Rh1BG288400

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
42442421 .. 42448177
5757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG288400.1

Sequence Viewer

Length: 2334 bp
ATGGCCGTCCCCCACGCAACTGTAGATATGACTACTGTGAACAACTCGGAAGAGACATTCCCATGTAGCATAAATGCTATGGCTCCACAGTCAAATTCAGACGCAGCAAAAGGAAAATGGCTAATACTAGACAAAATTCTGGACCCTAAGGGACCATTCCTTCAAAAGTGGAATATGATGTTAGTAGTATCTTGCGTGCTCGCTGTTTTGCTGGATCCATTGTTCCTCTACACCCCTATCCTAAACGATGACATGAAGTGCATTGGACTAGATTCAAACTTGAAGATAGCAGCTGTGGTTCTACGATCGCTTACCGATCTCGTTTATATAGTCAAAATTACTTTTCAAATCTATGAGCTTCAGAAATTAACAGCTAAGAAGATTTGGGAGTCATGCATCCTGCTTGTTGACATTTTAGCAGTTCTTCCCATTCCACAGGTACTAATCATCGTTTTCTTTACAAAAATGAGGGGTTCGGGATTGAATACAATTATTATGAACTTTCTCGTTCTAATCCAATATGTGCCACGAGTAATTTGCATCTACTATGCTTGTAAAGAATTTGAAATCGCGAGCTCTCTTAAAAAGTGGGAATCATGGCTTAATGGTGGACTCATTTTCTTCATGTACATCCTTGCTAGCAATGCATTCGGAGCTTTTTGGTATTTCTTCTCTATCCAACGAATGATAGATTGCTGGCAATCTGCTTGCCACTCGCTAAATGATCATAATGACTGTAAATCTGGTGCTTTCCAATGTCACAATCAACCTACTATTGGAAGAACCGCATTGGCATATGATTTGTGTCCGATAGACCCACAAAATGTAACACTCTTTGATTTCGGCATATTTCTCAATGTCCTTCAACCTGGAATAGCTGGATCAACAAATTATTTACAAAAGTTAACAAATTGTTTGTTGTGGGCCCTAAGAAATTTGAGTTCATTTGGTTCGAACCTCCAGCCCAGTATTAGTTTATGGGAAAACCTTTTTGCGACTTCTGTTTCTATCATTGGCTTGCTCCTGTTTCTATATCTCATTGGAAAATTACAGATATATATGGGAACGGAAACATCACTCAAAGTGGAAGAAAGATGCAAGAAAGAAGTTGAAGTGAAGAGGAAAATTAAACTAAGGAATAAATTTGAACCGAAGATAGAATCATGGTTAGATAAAAATGAACTGGATCACAGCCTTTTCAAGTCAAAGGTTGAGAAAGACGTGGTAGATAAAGCAGTGCAAAGCAAGAAGGATGATGTTGATGAGAATGAAATCCTCCGCAATCTTTCTCCTGATCTTCGAGTTCAGATAAAAAATGAAAAGAATGCGAAAGAGATAGATTCGTGGCTAAGAAAAAACCACCTCGACCCAGACCGACCTGATCTTCATTTTAAGTCCAATATCGTGAAAGCAGTAGAAGAAAAACGTAAACAAAATCCAGAATTTGACTTGGATCCGAATAATATCCTCTCAATTGTTCCCGATGGCATTCGAACTGAAATCACGGACAGGATATATAAGTCGATGGCTAGGCTGAAGCAGGTACCACTTCTTCAAGATGTGAATGAACGAGGATTGAAAATAACCTCTGAGAAACTTAAACTCCAGAAGTATACAAAGTCAAAGCGGGGCCAGTCAAAGCCTATTATTAAAGAGCAGGAATCGCTTAAAATGATATTCATCGTTGATGGAGTTGCAAGTATTGAAAAGAGATATTGTCTTACTCGTTGGGAGATAAAAGCAGGAGAATTCTATGGGGATGAGCTCCTACATCGGCCATCAGCCCGAGCAACCGAGTCCGTTATTCCCAAAACTGAAGTTCAAGCCCTGATTCTTGAGGCCGAAGCTTGGCAGAGTGTGGTGTCTGAGAACAAGCTGCATATTAGCAAAGAGATCACTATTTCGTCAAAATATGACATCAACCTTTTGTCCATGCTAAAGAGTGTGCCAGAACTAGAAAAGTATGATGAAAATTTTCTGAAGGCAATCAGTGAGGTCCTTCGGCGAGAGAGCTATGACGTCATCGGGTCGCAAATTATTACAGAGAACGACGAACTGATGAACAAGATGTTTTTGGTCACGCGTGGGGAAGTAGGTGTAACAAGGCCTGGTAAAAGGAACAGGAGACTGTATAAGGTTGGAGCGCTCTACGGAGAAGAACTTCTGGATTGGGCGTTGGATGTGTTGCATACGGGAACGGCGTCTTCTCTCCCCTTATCGGCCTGTACTGCTTCGTCGACCAAAGCTGAAGTTGACGTCCTCGTTCTCTACGCCACGGAATTGGAGAAGAAGATGAAGGAGTTAGCTGCTACTGATTCTGAGTCGGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

