Rh3AG128400

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000017
Physical Location & Seq
Forward (+)
11086700 .. 11098341
11642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG128400.1

Sequence Viewer

Length: 1488 bp
ATGGCTTCATCTGCAAAGTTCCAAAATAATTGCCCGCTTCAGCTTAATGATTCGGTACAAGTGGAGATGGGTGAAGTGTCTATTGACCATGCAAGCATGCCAGGAAATTCGATTTCAAAGATTGAAGAGCGGAAGTTGGCCATTATTAAAGAGCAGGATTCGGAGGATATGTCAAATATCGACATGCCTATTTTGTACATATTTAAGAAGATTATACATACAGTGTTTCTTATCCCAGCGGTGTTACTCGTAGCAATAATATCACCGGATGAGTCTCAATTTTTCATATTCTCTAGTTTCATCTCTATGTTACTGGATCCTTTGTTTCTGTACATTCCTCTCATCAAAGAGGAGACTAAGTGCCTCATGTTGGACAAGAAGTTGATGATAGCAGCTCTTATTCTGCGAATCGTCACAGATCTTCGCTATGTAATGAAAATAGGCTCTAAGATTAAAAAGTGGCGGGGATCTCCTAAGGAAATAGCTGGGAGCATCGCAACTGACGTTGTCGCTATTCTTCCTATTCCACAAGTTGTCGTCTTAGTTTTCCTTCCGAGAATGAGGAGCTCTGGATCTTTGAGTATAATGAAGTTTCTCAACTCGCTTATTCTATTCCAATATCTACAACGAGTTTATCCTATCTATAGATACTGCAAGAATCTTAACAAGAAGATACATTTGTCGAGTGCTCCTACACGGGCTTGGATACCAAGTTTATTCAATATTCTCATTTACATCCTTGCCAGTTATGTTGCTGGCAAATCAGAAAGGTCCCGTCAAAAGTGGAAAAAGATTTTGGAACCAAAAATAGAATCCATGTTATCTGAATATGACCTCCCTGCTAAAGTGAAAAAAAGCATAGACTATGTAGTAAAAAAGAAAGATTTAGAAGACCCAGATCTTCTTCTGGAGAATATGTCTTCAATTTTTACCTTCAAGCGTGAAGTAGATGACCAGACTTTACTAGCTGAATTAACTTCCATCAGACATAGTCTCTTCTTGGAGAAGTTAAAGAGACTCCATCGCCCAGGTACTTGCATGAACGATATGGTGTTGAAGGAGATATGTAAGCACCTTGATCCAGTGATCTATCCTAAGGGAAGCTATATTATCCACGAGGGGGAGCCTCTTGATATGATGTTCTTCATCACCCAGGGCATTGCACTCGAGTACACCACTGACCGCTCAATAACCACTTCGCGTCTTGAGAAAGGAGACTGCTACGGTGAAGAGCTTATCCTAAGCTGGGCAGCAACTGCAACAACCTCGTTTTCCGACTTGCCTAACTCAGGCAGTACTGTCAAGGCCCATAAAAATGTCGAAATCTTTGCTATCCAGGCTGCCGATTTACAGAGAGTTTTGTCTCAGCCGTCGAGCCAATATTCCAGCAATGAGGTCACCCATGCAGCAGAGACCAAGGTTATACAGAGCGTTCTGTCTCAATTGCGTGATTTATTAATCAAACCACGTTGGCTCACTCTGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

495

Amino Acids

56.25

Weight (kDa)

8.83

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cNMP_binding PF00027 363 - 455 2.1e-08 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000017)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07351 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g11800 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_1g22250 FvH4_4g14360 FvH4_6g13561 FvH4_6g13562 FvH4_6g13580 FvH4_6g13590 FvH4_6g13590 FvH4_6g13590 FvH4_6g13731 FvH4_6g13770 FvH4_6g13800 FvH4_6g13800 FvH4_6g13860 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13870 FvH4_6g13890 FvH4_6g33801 FvH4_7g13020 FvH4_7g13270 FvH4_7g13270 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g13280 FvH4_7g14580 FvH4_7g14580 FvH4_7g14580 FvH4_7g14600 FvH4_7g14600 FvH4_7g20030 FvH4_7g20510 FvH4_7g20510 FvH4_7g20510 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20670 FvH4_7g20690 FvH4_7g20690 FvH4_7g31930 FvH4_7g31930 FvH4_7g31940 FvH4_7g31940
