RchiOBHm_Chr1g0318251

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000017
Physical Location & Seq
Reverse (-)
5694317 .. 5699212
4896 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54854

Sequence Viewer

Length: 1845 bp
ATGTATATTGTGCTCTGGTTCAGTAATACACAATGGAATGGTGTAGAGGTGAAAGAATCTTCAAGTACAAGAATAAAAAAGTGGCCAGAAGTAAAGGACATTCTGAATCCACATGATGACGACGAGCCAAAGATTTTCTTTCCGATGTGGGATGTAATCTTTATGATATCGTGTGCAATTGCTGTCTTCCTTGATCCTTTGTACAGTTACATTCCGGTCGTCGACGAGGACAGGACCTGCTACTTTTGGGATCAAAAGTTGATGTGGACATTTCTGGGCTTAAGATCTGCTGTAGATCTTTTTTATATGATGGACATTATCATTTTCTTACATCGAATTCATAGCATAAATATTACTTATGCTAAGTTTGCTGCCTCCTGGTCCTGGAAAGTAAAGGATGGTAGAGTCTTAAATTTGAAGAAAAAGAAATCACTTAAGGAACGTATTCGCAAGCGTTTTCCCGTTCTACCTCGCATTTTCGTTGCTCTTCCAATCCTACAGGCTGTGGCACTCACCGGAAAATATACACAATATAATAATTTTGACTTGTTTCTGGTCACTCCGGTTCAATATATCATGCGTGTTTACTACATCTATGGATCGCTCAAGGGAATTCCGAACATAGCAACTGAAGTAGGAAGATTTCTTCAAGCTATTTTGGATTTTCTTCCCTTCGTACTTGCTGCTCATCTATTTGGCGCATTGTGGTATGGTCTTGCTCTTCAACGAGAAGTAGATTGTTGGACGAGCGACGTTGTGTGTATGAATGTTACAGATCAACAACCGATATGTGATAGTTACACACTAAATTACTTCTACTGTAGTAATTACACCGAGGGCAACAATAAAATCATCAATATCACGCATTTAGAGGAAACATGCAATATAGATGCAAGTCCACCAATCTTCGACTTTGGCATTTATCTTTACGCTCTTCAGTCTAATATGACAAGTTCATCAACATCTCTTCCACGAAAGATGTTGCAATGTTTTTGGTGGGGTTTAAGAAATATTAGTTCTTTTGGTTCCAATCTTCAAACCGGTCCCCATATAGTGGAGATTATCTTTGCGGTGTTGGCTTTAAAAAACATATCAGATCAGCTTAAAATGAAGAGGAAGGTAAAAATGATGAGTCTAGAGGTAGATTTGTGGTTATCAAGAAATAACCTCCCTCGAAAAGATCTGAAGCGGTTAAAGAAAATGATCATGAAAAATGTAAAAGAAAAACTTGAAGAAAAAAAAGATATCGATATGCACAATGTCCTCAGCATTCTCCCCATAGTACAGAAAAGGCGTATCATGTGCATTCTTCGCTTGGCTTCGCTGAAGGAAGTTGTCATGTTTAGAACTATGAATGAACAAGTACTGGAAGCAATTTGCGAGTATCTCAAGCCAGTGACATATACCGAGGGCTGCAACATTATTCAAGAGGGACAACCACTTGAGATGATGCTTTTCATCACGCAAGGCACTGCATTGACTTACGTCACTAGTAGTACCAATGGCGCAACAAGAAGTTCCTCCGTCATCAAGTACCTCAAGAGAGGTGATCTTTGTGGAGAAGAACTCTTAAATTGCATATCAAAACTTGCTGCCTTTTCAGACTTTCCCATCTCAACCAGAGTTGTGAAGGCCCAAACAAGAATTGAAGGATTTGCTTTAAGGGCGCATGACTTGAAGAGTGTTGTCTCCAACTTTTGGTGGCATTTTAGAAGGGAGGAGCTTGATCGAGTAGATGGCTCTCAATTGCCGGAGTGGGAACATGTGGCAGCTTCTTTCATACAAGAAAAATGGCGCCTCCGCCATCATGCAAGGTCTAGCAAATCCTGTGAGAGTATGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase_Tyr cNMP_binding

Protein Analysis

614

Amino Acids

71.5

Weight (kDa)

9.0

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 1794