777

Amino Acids

88.46

Weight (kDa)

6.82

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 2022, 2259
Acc36I ACCTGC 1 cut(s) 1531
Acc65I GGTACC 1 cut(s) 1543
AccB1I GGYRCC 1 cut(s) 1543
AccI GTMKAC 2 cut(s) 1613, 2237
AccII CGCG 2 cut(s) 572, 2083
AciI CCGC 3 cut(s) 786, 1279, 1627
AclWI GGATC 6 cut(s) 209, 222, 889, 1194, 1448, 1461
AcoI YGGCCR 2 cut(s) 3, 1775
AcsI RAATTY 8 cut(s) 94, 135, 560, 934, 1142, 1442, 1748, 1972
AcuI CTGAAG 5 cut(s) 344, 1556, 1836, 2000, 2268
AcyI GRCGYC 3 cut(s) 2019, 2201, 2256
AfaI GTAC 4 cut(s) 441, 629, 1545, 2227
AfeI AGCGCT 1 cut(s) 2145
AfiI CCNNNNNNNGG 3 cut(s) 776, 1848, 2218
AflIII ACRYGT 1 cut(s) 2081
AjiI CACGTC 1 cut(s) 1222
AjnI CCWGG 2 cut(s) 868, 2107
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
Alw21I GWGCWC 3 cut(s) 201, 578, 1767
Alw26I GTCTC 2 cut(s) 47, 2119
AlwI GGATC 6 cut(s) 209, 222, 889, 1194, 1448, 1461
Ama87I CYCGRG 1 cut(s) 1785
Aor51HI AGCGCT 1 cut(s) 2145
AoxI GGCC 7 cut(s) 3, 924, 1630, 1775, 1839, 2105, 2220
ApaI GGGCCC 1 cut(s) 928
ApeKI GCWGC 4 cut(s) 104, 290, 1876, 2306
ApoI RAATTY 8 cut(s) 94, 135, 560, 934, 1142, 1442, 1748, 1972
Asp700I GAANNNNTTC 2 cut(s) 1974, 2160
Asp718I GGTACC 1 cut(s) 1543
AspLEI GCGC 1 cut(s) 2146
AspS9I GGNCC 6 cut(s) 142, 152, 924, 925, 1630, 1996
AsuII TTCGAA 2 cut(s) 953, 1492
AsuNHI GCTAGC 1 cut(s) 638
AvaI CYCGRG 1 cut(s) 1785
AvaII GGWCC 3 cut(s) 142, 152, 1996
AxyI CCTNAGG 1 cut(s) 147
BaeGI GKGCMC 1 cut(s) 928
BamHI GGATCC 2 cut(s) 214, 1453
BanI GGYRCC 1 cut(s) 1543
BanII GRGCYC 3 cut(s) 578, 928, 1767
BarI GAAGNNNNNNTAC 2 cut(s) 1536, 1568
BauI CACGAG 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 2196
Bbv12I GWGCWC 3 cut(s) 201, 578, 1767
BbvI GCAGC 4 cut(s) 116, 302, 1863, 2293
BccI CCATC 4 cut(s) 1478, 1519, 1682, 1786
BceAI ACGGC 1 cut(s) 2214
BcgI CGANNNNNNTGC 4 cut(s) 519, 553, 631, 665
BciT130I CCWGG 2 cut(s) 870, 2109
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 2 cut(s) 47, 2119
BfaI CTAG 5 cut(s) 128, 269, 639, 1530, 1955
BfmI CTRYAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 2147
BfuAI ACCTGC 1 cut(s) 1531
BisI GCNGC 4 cut(s) 105, 291, 1877, 2307
BlsI GCNGC 4 cut(s) 106, 292, 1878, 2308
Bme1390I CCNGG 2 cut(s) 870, 2109
Bme18I GGWCC 3 cut(s) 142, 152, 1996
BmeT110I CYCGRG 1 cut(s) 1785
BmgBI CACGTC 1 cut(s) 1222
BmgT120I GGNCC 6 cut(s) 142, 152, 924, 925, 1630, 1996