malus_domestica MD01G1115700.v1.1 MD01G1115800.v1.1 MD01G1116600.v1.1 MD01G1116700.v1.1 MD01G1117000.v1.1 MD01G1225000.v1.1 MD02G1077900.v1.1 MD02G1078000.v1.1 MD02G1078200.v1.1 MD02G1078400.v1.1 MD02G1084300.v1.1 MD04G1004700.v1.1 MD04G1123100.v1.1 MD04G1123200.v1.1 MD04G1128000.v1.1 MD04G1128400.v1.1 MD05G1299700.v1.1 MD05G1300000.v1.1 MD07G1184000.v1.1 MD07G1292300.v1.1 MD08G1214800.v1.1
prunus_persica Prupe.1G205100_v2.0.a1 Prupe.1G205100_v2.0.a1 Prupe.1G205200_v2.0.a1 Prupe.2G222300_v2.0.a1 Prupe.2G223300_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223500_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223600_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223700_v2.0.a1 Prupe.2G223800_v2.0.a1 Prupe.2G223900_v2.0.a1 Prupe.2G224000_v2.0.a1 Prupe.5G162000_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G254400_v2.0.a1 Prupe.6G291000_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G057700_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G073200_v2.0.a1 Prupe.7G210400_v2.0.a1 Prupe.7G210600_v2.0.a1 Prupe.7G210700_v2.0.a1 Prupe.7G210800_v2.0.a1 Prupe.7G210900_v2.0.a1 Prupe.8G097600_v2.0.a1 Prupe.8G097800_v2.0.a1 Prupe.8G097800_v2.0.a1
pyrus_communis pycom01g14430 pycom01g14440 pycom01g23130 pycom01g23160 pycom01g23330 pycom02g06210 pycom02g06220 pycom02g06250 pycom02g06270 pycom02g06710 pycom03g05360 pycom03g05380 pycom04g11470 pycom04g11480 pycom04g11520 pycom04g11560 pycom04g11600 pycom04g11610 pycom04g11650 pycom04g11660 pycom04g11670 pycom05g27790 pycom07g17630 pycom08g20960 pycom126g00020 pycom126g00030
rosa_chinensis RchiOBHm_Chr1g0318251 RchiOBHm_Chr1g0318731 RchiOBHm_Chr1g0339101 RchiOBHm_Chr1g0339111 RchiOBHm_Chr1g0347151 RchiOBHm_Chr1g0347161 RchiOBHm_Chr1g0347221 RchiOBHm_Chr1g0352401 RchiOBHm_Chr1g0352441 RchiOBHm_Chr1g0352461 RchiOBHm_Chr1g0356131 RchiOBHm_Chr1g0363991 RchiOBHm_Chr1g0364791 RchiOBHm_Chr1g0364801 RchiOBHm_Chr1g0364811 RchiOBHm_Chr1g0364851 RchiOBHm_Chr1g0364951 RchiOBHm_Chr1g0370821 RchiOBHm_Chr1g0381221 RchiOBHm_Chr1g0381231 RchiOBHm_Chr1g0381261 RchiOBHm_Chr1g0381271 RchiOBHm_Chr1g0381341 RchiOBHm_Chr1g0381351 RchiOBHm_Chr1g0381391 