AccB7I CCANNNNNTGG 2 cut(s) 1054, 1698
AccI GTMKAC 1 cut(s) 222
AciI CCGC 3 cut(s) 1070, 1189, 1801
AclWI GGATC 3 cut(s) 188, 258, 607
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 3 cut(s) 336, 412, 612
AcuI CTGAAG 4 cut(s) 651, 920, 1205, 1346
AcyI GRCGYC 1 cut(s) 1795
AfaI GTAC 7 cut(s) 67, 203, 678, 1284, 1365, 1498, 1535
AfiI CCNNNNNNNGG 3 cut(s) 384, 1054, 1698
AflII CTTAAG 2 cut(s) 280, 434
AflIII ACRYGT 1 cut(s) 1762
AgeI ACCGGT 1 cut(s) 1040
AhlI ACTAGT 1 cut(s) 1490
AjnI CCWGG 2 cut(s) 377, 383
AluBI AGCT 4 cut(s) 653, 1102, 1723, 1772
AluI AGCT 4 cut(s) 653, 1102, 1723, 1772
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 1693
AlwI GGATC 3 cut(s) 188, 258, 607
AlwNI CAGNNNCTG 1 cut(s) 237
AoxI GGCC 2 cut(s) 83, 1632
ApeKI GCWGC 5 cut(s) 371, 683, 1413, 1592, 1769
ApoI RAATTY 3 cut(s) 336, 412, 612
AsiGI ACCGGT 1 cut(s) 1040
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 4 cut(s) 701, 1508, 1669, 1797
AspS9I GGNCC 4 cut(s) 234, 381, 1043, 1633
AsuHPI GGTGA 3 cut(s) 61, 505, 1559
AvaII GGWCC 3 cut(s) 234, 381, 1043
BalI TGGCCA 1 cut(s) 85
BanI GGYRCC 1 cut(s) 1794
BbsI GAAGAC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 15
BbvCI CCTCAGC 1 cut(s) 1265
BbvI GCAGC 5 cut(s) 358, 670, 1400, 1579, 1781
BccI CCATC 5 cut(s) 304, 392, 1619, 1730, 1812
BciT130I CCWGG 2 cut(s) 379, 385
BclI TGATCA 1 cut(s) 1203
BcoDI GTCTC 1 cut(s) 1693
BcuI ACTAGT 1 cut(s) 1490
BfaI CTAG 3 cut(s) 1136, 1491, 1818
BfmI CTRYAG 3 cut(s) 291, 497, 820
BfoI RGCGCY 1 cut(s) 1798
BfrI CTTAAG 2 cut(s) 280, 434
BfuAI ACCTGC 1 cut(s) 245
BglII AGATCT 3 cut(s) 284, 295, 1180
BisI GCNGC 5 cut(s) 372, 684, 1414, 1593, 1770
BlsI GCNGC 5 cut(s) 373, 685, 1415, 1594, 1771
BmcAI AGTACT 1 cut(s) 1365
Bme1390I CCNGG 2 cut(s) 379, 385
Bme18I GGWCC 3 cut(s) 234, 381, 1043
BmgT120I GGNCC 4 cut(s) 234, 381, 1043, 1633
BmiI GGNNCC 3 cut(s) 1027, 1045, 1796
BmrFI CCNGG 2 cut(s) 379, 385
BmsI GCATC 2 cut(s) 880, 1440
BoxI GACNNNNGTC 1 cut(s) 1484
BpiI GAAGAC 1 cut(s) 178
BplI GAGNNNNNCTC 2 cut(s) 1551, 1583
Bpu10I CCTNAGC 1 cut(s) 1265
BpuEI CTTGAG 4 cut(s) 590, 1373, 1463, 1523
Bsa29I ATCGAT 1 cut(s) 1248
BsaHI GRCGYC 1 cut(s) 1795
BsaJI CCNNGG 2 cut(s) 834, 1407
BsaWI WCCGGW 4 cut(s) 214, 515, 562, 1040