BmiI GGNNCC 8 cut(s) 84, 144, 153, 216, 926, 1455, 1545, 1631
BmrFI CCNGG 2 cut(s) 870, 2109
BmrI ACTGGG 1 cut(s) 960
BmsI GCATC 3 cut(s) 405, 549, 1085
BmtI GCTAGC 1 cut(s) 642
BmuI ACTGGG 1 cut(s) 960
BpiI GAAGAC 1 cut(s) 2196
BpmI CTGGAG 2 cut(s) 944, 1589
Bpu14I TTCGAA 2 cut(s) 953, 1492
BpuEI CTTGAG 1 cut(s) 1856
BsaBI GATNNNNATC 1 cut(s) 1679
BsaHI GRCGYC 3 cut(s) 2019, 2201, 2256
BsaJI CCNNGG 1 cut(s) 2274
BsaXI ACNNNNNCTCC 2 cut(s) 1587, 1617
Bsc4I CCNNNNNNNGG 3 cut(s) 776, 1848, 2218
Bse1I ACTGG 3 cut(s) 966, 1188, 1633
Bse21I CCTNAGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 649
Bse8I GATNNNNATC 1 cut(s) 1679
BseBI CCWGG 2 cut(s) 870, 2109
BseDI CCNNGG 1 cut(s) 2274
BseGI GGATG 5 cut(s) 396, 630, 1258, 1765, 2185
BseJI GATNNNNATC 1 cut(s) 1679
BseLI CCNNNNNNNGG 3 cut(s) 776, 1848, 2218
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 3 cut(s) 1581, 1857, 2310
BseNI ACTGG 3 cut(s) 966, 1188, 1633
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 4 cut(s) 116, 302, 1863, 2293
Bsh1236I CGCG 2 cut(s) 572, 2083
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 7 cut(s) 5, 926, 1632, 1777, 1841, 2107, 2222
BshNI GGYRCC 1 cut(s) 1543
BsiEI CGRYCG 1 cut(s) 308
BsiHKAI GWGCWC 3 cut(s) 201, 578, 1767
BsiHKCI CYCGRG 1 cut(s) 1785
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 3 cut(s) 776, 1848, 2218
BsmAI GTCTC 2 cut(s) 47, 2119
BsmFI GGGAC 1 cut(s) 165
BsmI GAATGC 3 cut(s) 647, 1330, 1488
BsnI GGCC 7 cut(s) 5, 926, 1632, 1777, 1841, 2107, 2222
BsoBI CYCGRG 1 cut(s) 1785
Bsp119I TTCGAA 2 cut(s) 953, 1492
Bsp120I GGGCCC 1 cut(s) 924
Bsp1286I GDGCHC 4 cut(s) 201, 578, 928, 1767
Bsp1407I TGTACA 1 cut(s) 627
Bsp68I TCGCGA 1 cut(s) 572
BspACI CCGC 3 cut(s) 786, 1279, 1627
BspANI GGCC 7 cut(s) 5, 926, 1632, 1777, 1841, 2107, 2222
BspCNI CTCAG 3 cut(s) 1582, 1858, 2311
BspFNI CGCG 2 cut(s) 572, 2083
BspLI GGNNCC 8 cut(s) 84, 144, 153, 216, 926, 1455, 1545, 1631
BspMI ACCTGC 1 cut(s) 1531
BspOI GCTAGC 1 cut(s) 642
BspPI GGATC 6 cut(s) 209, 222, 889, 1194, 1448, 1461
BspT104I TTCGAA 2 cut(s) 953, 1492
BspT107I GGYRCC 1 cut(s) 1543
BsrDI GCAATG 1 cut(s) 649
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 3 cut(s) 966, 1188, 1633
BssECI CCNNGG 1 cut(s) 2274
BssNAI GTATAC 1 cut(s) 1614
BssNI GRCGYC 3 cut(s) 2019, 2201, 2256
BssSI CACGAG 1 cut(s) 528
Bst1107I GTATAC 1 cut(s) 1614
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 2 cut(s) 870, 2109
Bst4CI ACNGT 5 cut(s) 22, 37, 90, 737, 2130
