RchiOBHm_Chr1g0381221

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000017
Physical Location & Seq
Reverse (-)
66634917 .. 66638302
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60442

Sequence Viewer

Length: 2028 bp
ATGGCTAGCAATGAAGTAACTCTAAATGTAGATGAGCAGGAAGAAGAGAAAACTCAGAGCAAGTTGACTACTGCAACAGCGAAATCTACCCCAAAAGATGGAGGACATGCAAGAGATACAAGAAAAATTAAAAGATGGTTATCCTTTAACACAATTTTCGATCCAAAAGGGAAGTTCCTTCTGACGTGGAACAACATATTTGTAGTATCTTGTGTGTTTGCTGTCTCCTTTGATCCTTTGTTCTTCTACATTCCGATCATTAACCAGAAGCGGAAGTGTCTATATTTTGACACAAGGTTGAAGGCCATAGCCCTCATCTTGAGGTTACTCACAGATCAATTCTACATTGCGGACATTATTATGCGAATTTTGATTAGTATACTTAAAACCAAGTCATCCAAGGAATCTGGGGAGACCAAAACACAAGCGGAAGCTCGTAATTCCAAAGGGAATATAACAGATGAGACAGTTTTTGCAATAGCTAAGAAGGCTTGGGAGAAAGTTAATAGATCATACATCCTCATTGACATTTTAGCTATTCTTCCCATACCCCAGGTGGGAATGTTCGTTTTCTTTTCGAAAATGAAGGGTCCGCGATTTTCGATAGAAAGGAAGCTTTTCGACACACTTATTTTGTTCCAATTTGTCCCACGCGTTCTTCCCGTTTACTTATTGTGCAGAGAACGTAAGAAAACTCTTAATAAAGCAGGCATGTGGACAAAAGGTGTTTTCAATTTCTTTCTATACATCCTTGCAAGTCATGCACTTGGAGCTCTTTGGTACTTATTTGCTATTCAACGGGAGATGGATTGTTGGCATTATGTTTGCCAACGTCACAAGGGATGTCAACCTAGTACCTTTAGTTGTAGTGAACGACGAGATAGATTGAGAACTATCCCATCGTTAGACAAAGAATGTCCAATAAACCTACCGGAAGAAATGAAAGGAAATGCTTTTAATTTTGGTATATTTGCTGATGCGCTTGACTCCGGCCTAGTGCAGTCGACTGATTTTCCTAAAAAATTCTTGAATTGTTTCTGGTGGGGGCTGCGAAATCTGAGCTCTCTTGGTCAAAACCTCCATACAAGTACCTATGCATGGGAAAACCTCTTTGCTGTGTTTATTTCCATTATAGGCTTGCTATTGTTTATATATCTCATCGGAAATTTGCAGACATATTTGCAGTTTGCAACTACAAGATCAGAGAAGATTAGACGGAAGATGAAAACGAAAAAGTTAGAGGTTGATTTGTGGCTATTTAGAAAAGGACTGCCTAGCAATTTGAAGGAAGTGATAATGCAATTCATACAAAAAAAACTTGAACAGAACAATGATGTTCAAGTTGAGAACATCCTCTCTGTTCTTCCTTCAGCACATAGTAAATATATCAAGCGGTATCTTCGGTTGGCTACACTCAAGAAAGTGCCAATGCTTCAAACTAAGGGGGAAAGTCTGCAGAAAGCACTCTGTCAGCACCTCGAGCGGGTGGACTATCCTGAGGACCGTTGCATTATTAAAGACGGAGAGCGACTCAATAAGATGATTTTCATCACACATGGCACTGTACAGACCTACAAGACCAATGATAAGGGTGGAAAATTTGGTTCCAAGTTTCTTGAGAAAGGGGACTTCTATGGATCAGAAGAGCTTCTCAATTGGGCATCAAAGTTGAGCTTTTCCGACGACTTACCAATCTCGACCAGAATGGTTAAGACTGTTACGAAAGTCGAAGCCTTTGCGCTGAGCTCAGAAAACTTGAAGCCTGTAGCCACCAAGTACTGGTGGAATTTCACCAAGGACAAGGAGCTAAGTAGTTTCAGCGAGTCTCTGCTGAAGGAGCTTGCAGTATCTTCCATAGAAAAGGAAATCCATCGCCGCAGGCAAGCAAAAAAGAAGCAAACAATAAGTTCTCTCCATAAGTTGGCTACTAATCAGGGTGGTGCTAGCAAGAAGTGGCAACGGGTCATGACCTTACTGATGAGGGATCAGATACCTTCACCGGTTGGTGCTCTAGCGACAAGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

675

Amino Acids

77.86

Weight (kDa)

9.71