Bsc4I CCNNNNNNNGG 3 cut(s) 384, 1054, 1698
Bse118I RCCGGY 1 cut(s) 1040
Bse1I ACTGG 2 cut(s) 1371, 1394
Bse3DI GCAATG 1 cut(s) 992
BseBI CCWGG 2 cut(s) 379, 385
BseCI ATCGAT 1 cut(s) 1248
BseDI CCNNGG 2 cut(s) 834, 1407
BseGI GGATG 2 cut(s) 157, 403
BseLI CCNNNNNNNGG 3 cut(s) 384, 1054, 1698
BseMI GCAATG 1 cut(s) 992
BseMII CTCAG 1 cut(s) 1279
BseNI ACTGG 2 cut(s) 1371, 1394
BseRI GAGGAG 1 cut(s) 1733
BseXI GCAGC 5 cut(s) 358, 670, 1400, 1579, 1781
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 2 cut(s) 85, 1634
BshNI GGYRCC 1 cut(s) 1794
BshTI ACCGGT 1 cut(s) 1040
BshVI ATCGAT 1 cut(s) 1248
BsiEI CGRYCG 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 5 cut(s) 215, 516, 563, 1041, 1751
BslFI GGGAC 2 cut(s) 1029, 1446
BslI CCNNNNNNNGG 3 cut(s) 384, 1054, 1698
BsmAI GTCTC 1 cut(s) 1693
BsmFI GGGAC 2 cut(s) 1029, 1446
BsmI GAATGC 2 cut(s) 1269, 1305
BsnI GGCC 2 cut(s) 85, 1634
Bsp1286I GDGCHC 1 cut(s) 15
Bsp1407I TGTACA 1 cut(s) 201
BspACI CCGC 3 cut(s) 1070, 1189, 1801
BspANI GGCC 2 cut(s) 85, 1634
BspCNI CTCAG 1 cut(s) 1278
BspDI ATCGAT 1 cut(s) 1248
BspHI TCATGA 1 cut(s) 1206
BspLI GGNNCC 3 cut(s) 1027, 1045, 1796
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 3 cut(s) 188, 258, 607
BspQI GCTCTTC 3 cut(s) 492, 726, 939
BspT107I GGYRCC 1 cut(s) 1794
BspTI CTTAAG 2 cut(s) 280, 434
BsrDI GCAATG 1 cut(s) 992
BsrFI RCCGGY 1 cut(s) 1040
BsrGI TGTACA 1 cut(s) 201
BsrI ACTGG 2 cut(s) 1371, 1394
BssAI RCCGGY 1 cut(s) 1040
BssECI CCNNGG 2 cut(s) 834, 1407
BssNI GRCGYC 1 cut(s) 1795
Bst2UI CCWGG 2 cut(s) 379, 385
Bst4CI ACNGT 2 cut(s) 206, 821
Bst6I CTCTTC 6 cut(s) 492, 726, 939, 972, 1106, 1673
BstACI GRCGYC 1 cut(s) 1795
BstAFI CTTAAG 2 cut(s) 280, 434
BstAUI TGTACA 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 452
BstDEI CTNAG 2 cut(s) 363, 1265
BstF5I GGATG 2 cut(s) 157, 403
BstH2I RGCGCY 1 cut(s) 1798
BstHHI GCGC 4 cut(s) 701, 1508, 1669, 1797
BstMAI GTCTC 1 cut(s) 1693
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 4 cut(s) 368, 1076, 1311, 1664
BstNI CCWGG 2 cut(s) 379, 385
BstNSI RCATGY 2 cut(s) 882, 1766
BstPAI GACNNNNGTC 1 cut(s) 1484
BstSCI CCNGG 2 cut(s) 377, 383
BstSFI CTRYAG 3 cut(s) 291, 497, 820
BstV1I GCAGC 5 cut(s) 358, 670, 1400, 1579, 1781
BstV2I GAAGAC 1 cut(s) 178