Bst6I CTCTTC 2 cut(s) 45, 1112
BstACI GRCGYC 3 cut(s) 2019, 2201, 2256
BstAUI TGTACA 1 cut(s) 627
BstBI TTCGAA 2 cut(s) 953, 1492
BstC8I GCNNGC 7 cut(s) 197, 201, 574, 640, 698, 709, 1019
BstDEI CTNAG 8 cut(s) 147, 375, 929, 1133, 1349, 1590, 1866, 2319
BstDSI CCRYGG 1 cut(s) 2274
BstF5I GGATG 5 cut(s) 396, 630, 1258, 1765, 2185
BstFNI CGCG 2 cut(s) 572, 2083
BstH2I RGCGCY 1 cut(s) 2147
BstHHI GCGC 1 cut(s) 2146
BstMAI GTCTC 2 cut(s) 47, 2119
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 4 cut(s) 644, 653, 1663, 2228
BstNI CCWGG 2 cut(s) 870, 2109
BstSCI CCNGG 2 cut(s) 868, 2107
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 928
BstUI CGCG 2 cut(s) 572, 2083
BstV1I GCAGC 4 cut(s) 116, 302, 1863, 2293
BstV2I GAAGAC 1 cut(s) 2196
BstX2I RGATCY 2 cut(s) 214, 1453
BstXI CCANNNNNNTGG 1 cut(s) 2281
BstYI RGATCY 2 cut(s) 214, 1453
BstZ17I GTATAC 1 cut(s) 1614
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 7 cut(s) 5, 926, 1632, 1777, 1841, 2107, 2222
BtgI CCRYGG 1 cut(s) 2274
BtrI CACGTC 1 cut(s) 1222
BtsCI GGATG 5 cut(s) 396, 630, 1258, 1765, 2185
BtsI GCAGTG 1 cut(s) 1242
BtsIMutI CAGTG 2 cut(s) 1242, 1996
BtuMI TCGCGA 1 cut(s) 572
BveI ACCTGC 1 cut(s) 1531
Cac8I GCNNGC 7 cut(s) 197, 201, 574, 640, 698, 709, 1019
CfoI GCGC 1 cut(s) 2146
Cfr13I GGNCC 6 cut(s) 142, 152, 924, 925, 1630, 1996
CseI GACGC 2 cut(s) 110, 2190
Csp6I GTAC 4 cut(s) 440, 628, 1544, 2226
CviAII CATG 7 cut(s) 63, 253, 393, 597, 625, 1164, 1933
CviQI GTAC 4 cut(s) 440, 628, 1544, 2226
DdeI CTNAG 8 cut(s) 147, 375, 929, 1133, 1349, 1590, 1866, 2319
EaeI YGGCCR 2 cut(s) 3, 1775
Eam1104I CTCTTC 2 cut(s) 45, 1112
EarI CTCTTC 2 cut(s) 45, 1112
Ecl136II GAGCTC 2 cut(s) 576, 1765
Eco147I AGGCCT 1 cut(s) 2107
Eco24I GRGCYC 3 cut(s) 578, 928, 1767
Eco47I GGWCC 3 cut(s) 142, 152, 1996
Eco47III AGCGCT 1 cut(s) 2145
Eco53kI GAGCTC 2 cut(s) 576, 1765
Eco57I CTGAAG 5 cut(s) 344, 1556, 1836, 2000, 2268
Eco81I CCTNAGG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 1785
EcoICRI GAGCTC 2 cut(s) 576, 1765
EcoO109I RGGNCCY 2 cut(s) 925, 1996
EcoRI GAATTC 1 cut(s) 1748
EcoRII CCWGG 2 cut(s) 868, 2107
EcoT22I ATGCAT 2 cut(s) 398, 649
EcoT38I GRGCYC 3 cut(s) 578, 928, 1767
FaeI CATG 7 cut(s) 66, 256, 396, 600, 628, 1167, 1936
FaqI GGGAC 1 cut(s) 165
FatI CATG 7 cut(s) 62, 252, 392, 596, 624, 1163, 1932
FauI CCCGC 1 cut(s) 1620
FauNDI CATATG 1 cut(s) 796
FbaI TGATCA 1 cut(s) 724
FblI GTMKAC 2 cut(s) 1613, 2237
Fnu4HI GCNGC 4 cut(s) 105, 291, 1877, 2307
