 |
| MvaI | CCWGG | 1 cut(s) | 1388 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 182, 790, 980, 1769, 1778 |
| NciI | CCSGG | 2 cut(s) | 315, 473 |
| NdeI | CATATG | 2 cut(s) | 1567, 1613 |
| NdeII | GATC | 5 cut(s) | 318, 660, 949, 1416, 1455 |
| NlaIII | CATG | 6 cut(s) | 430, 852, 968, 1202, 1576, 1829 |
| NlaIV | GGNNCC | 6 cut(s) | 273, 312, 494, 627, 1332, 1669 |
| NmuCI | GTSAC | 4 cut(s) | 244, 362, 475, 1024 |
| NsbI | TGCGCA | 1 cut(s) | 1610 |
| NspI | RCATGY | 1 cut(s) | 1202 |
| OliI | CACNNNNGTG | 1 cut(s) | 551 |
| PagI | TCATGA | 1 cut(s) | 964 |
| PciI | ACATGT | 1 cut(s) | 1198 |
| PciSI | GCTCTTC | 1 cut(s) | 456 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 177 |
| PctI | GAATGC | 1 cut(s) | 188 |
| PdmI | GAANNNNTTC | 1 cut(s) | 935 |
| PfeI | GAWTC | 5 cut(s) | 692, 905, 961, 1246, 1745 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 486 |
| PinAI | ACCGGT | 1 cut(s) | 1028 |
| PkrI | GCNGC | 8 cut(s) | 187, 742, 1072, 1194, 1502, 1525, 1528, 1765 |
| Ple19I | CGATCG | 1 cut(s) | 663 |
| PleI | GAGTC | 1 cut(s) | 241 |
| PmaCI | CACGTG | 1 cut(s) | 486 |
| PmlI | CACGTG | 1 cut(s) | 486 |
| PpsI | GAGTC | 1 cut(s) | 241 |
| Ppu21I | YACGTR | 1 cut(s) | 486 |
| PscI | ACATGT | 1 cut(s) | 1198 |
| PsiI | TTATAA | 2 cut(s) | 810, 1146 |
| Psp6I | CCWGG | 1 cut(s) | 1386 |
| PspCI | CACGTG | 1 cut(s) | 486 |
| PspEI | GGTNACC | 1 cut(s) | 475 |
| PspFI | CCCAGC | 1 cut(s) | 588 |
| PspGI | CCWGG | 1 cut(s) | 1386 |
| PspN4I | GGNNCC | 6 cut(s) | 273, 312, 494, 627, 1332, 1669 |
| PspPI | GGNCC | 4 cut(s) | 271, 311, 1330, 1836 |
| PsuI | RGATCY | 2 cut(s) | 318, 1416 |
| PvuI | CGATCG | 1 cut(s) | 663 |
| RsaI | GTAC | 3 cut(s) | 767, 1346, 1514 |
| RsaNI | GTAC | 3 cut(s) | 766, 1345, 1513 |
| RseI | CAYNNNNRTG | 3 cut(s) | 551, 1112, 1577 |
| SapI | GCTCTTC | 1 cut(s) | 456 |
| SaqAI | TTAA | 5 cut(s) | 777, 842, 915, 1349, 1445 |
| SatI | GCNGC | 8 cut(s) | 186, 741, 1071, 1193, 1501, 1524, 1527, 1764 |
| Sau3AI | GATC | 5 cut(s) | 318, 660, 949, 1416, 1455 |
| Sau96I | GGNCC | 4 cut(s) | 271, 311, 1330, 1836 |
| SchI | GAGTC | 1 cut(s) | 241 |
| ScrFI | CCNGG | 3 cut(s) | 315, 473, 1388 |
| SduI | GDGCHC | 3 cut(s) | 72, 243, 468 |
| SfaNI | GCATC | 6 cut(s) | 163, 336, 507, 771, 808, 1759 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1028 |
| SinI | GGWCC | 3 cut(s) | 271, 311, 1330 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 551, 1112, 1577 |
| SpeI | ACTAGT | 2 cut(s) | 575, 986 |
| SsiI | CCGC | 6 cut(s) | 186, 269, 308, 490, 621, 1763 |
| SspI | AATATT | 1 cut(s) | 39 |
| SspMI | CTAG | 4 cut(s) | 161, 576, 987, 1089 |
| StyD4I | CCNGG | 3 cut(s) | 313, 471, 1386 |
| StyI | CCWWGG | 1 cut(s) | 549 |
| TaaI | ACNGT | 1 cut(s) | 338 |
| TaiI | ACGT | 5 cut(s) | 79, 155, 488, 567, 1026 |
| TatI | WGTACW | 2 cut(s) | 1344, 1512 |
| TauI | GCSGC | 2 cut(s) | 188, 1766 |
| TfiI | GAWTC | 5 cut(s) | 692, 905, 961, 1246, 1745 |
| Tru1I | TTAA | 5 cut(s) | 777, 842, 915, 1349, 1445 |
| Tru9I | TTAA | 5 cut(s) | 777, 842, 915, 1349, 1445 |
| TscAI | CASTG | 4 cut(s) | 421, 702, 1086, 1457 |
| TseFI | GTSAC | 4 cut(s) | 244, 362, 475, 1024 |
| TseI | GCWGC | 6 cut(s) | 740, 1070, 1192, 1500, 1523, 1526 |
| Tsp45I | GTSAC | 4 cut(s) | 244, 362, 475, 1024 |
| TspGWI | ACGGA | 3 cut(s) | 169, 293, 783 |
| TspRI | CASTG | 4 cut(s) | 421, 702, 1086, 1457 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 486 |
| VneI | GTGCAC | 1 cut(s) | 68 |
| VpaK11BI | GGWCC | 3 cut(s) | 271, 311, 1330 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1385 |
| XapI | RAATTY | 6 cut(s) | 410, 899, 910, 935, 1237, 1807 |
| XbaI | TCTAGA | 1 cut(s) | 160 |
| XceI | RCATGY | 1 cut(s) | 1202 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1449 |
| XmnI | GAANNNNTTC | 1 cut(s) | 935 |
| XspI | CTAG | 4 cut(s) | 161, 576, 987, 1089 |
| ZraI | GACGTC | 2 cut(s) | 77, 1024 |