BstX2I RGATCY 3 cut(s) 284, 295, 1180
BstYI RGATCY 3 cut(s) 284, 295, 1180
Bsu15I ATCGAT 1 cut(s) 1248
BsuRI GGCC 2 cut(s) 85, 1634
BsuTUI ATCGAT 1 cut(s) 1248
BtsCI GGATG 2 cut(s) 157, 403
BtsI GCAGTG 1 cut(s) 1470
BtsIMutI CAGTG 3 cut(s) 1401, 1470, 1840
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 452
CaiI CAGNNNCTG 1 cut(s) 237
CciI TCATGA 1 cut(s) 1206
CfoI GCGC 4 cut(s) 701, 1508, 1669, 1797
Cfr10I RCCGGY 1 cut(s) 1040
Cfr13I GGNCC 4 cut(s) 234, 381, 1043, 1633
ClaI ATCGAT 1 cut(s) 1248
Csp6I GTAC 7 cut(s) 66, 202, 677, 1283, 1364, 1497, 1534
CspAI ACCGGT 1 cut(s) 1040
CviAII CATG 9 cut(s) 113, 577, 879, 1207, 1300, 1339, 1670, 1763, 1808
CviQI GTAC 7 cut(s) 66, 202, 677, 1283, 1364, 1497, 1534
DdeI CTNAG 2 cut(s) 363, 1265
DinI GGCGCC 1 cut(s) 1796
DraI TTTAAA 1 cut(s) 1083
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 6 cut(s) 492, 726, 939, 972, 1106, 1673
EarI CTCTTC 6 cut(s) 492, 726, 939, 972, 1106, 1673
EciI GGCGGA 1 cut(s) 1790
Eco32I GATATC 2 cut(s) 168, 1246
Eco47I GGWCC 3 cut(s) 234, 381, 1043
Eco57I CTGAAG 4 cut(s) 651, 920, 1205, 1346
EcoO109I RGGNCCY 1 cut(s) 234
EcoRI GAATTC 2 cut(s) 336, 612
EcoRII CCWGG 2 cut(s) 377, 383
EcoRV GATATC 2 cut(s) 168, 1246
EgeI GGCGCC 1 cut(s) 1796
EheI GGCGCC 1 cut(s) 1796
FaeI CATG 9 cut(s) 116, 580, 882, 1210, 1303, 1342, 1673, 1766, 1811
FalI AAGNNNNNCTT 4 cut(s) 122, 154, 1212, 1244
FaqI GGGAC 2 cut(s) 1029, 1446
FatI CATG 9 cut(s) 112, 576, 878, 1206, 1299, 1338, 1669, 1762, 1807
FbaI TGATCA 1 cut(s) 1203
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 5 cut(s) 372, 684, 1414, 1593, 1770
FokI GGATG 2 cut(s) 164, 410
Fsp4HI GCNGC 5 cut(s) 372, 684, 1414, 1593, 1770
FspBI CTAG 3 cut(s) 1136, 1491, 1818
GlaI GCGC 4 cut(s) 700, 1507, 1668, 1796
GluI GCNGC 5 cut(s) 372, 684, 1414, 1593, 1770
HaeII RGCGCY 1 cut(s) 1798
HaeIII GGCC 2 cut(s) 85, 1634
HapII CCGG 5 cut(s) 215, 516, 563, 1041, 1751
HhaI GCGC 4 cut(s) 701, 1508, 1669, 1797
Hin1I GRCGYC 1 cut(s) 1795
Hin1II CATG 9 cut(s) 116, 580, 882, 1210, 1303, 1342, 1673, 1766, 1811
Hin6I GCGC 4 cut(s) 699, 1506, 1667, 1795
HinP1I GCGC 4 cut(s) 699, 1506, 1667, 1795
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 4 cut(s) 56, 106, 405, 1132
HpaII CCGG 5 cut(s) 215, 516, 563, 1041, 1751