FokI GGATG 5 cut(s) 383, 617, 1265, 1772, 2192
FriOI GRGCYC 3 cut(s) 578, 928, 1767
Fsp4HI GCNGC 4 cut(s) 105, 291, 1877, 2307
FspBI CTAG 5 cut(s) 128, 269, 639, 1530, 1955
GlaI GCGC 1 cut(s) 2145
GluI GCNGC 4 cut(s) 105, 291, 1877, 2307
GsuI CTGGAG 2 cut(s) 944, 1589
HaeII RGCGCY 1 cut(s) 2147
HaeIII GGCC 7 cut(s) 5, 926, 1632, 1777, 1841, 2107, 2222
HgaI GACGC 2 cut(s) 110, 2190
HhaI GCGC 1 cut(s) 2146
Hin1I GRCGYC 3 cut(s) 2019, 2201, 2256
Hin1II CATG 7 cut(s) 66, 256, 396, 600, 628, 1167, 1936
Hin6I GCGC 1 cut(s) 2144
HinP1I GCGC 1 cut(s) 2144
HincII GTYRAC 4 cut(s) 409, 906, 2238, 2254
HindII GTYRAC 4 cut(s) 409, 906, 2238, 2254
HindIII AAGCTT 1 cut(s) 1845
HpaI GTTAAC 1 cut(s) 906
Hpy166II GTNNAC 8 cut(s) 40, 409, 611, 906, 1430, 1614, 2238, 2254
Hpy8I GTNNAC 8 cut(s) 40, 409, 611, 906, 1430, 1614, 2238, 2254
Hpy99I CGWCG 2 cut(s) 2054, 2239
HpyAV CCTTC 6 cut(s) 170, 872, 1243, 1975, 2009, 2290
HpyCH4III ACNGT 5 cut(s) 22, 37, 90, 737, 2130
HpyCH4IV ACGT 4 cut(s) 1221, 1426, 2019, 2256
HpyCH4V TGCA 9 cut(s) 261, 396, 540, 647, 1098, 1240, 1697, 1879, 2188
HpyF10VI GCNNNNNNNGC 4 cut(s) 644, 653, 1663, 2228
HpyF3I CTNAG 8 cut(s) 147, 375, 929, 1133, 1349, 1590, 1866, 2319
HpySE526I ACGT 4 cut(s) 1221, 1426, 2019, 2256
Hsp92I GRCGYC 3 cut(s) 2019, 2201, 2256
Hsp92II CATG 7 cut(s) 66, 256, 396, 600, 628, 1167, 1936
HspAI GCGC 1 cut(s) 2144
KpnI GGTACC 1 cut(s) 1547
Ksp22I TGATCA 1 cut(s) 724
KspAI GTTAAC 1 cut(s) 906
LmnI GCTCC 5 cut(s) 88, 653, 1026, 1770, 2141
Lsp1109I GCAGC 4 cut(s) 116, 302, 1863, 2293
LweI GCATC 3 cut(s) 405, 549, 1085
MaeI CTAG 5 cut(s) 128, 269, 639, 1530, 1955
MaeII ACGT 4 cut(s) 1221, 1426, 2019, 2256
MaeIII GTNAC 4 cut(s) 758, 826, 2077, 2098
MfeI CAATTG 1 cut(s) 1473
MflI RGATCY 2 cut(s) 214, 1453
MhlI GDGCHC 4 cut(s) 201, 578, 928, 1767
MluI ACGCGT 1 cut(s) 2081
MlyI GAGTC 4 cut(s) 398, 606, 1805, 2330
MmeI TCCRAC 4 cut(s) 703, 2119, 2157, 2304
Mph1103I ATGCAT 2 cut(s) 398, 649
MroXI GAANNNNTTC 2 cut(s) 1974, 2160
MslI CAYNNNNRTG 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 870, 2109
MunI CAATTG 1 cut(s) 1473
Mva1269I GAATGC 3 cut(s) 647, 1330, 1488
MvaI CCWGG 2 cut(s) 870, 2109
MvnI CGCG 2 cut(s) 572, 2083
MwoI GCNNNNNNNGC 4 cut(s) 644, 653, 1663, 2228
NdeI CATATG 1 cut(s) 796
NheI GCTAGC 1 cut(s) 638
NlaIII CATG 7 cut(s) 66, 256, 396, 600, 628, 1167, 1936
NlaIV GGNNCC 8 cut(s) 84, 144, 153, 216, 926, 1455, 1545, 1631
NmuCI GTSAC 2 cut(s) 758, 2077
NruI TCGCGA 1 cut(s) 572