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 63 - 401 2.9e-10 Ion transport protein
cNMP_binding PF00027 496 - 554 1.8e-06 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 98, 1779, 1921
AccBSI CCGCTC 1 cut(s) 1483
AccI GTMKAC 2 cut(s) 379, 1004
AccII CGCG 2 cut(s) 595, 654
AciI CCGC 7 cut(s) 271, 350, 428, 593, 1393, 1483, 1876
AclWI GGATC 4 cut(s) 155, 227, 1645, 1992
AcsI RAATTY 5 cut(s) 366, 1022, 1165, 1598, 1786
AcuI CTGAAG 2 cut(s) 1353, 1853
AfaI GTAC 5 cut(s) 782, 856, 1090, 1566, 1778
AfiI CCNNNNNNNGG 6 cut(s) 98, 557, 1098, 1483, 1779, 1921
AflIII ACRYGT 1 cut(s) 652
AgeI ACCGGT 1 cut(s) 1999
AgsI TTSAA 9 cut(s) 301, 733, 797, 1030, 1285, 1322, 1340, 1436, 1759
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 552
Alw21I GWGCWC 4 cut(s) 775, 1064, 1748, 2011
Alw26I GTCTC 4 cut(s) 229, 407, 458, 1830
AlwI GGATC 4 cut(s) 155, 227, 1645, 1992
Ama87I CYCGRG 1 cut(s) 1478
AoxI GGCC 2 cut(s) 303, 991
ApeKI GCWGC 1 cut(s) 1048
ApoI RAATTY 5 cut(s) 366, 1022, 1165, 1598, 1786
AsiGI ACCGGT 1 cut(s) 1999
Asp700I GAANNNNTTC 3 cut(s) 617, 1034, 1647
AspLEI GCGC 2 cut(s) 982, 1741
AspS9I GGNCC 2 cut(s) 590, 1501
AsuHPI GGTGA 2 cut(s) 1783, 1989
AsuII TTCGAA 1 cut(s) 578
AsuNHI GCTAGC 2 cut(s) 5, 1943
AvaI CYCGRG 1 cut(s) 1478
AvaII GGWCC 2 cut(s) 590, 1501
AxyI CCTNAGG 1 cut(s) 1497
BanII GRGCYC 3 cut(s) 775, 1064, 1748
Bbv12I GWGCWC 4 cut(s) 775, 1064, 1748, 2011
BbvI GCAGC 1 cut(s) 1035
BccI CCATC 5 cut(s) 92, 129, 799, 907, 1878
BcgI CGANNNNNNTGC 2 cut(s) 1718, 1752
BciT130I CCWGG 1 cut(s) 554
BcoDI GTCTC 4 cut(s) 229, 407, 458, 1830
BfaI CTAG 6 cut(s) 6, 852, 995, 1275, 1944, 2012
BfmI CTRYAG 2 cut(s) 1454, 1764
BisI GCNGC 2 cut(s) 1049, 1876
BlpI GCTNAGC 1 cut(s) 1742
BlsI GCNGC 2 cut(s) 1050, 1877
BmcAI AGTACT 1 cut(s) 1778
Bme1390I CCNGG 1 cut(s) 554
Bme18I GGWCC 2 cut(s) 590, 1501
BmeT110I CYCGRG 1 cut(s) 1478
BmgBI CACGTC 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 590, 1501
BmiI GGNNCC 2 cut(s) 591, 1606
BmrFI CCNGG 1 cut(s) 554
BmsI GCATC 2 cut(s) 967, 1670
BmtI GCTAGC 2 cut(s) 9, 1947
BplI GAGNNNNNCTC 2 cut(s) 1515, 1547
Bpu1102I GCTNAGC 1 cut(s) 1742
Bpu14I TTCGAA 1 cut(s) 578
BpuEI CTTGAG 3 cut(s) 340, 1400, 1637
BsaBI GATNNNNATC 2 cut(s) 139, 1547
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 3 cut(s) 399, 552, 1794
BsaWI WCCGGW 2 cut(s) 931, 1999
Bsc4I CCNNNNNNNGG 6 cut(s) 98, 557, 1098, 1483, 1779, 1921
Bse118I RCCGGY 1 cut(s) 1999