RchiOBHm_Chr1g0381801 RchiOBHm_Chr1g0381821 RchiOBHm_Chr2g0093241 RchiOBHm_Chr2g0116391 RchiOBHm_Chr3g0466441 RchiOBHm_Chr3g0466631 RchiOBHm_Chr3g0466651 RchiOBHm_Chr3g0496921 RchiOBHm_Chr4g0400441 RchiOBHm_Chr4g0400501 RchiOBHm_Chr4g0400511 RchiOBHm_Chr4g0400691 RchiOBHm_Chr4g0400701 RchiOBHm_Chr4g0404331 RchiOBHm_Chr5g0052101 RchiOBHm_Chr5g0052111 RchiOBHm_Chr5g0052171 RchiOBHm_Chr5g0052181 RchiOBHm_Chr6g0264161 RchiOBHm_Chr6g0265551 RchiOBHm_Chr7g0213571 RchiOBHm_Chr7g0213581
rosa_laevigata RLG00000002796 RLG00000003261 RLG00000007935 RLG00000007936 RLG00000009187 RLG00000014179 RLG00000016381 RLG00000018265 RLG00000024558 RLG00000024574 RLG00000026232 RLG00000026234 RLG00000026236 RLG00000026237 RLG00000027459 RLG00000027461 RLG00000027463 RLG00000027530 RLG00000028103 RLG00000028304 RLG00000028333 RLG00000029214 RLG00000029848 RLG00000029951 RLG00000030115 RLG00000030552 RLG00000033668 RLG00000034840 RLG00000034841 RLG00000034842 RLG00000035830
rosa_multiflora Rmu_sc0000654.1_g000004 Rmu_sc0000675.1_g000025 Rmu_sc0001075.1_g000002 Rmu_sc0001726.1_g000004 Rmu_sc0001772.1_g000061 Rmu_sc0001772.1_g000065 Rmu_sc0002067.1_g000002 Rmu_sc0002183.1_g000001 Rmu_sc0002183.1_g000006 Rmu_sc0002244.1_g000003 Rmu_sc0002313.1_g000004 Rmu_sc0002319.1_g000004 Rmu_sc0002539.1_g000085 Rmu_sc0002636.1_g000004 Rmu_sc0003229.1_g000007 Rmu_sc0003313.1_g000020 Rmu_sc0003546.1_g000007 Rmu_sc0003724.1_g000015 Rmu_sc0003936.1_g000029 Rmu_sc0004191.1_g000067 Rmu_sc0004525.1_g000012 Rmu_sc0005122.1_g000009 Rmu_sc0005255.1_g000040 Rmu_sc0005338.1_g000016 Rmu_sc0005584.1_g000008 Rmu_sc0006460.1_g000013 Rmu_sc0006872.1_g000011 Rmu_sc0006872.1_g000015 Rmu_sc0006872.1_g000016 Rmu_sc0006952.1_g000013 Rmu_sc0007342.1_g000005 Rmu_sc0007342.1_g000006 Rmu_sc0008418.1_g000003 Rmu_sc0008418.1_g000006 Rmu_sc0008636.1_g000007 Rmu_sc0008636.1_g000008 Rmu_sc0009205.1_g000014 Rmu_sc0009365.1_g000014 Rmu_sc0009917.1_g000002 Rmu_sc0019289.1_g000003 Rmu_ssc0000098.1_g000011 Rmu_ssc0000098.1_g000012 Rmu_ssc0000167.1_g000018 Rmu_ssc0000167.1_g000024 Rmu_ssc0000326.1_g000015
rosa_roxburghii Rroxscaffold_166G00440780 Rroxscaffold_176G00431500 Rroxscaffold_1G00015080 Rroxscaffold_1G00027880 Rroxscaffold_1G00027890 Rroxscaffold_1G00027920 Rroxscaffold_2G00127250 Rroxscaffold_2G00148380 Rroxscaffold_3G00219450 Rroxscaffold_3G00232170 Rroxscaffold_3G00232210 Rroxscaffold_3G00242230 Rroxscaffold_3G00242240 Rroxscaffold_3G00244790 