NsiI ATGCAT 2 cut(s) 398, 649
NspV TTCGAA 2 cut(s) 953, 1492
PceI AGGCCT 1 cut(s) 2107
PcsI WCGNNNNNNNCGW 1 cut(s) 2198
PctI GAATGC 3 cut(s) 647, 1330, 1488
PdmI GAANNNNTTC 2 cut(s) 1974, 2160
PfeI GAWTC 7 cut(s) 272, 593, 1160, 1340, 1661, 1831, 2315
PkrI GCNGC 4 cut(s) 106, 292, 1878, 2308
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 4 cut(s) 397, 606, 1804, 2329
PpsI GAGTC 4 cut(s) 397, 606, 1804, 2329
PpuMI RGGWCCY 1 cut(s) 1996
Psp124BI GAGCTC 2 cut(s) 578, 1767
Psp5II RGGWCCY 1 cut(s) 1996
Psp6I CCWGG 2 cut(s) 868, 2107
PspGI CCWGG 2 cut(s) 868, 2107
PspN4I GGNNCC 8 cut(s) 84, 144, 153, 216, 926, 1455, 1545, 1631
PspOMI GGGCCC 1 cut(s) 924
PspPI GGNCC 6 cut(s) 142, 152, 924, 925, 1630, 1996
PspPPI RGGWCCY 1 cut(s) 1996
PsuI RGATCY 2 cut(s) 214, 1453
PvuI CGATCG 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 293
RruI TCGCGA 1 cut(s) 572
RsaI GTAC 4 cut(s) 441, 629, 1545, 2227
RsaNI GTAC 4 cut(s) 440, 628, 1544, 2226
RseI CAYNNNNRTG 1 cut(s) 61
SacI GAGCTC 2 cut(s) 578, 1767
SalI GTCGAC 1 cut(s) 2236
SatI GCNGC 4 cut(s) 105, 291, 1877, 2307
Sau96I GGNCC 6 cut(s) 142, 152, 924, 925, 1630, 1996
SchI GAGTC 4 cut(s) 398, 606, 1805, 2330
ScrFI CCNGG 2 cut(s) 870, 2109
SduI GDGCHC 4 cut(s) 201, 578, 928, 1767
SfaNI GCATC 3 cut(s) 405, 549, 1085
SfcI CTRYAG 1 cut(s) 21
SfuI TTCGAA 2 cut(s) 953, 1492
SinI GGWCC 3 cut(s) 142, 152, 1996
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 1835
SmoI CTYRAG 1 cut(s) 1835
SseBI AGGCCT 1 cut(s) 2107
SsiI CCGC 3 cut(s) 786, 1279, 1627
SspMI CTAG 5 cut(s) 128, 269, 639, 1530, 1955
SstI GAGCTC 2 cut(s) 578, 1767
StuI AGGCCT 1 cut(s) 2107
StyD4I CCNGG 2 cut(s) 868, 2107
TaaI ACNGT 5 cut(s) 22, 37, 90, 737, 2130
TaiI ACGT 4 cut(s) 1224, 1429, 2022, 2259
TaqI TCGA 6 cut(s) 953, 1300, 1365, 1492, 1523, 2237
TaqII GACCGA 1 cut(s) 1389
TatI WGTACW 2 cut(s) 627, 2225
TfiI GAWTC 7 cut(s) 272, 593, 1160, 1340, 1661, 1831, 2315
TscAI CASTG 2 cut(s) 1242, 1996
TseFI GTSAC 2 cut(s) 758, 2077
TseI GCWGC 4 cut(s) 104, 290, 1876, 2306
Tsp45I GTSAC 2 cut(s) 758, 2077
TspGWI ACGGA 5 cut(s) 1082, 1520, 1789, 2166, 2291
TspRI CASTG 2 cut(s) 1242, 1996
VpaK11BI GGWCC 3 cut(s) 142, 152, 1996
XapI RAATTY 8 cut(s) 94, 135, 560, 934, 1142, 1442, 1748, 1972
XmiI GTMKAC 2 cut(s) 1613, 2237
XmnI GAANNNNTTC 2 cut(s) 1974, 2160
XspI CTAG 5 cut(s) 128, 269, 639, 1530, 1955
ZraI GACGTC 2 cut(s) 2020, 2257
Zsp2I ATGCAT 2 cut(s) 398, 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.