Bse1I ACTGG 1 cut(s) 1784
Bse21I CCTNAGG 1 cut(s) 1497
Bse3DI GCAATG 2 cut(s) 16, 345
Bse8I GATNNNNATC 2 cut(s) 139, 1547
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 3 cut(s) 399, 552, 1794
BseGI GGATG 5 cut(s) 395, 516, 747, 848, 1350
BseJI GATNNNNATC 2 cut(s) 139, 1547
BseLI CCNNNNNNNGG 6 cut(s) 98, 557, 1098, 1483, 1779, 1921
BseMI GCAATG 2 cut(s) 16, 345
BseMII CTCAG 5 cut(s) 68, 1049, 1488, 1733, 1761
BseNI ACTGG 1 cut(s) 1784
BseXI GCAGC 1 cut(s) 1035
BsgI GTGCAG 2 cut(s) 697, 1019
Bsh1236I CGCG 2 cut(s) 595, 654
BshFI GGCC 2 cut(s) 305, 993
BshTI ACCGGT 1 cut(s) 1999
BsiHKAI GWGCWC 4 cut(s) 775, 1064, 1748, 2011
BsiHKCI CYCGRG 1 cut(s) 1478
BsiSI CCGG 3 cut(s) 932, 990, 2000
BslFI GGGAC 2 cut(s) 632, 1640
BslI CCNNNNNNNGG 6 cut(s) 98, 557, 1098, 1483, 1779, 1921
BsmAI GTCTC 4 cut(s) 229, 407, 458, 1830
BsmFI GGGAC 2 cut(s) 632, 1640
BsnI GGCC 2 cut(s) 305, 993
Bso31I GGTCTC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 1478
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 4 cut(s) 775, 1064, 1748, 2011
Bsp1407I TGTACA 1 cut(s) 1564
Bsp143I GATC 8 cut(s) 160, 232, 255, 334, 509, 1199, 1637, 1984
Bsp1720I GCTNAGC 1 cut(s) 1742
BspACI CCGC 7 cut(s) 271, 350, 428, 593, 1393, 1483, 1876
BspANI GGCC 2 cut(s) 305, 993
BspCNI CTCAG 5 cut(s) 67, 1050, 1489, 1734, 1760
BspFNI CGCG 2 cut(s) 595, 654
BspHI TCATGA 1 cut(s) 1965
BspLI GGNNCC 2 cut(s) 591, 1606
BspMAI CTGCAG 1 cut(s) 1458
BspOI GCTAGC 2 cut(s) 9, 1947
BspPI GGATC 4 cut(s) 155, 227, 1645, 1992
BspQI GCTCTTC 1 cut(s) 1638
BspT104I TTCGAA 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 1483
BsrDI GCAATG 2 cut(s) 16, 345
BsrFI RCCGGY 1 cut(s) 1999
BsrGI TGTACA 1 cut(s) 1564
BsrI ACTGG 1 cut(s) 1784
BssAI RCCGGY 1 cut(s) 1999
BssECI CCNNGG 3 cut(s) 399, 552, 1794
BssMI GATC 8 cut(s) 160, 232, 255, 334, 509, 1199, 1637, 1984
BssNAI GTATAC 1 cut(s) 380
BssT1I CCWWGG 2 cut(s) 399, 1794
Bst1107I GTATAC 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 4 cut(s) 469, 1505, 1564, 1717
Bst6I CTCTTC 2 cut(s) 39, 1638
BstAPI GCANNNNNTGC 1 cut(s) 761
BstAUI TGTACA 1 cut(s) 1564
BstBI TTCGAA 1 cut(s) 578
BstC8I GCNNGC 7 cut(s) 7, 709, 1139, 1842, 1880, 1884, 1945
BstDEI CTNAG 8 cut(s) 54, 483, 1058, 1440, 1497, 1742, 1747, 1808
BstF5I GGATG 5 cut(s) 395, 516, 747, 848, 1350
BstFNI CGCG 2 cut(s) 595, 654
BstHHI GCGC 2 cut(s) 982, 1741
BstKTI GATC 8 cut(s) 163, 235, 258, 337, 512, 1202, 1640, 1987
