Cyclic nucleotide-gated ion channel 1-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Arf | PF00025 | 14 - 175 | 5.4e-66 | ADP-ribosylation factor family |
| SRPRB | PF09439 | 18 - 143 | 5.9e-11 | Signal recognition particle receptor beta subunit |
| Roc | PF08477 | 19 - 129 | 6.2e-14 | Ras of Complex, Roc, domain of DAPkinase |
| Ras | PF00071 | 19 - 133 | 1e-11 | Ras family |
| MMR_HSR1 | PF01926 | 19 - 123 | 7.4e-06 | 50S ribosome-binding GTPase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 171 |
| AclWI | GGATC | 3 cut(s) | 207, 351, 524 |
| AcsI | RAATTY | 1 cut(s) | 297 |
| AcuI | CTGAAG | 1 cut(s) | 307 |
| AfaI | GTAC | 1 cut(s) | 363 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 146, 486, 487 |
| AgsI | TTSAA | 1 cut(s) | 350 |
| AluBI | AGCT | 2 cut(s) | 166, 410 |
| AluI | AGCT | 2 cut(s) | 166, 410 |
| AlwI | GGATC | 3 cut(s) | 207, 351, 524 |
| AoxI | GGCC | 2 cut(s) | 291, 505 |
| ApeKI | GCWGC | 1 cut(s) | 150 |
| ApoI | RAATTY | 1 cut(s) | 297 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 153, 185 |
| AspA2I | CCTAGG | 1 cut(s) | 508 |
| AspS9I | GGNCC | 1 cut(s) | 291 |
| AvrII | CCTAGG | 1 cut(s) | 508 |
| BaeGI | GKGCMC | 1 cut(s) | 481 |
| BbsI | GAAGAC | 1 cut(s) | 95 |
| BbvI | GCAGC | 1 cut(s) | 162 |
| BccI | CCATC | 2 cut(s) | 485, 497 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 139, 173 |
| BfaI | CTAG | 2 cut(s) | 509, 546 |
| BfmI | CTRYAG | 1 cut(s) | 144 |
| BglII | AGATCT | 1 cut(s) | 385 |
| BisI | GCNGC | 1 cut(s) | 151 |
| BlnI | CCTAGG | 1 cut(s) | 508 |
| BlsI | GCNGC | 1 cut(s) | 152 |
| BmgT120I | GGNCC | 1 cut(s) | 291 |
| BmrI | ACTGGG | 1 cut(s) | 543 |
| BmsI | GCATC | 1 cut(s) | 385 |
| BmuI | ACTGGG | 1 cut(s) | 543 |
| BpiI | GAAGAC | 1 cut(s) | 95 |
| BpuEI | CTTGAG | 1 cut(s) | 374 |
| BsaJI | CCNNGG | 2 cut(s) | 247, 508 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 111, 141 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 146, 486, 487 |
| Bse1I | ACTGG | 3 cut(s) | 369, 461, 538 |
| Bse3DI | GCAATG | 1 cut(s) | 160 |
| BseDI | CCNNGG | 2 cut(s) | 247, 508 |
| BseGI | GGATG | 4 cut(s) | 319, 400, 462, 496 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 146, 486, 487 |
| BseMI | GCAATG | 1 cut(s) | 160 |
| BseMII | CTCAG | 2 cut(s) | 212, 402 |
| BseNI | ACTGG | 3 cut(s) | 369, 461, 538 |
| BseSI | GKGCMC | 1 cut(s) | 481 |
| BseXI | GCAGC | 1 cut(s) | 162 |
| BseYI | CCCAGC | 2 cut(s) | 83, 406 |
| BshFI | GGCC | 2 cut(s) | 293, 507 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 146, 486, 487 |
| BsnI | GGCC | 2 cut(s) | 293, 507 |
| Bsp1286I | GDGCHC | 1 cut(s) | 481 |
| Bsp143I | GATC | 5 cut(s) | 199, 343, 385, 414, 516 |