Rroxscaffold_3G00245790 Rroxscaffold_4G00278400 Rroxscaffold_4G00278430 Rroxscaffold_4G00278670 Rroxscaffold_4G00278680 Rroxscaffold_4G00278690 Rroxscaffold_4G00278700 Rroxscaffold_4G00278720 Rroxscaffold_4G00291690 Rroxscaffold_4G00292070 Rroxscaffold_4G00292090 Rroxscaffold_4G00292770 Rroxscaffold_4G00302240 Rroxscaffold_4G00302860 Rroxscaffold_4G00311320 Rroxscaffold_4G00311330 Rroxscaffold_4G00320570 Rroxscaffold_4G00322050 Rroxscaffold_4G00329480 Rroxscaffold_4G00329730 Rroxscaffold_5G00345500 Rroxscaffold_5G00345510 Rroxscaffold_5G00360830 Rroxscaffold_5G00360840 Rroxscaffold_6G00393450 Rroxscaffold_6G00404030 Rroxscaffold_6G00414220 Rroxscaffold_6G00414230 Rroxscaffold_6G00414280 Rroxscaffold_6G00414290 Rroxscaffold_6G00414350 Rroxscaffold_6G00414470 Rroxscaffold_7G00202570 Rroxscaffold_7G00203460 Rroxscaffold_7G00203470
rosa_rugosa Rorug01G0020500 Rorug01G0020600 Rorug01G0020700 Rorug01G0143700.1 Rorug01G0225700 Rorug01G0228500 Rorug01G0228600 Rorug01G0228600 Rorug01G0228700 Rorug01G0228800 Rorug01G0228800 Rorug01G0229000 Rorug01G0229300 Rorug01G0229400 Rorug01G0229600 Rorug01G0229700 Rorug01G0232200 Rorug01G0232600 Rorug01G0232600 Rorug01G0311900 Rorug01G0311900 Rorug01G0318400 Rorug01G0318500 Rorug01G0318500 Rorug01G0318500 Rorug01G0427900 Rorug01G0427900 Rorug01G0428000 Rorug01G0428200 Rorug01G0428300 Rorug01G0428400 Rorug01G0431500 Rorug01G0431600 Rorug01G0431600 Rorug02G0033800 Rorug02G0206300 Rorug03G0081900 Rorug03G0083200 Rorug03G0083200 Rorug03G0083300 Rorug04G0025100 Rorug04G0025100 Rorug04G0025200 Rorug04G0025300 Rorug04G0058600 Rorug04G0058700 Rorug04G0058800 Rorug04G0098400 Rorug04G0098500 Rorug05G0274500 Rorug05G0274600 Rorug05G0274800 Rorug06G0008500 Rorug06G0009100 Rorug06G0018000
rosa_samantha Rh1AG031700 Rh1AG036100 Rh1AG089800 Rh1AG239800 Rh1AG239900 Rh1AG242000 Rh1AG242300 Rh1AG245600 Rh1AG262600 Rh1AG319700 Rh1AG319800 Rh1AG319900 Rh1AG327200 Rh1AG451100 Rh1AG451200 Rh1AG451300 Rh1AG451600 Rh1AG451700 Rh1BG027200 Rh1BG071600 Rh1BG090700 Rh1BG211000 Rh1BG213000 Rh1BG213500 Rh1BG282800 Rh1BG288400 Rh1BG408100 Rh1BG408200 Rh1BG408400 Rh1BG408700 Rh1CG026300 Rh1CG028300 Rh1CG224100 Rh1CG226000 Rh1CG226100 Rh1CG229300 Rh1CG229400 Rh1CG245900 Rh1CG299200 Rh1CG299400 Rh1CG299500 Rh1CG303300 Rh1CG305100 Rh1CG422500 Rh1CG422600 Rh1CG422700 Rh1CG422800 Rh1CG422900 Rh1CG423100 Rh1CG423300 Rh1CG423400 Rh1CG426300 Rh1CG426600 Rh1DG239300 Rh1DG239600 Rh1DG258300 Rh1DG314200 Rh1DG314300 