BstMAI GTCTC 4 cut(s) 229, 407, 458, 1830
BstMBI GATC 8 cut(s) 160, 232, 255, 334, 509, 1199, 1637, 1984
BstMWI GCNNNNNNNGC 5 cut(s) 488, 761, 770, 1480, 1837
BstNI CCWGG 1 cut(s) 554
BstNSI RCATGY 2 cut(s) 110, 715
BstSCI CCNGG 1 cut(s) 552
BstSFI CTRYAG 2 cut(s) 1454, 1764
BstUI CGCG 2 cut(s) 595, 654
BstV1I GCAGC 1 cut(s) 1035
BstZ17I GTATAC 1 cut(s) 380
Bsu36I CCTNAGG 1 cut(s) 1497
BsuRI GGCC 2 cut(s) 305, 993
BtgZI GCGATG 1 cut(s) 1856
BtrI CACGTC 1 cut(s) 186
BtsCI GGATG 5 cut(s) 395, 516, 747, 848, 1350
BtsIMutI CAGTG 1 cut(s) 1560
Cac8I GCNNGC 7 cut(s) 7, 709, 1139, 1842, 1880, 1884, 1945
CciI TCATGA 1 cut(s) 1965
CfoI GCGC 2 cut(s) 982, 1741
Cfr10I RCCGGY 1 cut(s) 1999
Cfr13I GGNCC 2 cut(s) 590, 1501
Csp6I GTAC 5 cut(s) 781, 855, 1089, 1565, 1777
CspAI ACCGGT 1 cut(s) 1999
CviAII CATG 6 cut(s) 107, 712, 761, 1098, 1556, 1966
CviQI GTAC 5 cut(s) 781, 855, 1089, 1565, 1777
DdeI CTNAG 8 cut(s) 54, 483, 1058, 1440, 1497, 1742, 1747, 1808
DpnI GATC 8 cut(s) 162, 234, 257, 336, 511, 1201, 1639, 1986
DpnII GATC 8 cut(s) 160, 232, 255, 334, 509, 1199, 1637, 1984
Eam1104I CTCTTC 2 cut(s) 39, 1638
EarI CTCTTC 2 cut(s) 39, 1638
Ecl136II GAGCTC 3 cut(s) 773, 1062, 1746
Eco130I CCWWGG 2 cut(s) 399, 1794
Eco24I GRGCYC 3 cut(s) 775, 1064, 1748
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 2 cut(s) 590, 1501
Eco53kI GAGCTC 3 cut(s) 773, 1062, 1746
Eco57I CTGAAG 2 cut(s) 1353, 1853
Eco81I CCTNAGG 1 cut(s) 1497
Eco88I CYCGRG 1 cut(s) 1478
EcoICRI GAGCTC 3 cut(s) 773, 1062, 1746
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 2 cut(s) 399, 1794
EcoT22I ATGCAT 1 cut(s) 1099
EcoT38I GRGCYC 3 cut(s) 775, 1064, 1748
ErhI CCWWGG 2 cut(s) 399, 1794
FaeI CATG 6 cut(s) 110, 715, 764, 1101, 1559, 1969
FalI AAGNNNNNCTT 2 cut(s) 1658, 1690
FaqI GGGAC 2 cut(s) 632, 1640
FatI CATG 6 cut(s) 106, 711, 760, 1097, 1555, 1965
FauI CCCGC 1 cut(s) 1476
FblI GTMKAC 2 cut(s) 379, 1004
Fnu4HI GCNGC 2 cut(s) 1049, 1876
FokI GGATG 5 cut(s) 382, 503, 734, 855, 1337
FriOI GRGCYC 3 cut(s) 775, 1064, 1748
Fsp4HI GCNGC 2 cut(s) 1049, 1876
FspBI CTAG 6 cut(s) 6, 852, 995, 1275, 1944, 2012
GlaI GCGC 2 cut(s) 981, 1740
GluI GCNGC 2 cut(s) 1049, 1876
HaeIII GGCC 2 cut(s) 305, 993
HapII CCGG 3 cut(s) 932, 990, 2000
HhaI GCGC 2 cut(s) 982, 1741
Hin1II CATG 6 cut(s) 110, 715, 764, 1101, 1559, 1969
Hin6I GCGC 2 cut(s) 980, 1739
HinP1I GCGC 2 cut(s) 980, 1739