| BspANI | GGCC | 2 cut(s) | 293, 507 |
| BspCNI | CTCAG | 2 cut(s) | 213, 403 |
| BspHI | TCATGA | 1 cut(s) | 451 |
| BspPI | GGATC | 3 cut(s) | 207, 351, 524 |
| BspQI | GCTCTTC | 1 cut(s) | 156 |
| BsrDI | GCAATG | 1 cut(s) | 160 |
| BsrI | ACTGG | 3 cut(s) | 369, 461, 538 |
| BssECI | CCNNGG | 2 cut(s) | 247, 508 |
| BssMI | GATC | 5 cut(s) | 199, 343, 385, 414, 516 |
| BssT1I | CCWWGG | 1 cut(s) | 508 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 248 |
| Bst6I | CTCTTC | 3 cut(s) | 156, 326, 438 |
| BstC8I | GCNNGC | 1 cut(s) | 472 |
| BstDEI | CTNAG | 2 cut(s) | 221, 411 |
| BstDSI | CCRYGG | 1 cut(s) | 247 |
| BstF5I | GGATG | 4 cut(s) | 319, 400, 462, 496 |
| BstKTI | GATC | 5 cut(s) | 202, 346, 388, 417, 519 |
| BstMBI | GATC | 5 cut(s) | 199, 343, 385, 414, 516 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 476 |
| BstSFI | CTRYAG | 1 cut(s) | 144 |
| BstSLI | GKGCMC | 1 cut(s) | 481 |
| BstV1I | GCAGC | 1 cut(s) | 162 |
| BstV2I | GAAGAC | 1 cut(s) | 95 |
| BstX2I | RGATCY | 3 cut(s) | 199, 343, 385 |
| BstYI | RGATCY | 3 cut(s) | 199, 343, 385 |
| BsuRI | GGCC | 2 cut(s) | 293, 507 |
| BtgI | CCRYGG | 1 cut(s) | 247 |
| BtsCI | GGATG | 4 cut(s) | 319, 400, 462, 496 |
| BtsIMutI | CAGTG | 1 cut(s) | 417 |
| Cac8I | GCNNGC | 1 cut(s) | 472 |
| CciI | TCATGA | 1 cut(s) | 451 |
| Cfr13I | GGNCC | 1 cut(s) | 291 |
| Csp6I | GTAC | 1 cut(s) | 362 |
| CviAII | CATG | 5 cut(s) | 31, 231, 338, 400, 452 |
| CviJI | RGCY | 4 cut(s) | 166, 293, 410, 507 |
| CviKI_1 | RGCY | 4 cut(s) | 166, 293, 410, 507 |
| CviQI | GTAC | 1 cut(s) | 362 |
| DdeI | CTNAG | 2 cut(s) | 221, 411 |
| DpnI | GATC | 5 cut(s) | 201, 345, 387, 416, 518 |
| DpnII | GATC | 5 cut(s) | 199, 343, 385, 414, 516 |
| Eam1104I | CTCTTC | 3 cut(s) | 156, 326, 438 |
| EarI | CTCTTC | 3 cut(s) | 156, 326, 438 |
| Eco130I | CCWWGG | 1 cut(s) | 508 |
| Eco57I | CTGAAG | 1 cut(s) | 307 |
| EcoT14I | CCWWGG | 1 cut(s) | 508 |
| ErhI | CCWWGG | 1 cut(s) | 508 |
| FaeI | CATG | 5 cut(s) | 34, 234, 341, 403, 455 |
| FatI | CATG | 5 cut(s) | 30, 230, 337, 399, 451 |
| FblI | GTMKAC | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 1 cut(s) | 151 |
| FokI | GGATG | 4 cut(s) | 326, 407, 449, 503 |
| Fsp4HI | GCNGC | 1 cut(s) | 151 |
| FspBI | CTAG | 2 cut(s) | 509, 546 |
| GluI | GCNGC | 1 cut(s) | 151 |
| GsaI | CCCAGC | 2 cut(s) | 87, 410 |
| HaeIII | GGCC | 2 cut(s) | 293, 507 |
| Hin1II | CATG | 5 cut(s) | 34, 234, 341, 403, 455 |
| HinfI | GANTC | 1 cut(s) | 448 |
| Hpy166II | GTNNAC | 2 cut(s) | 172, 209 |
| Hpy188III | TCNNGA | 1 cut(s) | 452 |
| Hpy8I | GTNNAC | 2 cut(s) | 172, 209 |