HphI GGTGA 3 cut(s) 61, 505, 1559
Hpy166II GTNNAC 4 cut(s) 223, 267, 586, 899
Hpy188I TCNGA 6 cut(s) 105, 144, 618, 1096, 1185, 1603
Hpy188III TCNNGA 5 cut(s) 1136, 1158, 1207, 1427, 1540
Hpy8I GTNNAC 4 cut(s) 223, 267, 586, 899
Hpy99I CGWCG 4 cut(s) 125, 224, 227, 755
HpyAV CCTTC 6 cut(s) 682, 1111, 1321, 1624, 1643, 1707
HpyCH4III ACNGT 2 cut(s) 206, 821
HpyCH4IV ACGT 3 cut(s) 442, 753, 1485
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 1076, 1311, 1664
HpyF3I CTNAG 2 cut(s) 363, 1265
HpySE526I ACGT 3 cut(s) 442, 753, 1485
Hsp92I GRCGYC 1 cut(s) 1795
Hsp92II CATG 9 cut(s) 116, 580, 882, 1210, 1303, 1342, 1673, 1766, 1811
HspAI GCGC 4 cut(s) 699, 1506, 1667, 1795
KasI GGCGCC 1 cut(s) 1794
Ksp22I TGATCA 1 cut(s) 1203
LguI GCTCTTC 3 cut(s) 492, 726, 939
LmnI GCTCC 1 cut(s) 1720
Lsp1109I GCAGC 5 cut(s) 358, 670, 1400, 1579, 1781
LweI GCATC 2 cut(s) 880, 1440
MaeI CTAG 3 cut(s) 1136, 1491, 1818
MaeII ACGT 3 cut(s) 442, 753, 1485
MaeIII GTNAC 6 cut(s) 206, 556, 769, 797, 1396, 1486
MfeI CAATTG 2 cut(s) 177, 1745
MflI RGATCY 3 cut(s) 284, 295, 1180
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 85
MluNI TGGCCA 1 cut(s) 85
Mly113I GGCGCC 1 cut(s) 1795
MlyI GAGTC 2 cut(s) 414, 1141
MmeI TCCRAC 2 cut(s) 722, 1716
Mox20I TGGCCA 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 444
MscI TGGCCA 1 cut(s) 85
MseI TTAA 9 cut(s) 281, 410, 435, 1004, 1082, 1104, 1193, 1571, 1661
Msp20I TGGCCA 1 cut(s) 85
MspCI CTTAAG 2 cut(s) 280, 434
MspI CCGG 5 cut(s) 215, 516, 563, 1041, 1751
MspR9I CCNGG 2 cut(s) 379, 385
MunI CAATTG 2 cut(s) 177, 1745
Mva1269I GAATGC 2 cut(s) 1269, 1305
MvaI CCWGG 2 cut(s) 379, 385
MwoI GCNNNNNNNGC 4 cut(s) 368, 1076, 1311, 1664
NarI GGCGCC 1 cut(s) 1795
NlaIII CATG 9 cut(s) 116, 580, 882, 1210, 1303, 1342, 1673, 1766, 1811
NlaIV GGNNCC 3 cut(s) 1027, 1045, 1796
NmuCI GTSAC 3 cut(s) 556, 1396, 1486
NspI RCATGY 2 cut(s) 882, 1766
PagI TCATGA 1 cut(s) 1206
PciI ACATGT 1 cut(s) 1762
PciSI GCTCTTC 3 cut(s) 492, 726, 939
PctI GAATGC 2 cut(s) 1269, 1305
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 56, 106
PflMI CCANNNNNTGG 2 cut(s) 1054, 1698
PfoI TCCNGGA 1 cut(s) 383
PinAI ACCGGT 1 cut(s) 1040
PkrI GCNGC 5 cut(s) 373, 685, 1415, 1594, 1771
PleI GAGTC 2 cut(s) 413, 1140
PluTI GGCGCC 1 cut(s) 1798