HincII GTYRAC 3 cut(s) 66, 848, 1005
HindII GTYRAC 3 cut(s) 66, 848, 1005
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 4 cut(s) 404, 986, 1530, 1823
HpaII CCGG 3 cut(s) 932, 990, 2000
HphI GGTGA 2 cut(s) 1783, 1989
Hpy166II GTNNAC 8 cut(s) 66, 380, 667, 717, 848, 872, 1005, 1489
Hpy188III TCNNGA 7 cut(s) 319, 1027, 1417, 1496, 1616, 1696, 1966
Hpy8I GTNNAC 8 cut(s) 66, 380, 667, 717, 848, 872, 1005, 1489
Hpy99I CGWCG 2 cut(s) 879, 1685
HpyAV CCTTC 8 cut(s) 188, 295, 481, 580, 1279, 1377, 1828, 2004
HpyCH4III ACNGT 4 cut(s) 469, 1505, 1564, 1717
HpyCH4IV ACGT 3 cut(s) 185, 685, 832
HpyF10VI GCNNNNNNNGC 5 cut(s) 488, 761, 770, 1480, 1837
HpyF3I CTNAG 8 cut(s) 54, 483, 1058, 1440, 1497, 1742, 1747, 1808
HpySE526I ACGT 3 cut(s) 185, 685, 832
Hsp92II CATG 6 cut(s) 110, 715, 764, 1101, 1559, 1969
HspAI GCGC 2 cut(s) 980, 1739
Kzo9I GATC 8 cut(s) 160, 232, 255, 334, 509, 1199, 1637, 1984
LguI GCTCTTC 1 cut(s) 1638
LmnI GCTCC 3 cut(s) 770, 1804, 1837
Lsp1109I GCAGC 1 cut(s) 1035
LweI GCATC 2 cut(s) 967, 1670
MaeI CTAG 6 cut(s) 6, 852, 995, 1275, 1944, 2012
MaeII ACGT 3 cut(s) 185, 685, 832
MaeIII GTNAC 5 cut(s) 16, 324, 833, 1717, 2021
MalI GATC 8 cut(s) 162, 234, 257, 336, 511, 1201, 1639, 1986
MbiI CCGCTC 1 cut(s) 1483
MboI GATC 8 cut(s) 160, 232, 255, 334, 509, 1199, 1637, 1984
MfeI CAATTG 1 cut(s) 1654
MhlI GDGCHC 4 cut(s) 775, 1064, 1748, 2011
MluI ACGCGT 1 cut(s) 652
MlyI GAGTC 3 cut(s) 980, 1524, 1832
MmeI TCCRAC 1 cut(s) 1704
Mph1103I ATGCAT 1 cut(s) 1099
MroXI GAANNNNTTC 3 cut(s) 617, 1034, 1647
MseI TTAA 9 cut(s) 129, 147, 261, 384, 504, 699, 957, 1515, 1710
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 3 cut(s) 932, 990, 2000
MspR9I CCNGG 1 cut(s) 554
MunI CAATTG 1 cut(s) 1654
MvaI CCWGG 1 cut(s) 554
MvnI CGCG 2 cut(s) 595, 654
MwoI GCNNNNNNNGC 5 cut(s) 488, 761, 770, 1480, 1837
NdeII GATC 8 cut(s) 160, 232, 255, 334, 509, 1199, 1637, 1984
NheI GCTAGC 2 cut(s) 5, 1943
NlaIII CATG 6 cut(s) 110, 715, 764, 1101, 1559, 1969
NlaIV GGNNCC 2 cut(s) 591, 1606
NmuCI GTSAC 1 cut(s) 833
NsiI ATGCAT 1 cut(s) 1099
NspI RCATGY 2 cut(s) 110, 715
NspV TTCGAA 1 cut(s) 578
PaeR7I CTCGAG 1 cut(s) 1478
PagI TCATGA 1 cut(s) 1965
PciSI GCTCTTC 1 cut(s) 1638
PdmI GAANNNNTTC 3 cut(s) 617, 1034, 1647
PfeI GAWTC 1 cut(s) 404
PflMI CCANNNNNTGG 3 cut(s) 98, 1779, 1921
PinAI ACCGGT 1 cut(s) 1999
PkrI GCNGC 2 cut(s) 1050, 1877
PleI GAGTC 3 cut(s) 980, 1524, 1831