Rh1DG314400 Rh1DG320000 Rh1DG439200 Rh1DG439400 Rh1DG439500 Rh1DG439700 Rh1DG440000 Rh1DG443800 Rh2AG261800 Rh2BG080900 Rh2CG083300 Rh2DG078900 Rh2DG270000 Rh2DG270100 Rh3AG128400 Rh3AG130100 Rh3AG130500 Rh3AG332500 Rh3AG332600 Rh3AG332800 Rh3BG149700 Rh3BG151500 Rh3CG151400 Rh3CG354500 Rh3CG366800 Rh3DG150500 Rh3DG152200 Rh4AG101400 Rh4AG102900 Rh4AG148300 Rh4AG148600 Rh4BG098000 Rh4CG111100 Rh4CG111300 Rh4CG155100 Rh4DG094800 Rh5AG213600 Rh5AG346900 Rh5AG347000 Rh5BG357500 Rh5BG357700 Rh5BG485400 Rh5CG383100 Rh5CG383200 Rh5CG383300 Rh5CG509900 Rh5DG373000 Rh5DG373200 Rh6BG054300 Rh6BG126300 Rh6CG125100 Rh6CG185300 Rh6DG177000 Rh7AG276100 Rh7AG276200 Rh7BG230500 Rh7BG270500 Rh7BG364000 Rh7CG250100 Rh7CG295200 Rh7CG295300 Rh7DG389700
rosa_wichuraiana Rw0G001190 Rw0G010680 Rw0G013360 Rw0G014310 Rw0G014890 Rw0G020310 Rw0G021350 Rw0G022510 Rw1G003360 Rw1G004330 Rw1G006930 Rw1G008310 Rw1G021090 Rw1G021150 Rw1G021210 Rw1G023200 Rw1G023210 Rw1G028340 Rw1G028350 Rw1G028990 Rw1G032510 Rw1G039370 Rw1G039400 Rw1G039410 Rw1G039420 Rw1G039430 Rw2G006700 Rw2G020550 Rw2G020580 Rw3G012130 Rw3G012300 Rw3G012310 Rw3G028220 Rw3G029230 Rw5G021600 Rw5G032790 Rw6G011240 Rw7G027670 Rw7G032780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 130, 1185
AccII CGCG 1 cut(s) 1201
AciI CCGC 5 cut(s) 35, 130, 239, 463, 1183
AclWI GGATC 5 cut(s) 311, 324, 475, 580, 1073
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 23
AfaI GTAC 6 cut(s) 57, 197, 332, 1033, 1172, 1297
AfiI CCNNNNNNNGG 4 cut(s) 370, 1120, 1246, 1289
AgsI TTSAA 6 cut(s) 117, 125, 721, 924, 937, 1057
AjnI CCWGG 4 cut(s) 100, 1027, 1152, 1335
AjuI GAANNNNNNNTTGG 2 cut(s) 779, 811
AluBI AGCT 8 cut(s) 43, 395, 485, 567, 968, 1104, 1234, 1245
AluI AGCT 8 cut(s) 43, 395, 485, 567, 968, 1104, 1234, 1245
Alw21I GWGCWC 2 cut(s) 569, 691
Alw26I GTCTC 8 cut(s) 279, 347, 998, 1009, 1209, 1368, 1406, 1443
AlwI GGATC 5 cut(s) 311, 324, 475, 580, 1073
AlwNI CAGNNNCTG 1 cut(s) 1256
Ama87I CYCGRG 1 cut(s) 1166
AoxI GGCC 2 cut(s) 138, 1305
ApeKI GCWGC 4 cut(s) 392, 1250, 1340, 1406
ApoI RAATTY 1 cut(s) 106
AseI ATTAAT 1 cut(s) 1457
AspS9I GGNCC 2 cut(s) 771, 1306
AsuHPI GGTGA 5 cut(s) 83, 255, 1141, 1238, 1390
AvaI CYCGRG 1 cut(s) 1166
AvaII GGWCC 1 cut(s) 771
AxyI CCTNAGG 2 cut(s) 474, 1095
BaeI ACNNNNGTAYC 2 cut(s) 665, 698
BalI TGGCCA 1 cut(s) 140
BamHI GGATCC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 569
BauI CACGAG 1 cut(s) 1115
BbsI GAAGAC 2 cut(s) 897, 912