| HpyAV | CCTTC | 1 cut(s) | 304 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 248 |
| HpyCH4V | TGCA | 2 cut(s) | 44, 112 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 476 |
| HpyF3I | CTNAG | 2 cut(s) | 221, 411 |
| Hsp92II | CATG | 5 cut(s) | 34, 234, 341, 403, 455 |
| Kzo9I | GATC | 5 cut(s) | 199, 343, 385, 414, 516 |
| LguI | GCTCTTC | 1 cut(s) | 156 |
| Lsp1109I | GCAGC | 1 cut(s) | 162 |
| LweI | GCATC | 1 cut(s) | 385 |
| MaeI | CTAG | 2 cut(s) | 509, 546 |
| MaeIII | GTNAC | 2 cut(s) | 127, 529 |
| MalI | GATC | 5 cut(s) | 201, 345, 387, 416, 518 |
| MboI | GATC | 5 cut(s) | 199, 343, 385, 414, 516 |
| MboII | GAAGA | 5 cut(s) | 100, 173, 313, 338, 425 |
| MflI | RGATCY | 3 cut(s) | 199, 343, 385 |
| MhlI | GDGCHC | 1 cut(s) | 481 |
| MluCI | AATT | 2 cut(s) | 107, 297 |
| MmeI | TCCRAC | 2 cut(s) | 54, 494 |
| MnlI | CCTC | 7 cut(s) | 12, 115, 184, 216, 334, 491, 532 |
| MseI | TTAA | 1 cut(s) | 444 |
| MspA1I | CMGCKG | 1 cut(s) | 410 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 476 |
| NdeII | GATC | 5 cut(s) | 199, 343, 385, 414, 516 |
| NlaIII | CATG | 5 cut(s) | 34, 234, 341, 403, 455 |
| NmuCI | GTSAC | 1 cut(s) | 127 |
| PagI | TCATGA | 1 cut(s) | 451 |
| PciSI | GCTCTTC | 1 cut(s) | 156 |
| PfeI | GAWTC | 1 cut(s) | 448 |
| PkrI | GCNGC | 1 cut(s) | 152 |
| PspFI | CCCAGC | 2 cut(s) | 83, 406 |
| PspPI | GGNCC | 1 cut(s) | 291 |
| PsuI | RGATCY | 3 cut(s) | 199, 343, 385 |
| PvuII | CAGCTG | 1 cut(s) | 410 |
| RsaI | GTAC | 1 cut(s) | 363 |
| RsaNI | GTAC | 1 cut(s) | 362 |
| SapI | GCTCTTC | 1 cut(s) | 156 |
| SaqAI | TTAA | 1 cut(s) | 444 |
| SatI | GCNGC | 1 cut(s) | 151 |
| Sau3AI | GATC | 5 cut(s) | 199, 343, 385, 414, 516 |
| Sau96I | GGNCC | 1 cut(s) | 291 |
| SduI | GDGCHC | 1 cut(s) | 481 |
| SetI | ASST | 8 cut(s) | 23, 126, 168, 195, 329, 412, 514, 547 |
| SfaNI | GCATC | 1 cut(s) | 385 |
| SfcI | CTRYAG | 1 cut(s) | 144 |
| SmlI | CTYRAG | 1 cut(s) | 389 |
| SmoI | CTYRAG | 1 cut(s) | 389 |
| Sse9I | AATT | 2 cut(s) | 107, 297 |
| SspMI | CTAG | 2 cut(s) | 509, 546 |
| StyI | CCWWGG | 1 cut(s) | 508 |
| TaaI | ACNGT | 2 cut(s) | 145, 248 |
| TaqI | TCGA | 2 cut(s) | 17, 159 |
| TasI | AATT | 2 cut(s) | 107, 297 |
| TatI | WGTACW | 1 cut(s) | 361 |
| TfiI | GAWTC | 1 cut(s) | 448 |
| Tru1I | TTAA | 1 cut(s) | 444 |
| Tru9I | TTAA | 1 cut(s) | 444 |
| TscAI | CASTG | 1 cut(s) | 424 |
| TseFI | GTSAC | 1 cut(s) | 127 |
| TseI | GCWGC | 1 cut(s) | 150 |
| Tsp45I | GTSAC | 1 cut(s) | 127 |
| TspDTI | ATGAA | 4 cut(s) | 19, 219, 323, 330 |
| TspRI | CASTG | 1 cut(s) | 424 |
| XapI | RAATTY | 1 cut(s) | 297 |
| XmaJI | CCTAGG | 1 cut(s) | 508 |
| XmiI | GTMKAC | 1 cut(s) | 171 |
| XspI | CTAG | 2 cut(s) | 509, 546 |