PpsI GAGTC 3 cut(s) 980, 1524, 1831
Psp124BI GAGCTC 3 cut(s) 775, 1064, 1748
Psp6I CCWGG 1 cut(s) 552
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 2 cut(s) 591, 1606
PspPI GGNCC 2 cut(s) 590, 1501
PspXI VCTCGAGB 1 cut(s) 1478
PstI CTGCAG 1 cut(s) 1458
RsaI GTAC 5 cut(s) 782, 856, 1090, 1566, 1778
RsaNI GTAC 5 cut(s) 781, 855, 1089, 1565, 1777
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 3 cut(s) 775, 1064, 1748
SalI GTCGAC 1 cut(s) 1003
SapI GCTCTTC 1 cut(s) 1638
SaqAI TTAA 9 cut(s) 129, 147, 261, 384, 504, 699, 957, 1515, 1710
SatI GCNGC 2 cut(s) 1049, 1876
Sau3AI GATC 8 cut(s) 160, 232, 255, 334, 509, 1199, 1637, 1984
Sau96I GGNCC 2 cut(s) 590, 1501
ScaI AGTACT 1 cut(s) 1778
SchI GAGTC 3 cut(s) 980, 1524, 1832
ScrFI CCNGG 1 cut(s) 554
SduI GDGCHC 4 cut(s) 775, 1064, 1748, 2011
SfaNI GCATC 2 cut(s) 967, 1670
SfcI CTRYAG 2 cut(s) 1454, 1764
Sfr274I CTCGAG 1 cut(s) 1478
SfuI TTCGAA 1 cut(s) 578
SinI GGWCC 2 cut(s) 590, 1501
SlaI CTCGAG 1 cut(s) 1478
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 4 cut(s) 319, 1415, 1478, 1616
SmoI CTYRAG 4 cut(s) 319, 1415, 1478, 1616
SsiI CCGC 7 cut(s) 271, 350, 428, 593, 1393, 1483, 1876
SspMI CTAG 6 cut(s) 6, 852, 995, 1275, 1944, 2012
SstI GAGCTC 3 cut(s) 775, 1064, 1748
StyD4I CCNGG 1 cut(s) 552
StyI CCWWGG 2 cut(s) 399, 1794
TaaI ACNGT 4 cut(s) 469, 1505, 1564, 1717
TaiI ACGT 3 cut(s) 188, 688, 835
TaqI TCGA 8 cut(s) 159, 578, 602, 621, 1004, 1479, 1697, 1728
TatI WGTACW 2 cut(s) 1564, 1776
TauI GCSGC 1 cut(s) 1878
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 9 cut(s) 129, 147, 261, 384, 504, 699, 957, 1515, 1710
Tru9I TTAA 9 cut(s) 129, 147, 261, 384, 504, 699, 957, 1515, 1710
TscAI CASTG 1 cut(s) 1567
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 1 cut(s) 1048
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 6 cut(s) 27, 599, 956, 1238, 1294, 1537
TspGWI ACGGA 2 cut(s) 1231, 1536
TspRI CASTG 1 cut(s) 1567
Van91I CCANNNNNTGG 3 cut(s) 98, 1779, 1921
VpaK11BI GGWCC 2 cut(s) 590, 1501
XapI RAATTY 5 cut(s) 366, 1022, 1165, 1598, 1786
XceI RCATGY 2 cut(s) 110, 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XhoI CTCGAG 1 cut(s) 1478
XmiI GTMKAC 2 cut(s) 379, 1004
XmnI GAANNNNTTC 3 cut(s) 617, 1034, 1647
XspI CTAG 6 cut(s) 6, 852, 995, 1275, 1944, 2012
ZrmI AGTACT 1 cut(s) 1778
Zsp2I ATGCAT 1 cut(s) 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.