PpsI GAGTC 2 cut(s) 413, 1140
PpuMI RGGWCCY 1 cut(s) 234
PscI ACATGT 1 cut(s) 1762
PshAI GACNNNNGTC 1 cut(s) 1484
Psp5II RGGWCCY 1 cut(s) 234
Psp6I CCWGG 2 cut(s) 377, 383
PspGI CCWGG 2 cut(s) 377, 383
PspN4I GGNNCC 3 cut(s) 1027, 1045, 1796
PspPI GGNCC 4 cut(s) 234, 381, 1043, 1633
PspPPI RGGWCCY 1 cut(s) 234
PstNI CAGNNNCTG 1 cut(s) 237
PsuI RGATCY 3 cut(s) 284, 295, 1180
RsaI GTAC 7 cut(s) 67, 203, 678, 1284, 1365, 1498, 1535
RsaNI GTAC 7 cut(s) 66, 202, 677, 1283, 1364, 1497, 1534
SalI GTCGAC 1 cut(s) 221
SapI GCTCTTC 3 cut(s) 492, 726, 939
SaqAI TTAA 9 cut(s) 281, 410, 435, 1004, 1082, 1104, 1193, 1571, 1661
SatI GCNGC 5 cut(s) 372, 684, 1414, 1593, 1770
Sau96I GGNCC 4 cut(s) 234, 381, 1043, 1633
ScaI AGTACT 1 cut(s) 1365
SchI GAGTC 2 cut(s) 414, 1141
ScrFI CCNGG 2 cut(s) 379, 385
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 2 cut(s) 880, 1440
SfcI CTRYAG 3 cut(s) 291, 497, 820
SfoI GGCGCC 1 cut(s) 1796
SgrDI CGTCGACG 1 cut(s) 221
SinI GGWCC 3 cut(s) 234, 381, 1043
SmlI CTYRAG 6 cut(s) 280, 434, 605, 1388, 1442, 1538
SmoI CTYRAG 6 cut(s) 280, 434, 605, 1388, 1442, 1538
SpeI ACTAGT 1 cut(s) 1490
SsiI CCGC 3 cut(s) 1070, 1189, 1801
SspDI GGCGCC 1 cut(s) 1794
SspI AATATT 2 cut(s) 352, 1012
SspMI CTAG 3 cut(s) 1136, 1491, 1818
StyD4I CCNGG 2 cut(s) 377, 383
TaaI ACNGT 2 cut(s) 206, 821
TaiI ACGT 3 cut(s) 445, 756, 1488
TaqI TCGA 6 cut(s) 222, 334, 909, 1174, 1248, 1729
TatI WGTACW 4 cut(s) 65, 201, 1282, 1363
TfiI GAWTC 2 cut(s) 56, 106
Tru1I TTAA 9 cut(s) 281, 410, 435, 1004, 1082, 1104, 1193, 1571, 1661
Tru9I TTAA 9 cut(s) 281, 410, 435, 1004, 1082, 1104, 1193, 1571, 1661
TscAI CASTG 2 cut(s) 1401, 1477
TseFI GTSAC 3 cut(s) 556, 1396, 1486
TseI GCWGC 5 cut(s) 371, 683, 1413, 1592, 1769
Tsp45I GTSAC 3 cut(s) 556, 1396, 1486
TspDTI ATGAA 9 cut(s) 329, 779, 945, 1124, 1223, 1367, 1371, 1447, 1768
TspGWI ACGGA 1 cut(s) 1513
TspRI CASTG 2 cut(s) 1401, 1477
Van91I CCANNNNNTGG 2 cut(s) 1054, 1698
Vha464I CTTAAG 2 cut(s) 280, 434
VpaK11BI GGWCC 3 cut(s) 234, 381, 1043
XapI RAATTY 3 cut(s) 336, 412, 612
XbaI TCTAGA 1 cut(s) 1135
XceI RCATGY 2 cut(s) 882, 1766
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 3 cut(s) 1136, 1491, 1818
ZrmI AGTACT 1 cut(s) 1365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.