Bbv12I GWGCWC 2 cut(s) 569, 691
BbvI GCAGC 4 cut(s) 404, 1262, 1327, 1418
BccI CCATC 3 cut(s) 61, 989, 1029
BceAI ACGGC 1 cut(s) 1354
BcgI CGANNNNNNTGC 6 cut(s) 1147, 1181, 1248, 1282, 1310, 1344
BciT130I CCWGG 4 cut(s) 102, 1029, 1154, 1337
BciVI GTATCC 1 cut(s) 699
BcoDI GTCTC 8 cut(s) 279, 347, 998, 1009, 1209, 1368, 1406, 1443
BfaI CTAG 2 cut(s) 294, 965
BfmI CTRYAG 1 cut(s) 643
BfuI GTATCC 1 cut(s) 699
BglII AGATCT 2 cut(s) 418, 898
BisI GCNGC 4 cut(s) 393, 1251, 1341, 1407
BlsI GCNGC 4 cut(s) 394, 1252, 1342, 1408
BmcAI AGTACT 1 cut(s) 1297
Bme1390I CCNGG 4 cut(s) 102, 1029, 1154, 1337
Bme18I GGWCC 1 cut(s) 771
BmeT110I CYCGRG 1 cut(s) 1166
BmgT120I GGNCC 2 cut(s) 771, 1306
BmiI GGNNCC 4 cut(s) 318, 773, 801, 1125
BmrFI CCNGG 4 cut(s) 102, 1029, 1154, 1337
BmsI GCATC 1 cut(s) 501
BpiI GAAGAC 2 cut(s) 897, 912
BpmI CTGGAG 1 cut(s) 929
Bpu10I CCTNAGC 1 cut(s) 1241
BpuEI CTTGAG 1 cut(s) 1226
BsaI GGTCTC 1 cut(s) 1406
BsaJI CCNNGG 4 cut(s) 1027, 1152, 1153, 1416
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 6 cut(s) 155, 185, 344, 374, 902, 932
Bsc4I CCNNNNNNNGG 4 cut(s) 370, 1120, 1246, 1289
Bse1I ACTGG 3 cut(s) 318, 744, 1082
Bse21I CCTNAGG 2 cut(s) 474, 1095
Bse3DI GCAATG 2 cut(s) 1158, 1396
BseBI CCWGG 4 cut(s) 102, 1029, 1154, 1337
BseDI CCNNGG 4 cut(s) 1027, 1152, 1153, 1416
BseGI GGATG 2 cut(s) 274, 735
BseLI CCNNNNNNNGG 4 cut(s) 370, 1120, 1246, 1289
BseMI GCAATG 2 cut(s) 1158, 1396
BseMII CTCAG 2 cut(s) 1302, 1379
BseNI ACTGG 3 cut(s) 318, 744, 1082
BseRI GAGGAG 2 cut(s) 365, 577
BseXI GCAGC 4 cut(s) 404, 1262, 1327, 1418
BseYI CCCAGC 3 cut(s) 235, 485, 1245
Bsh1236I CGCG 1 cut(s) 1201
BshFI GGCC 2 cut(s) 140, 1307
BsiHKAI GWGCWC 2 cut(s) 569, 691
BsiHKCI CYCGRG 1 cut(s) 1166
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 757
BslI CCNNNNNNNGG 4 cut(s) 370, 1120, 1246, 1289
BsmAI GTCTC 8 cut(s) 279, 347, 998, 1009, 1209, 1368, 1406, 1443
BsmFI GGGAC 1 cut(s) 757
BsnI GGCC 2 cut(s) 140, 1307
Bso31I GGTCTC 1 cut(s) 1406
BsoBI CYCGRG 1 cut(s) 1166
Bsp1286I GDGCHC 2 cut(s) 569, 691
Bsp1407I TGTACA 2 cut(s) 195, 330
Bsp143I GATC 7 cut(s) 316, 418, 467, 572, 898, 1078, 1086
BspACI CCGC 5 cut(s) 35, 130, 239, 463, 1183
BspANI GGCC 2 cut(s) 140, 1307
BspCNI CTCAG 2 cut(s) 1301, 1378
BspFNI CGCG 1 cut(s) 1201
BspLI GGNNCC 4 cut(s) 318, 773, 801, 1125
BspPI GGATC 5 cut(s) 311, 324, 475, 580, 1073
BspQI GCTCTTC 2 cut(s) 120, 1224
BspTNI GGTCTC 1 cut(s) 1406
BsrBI CCGCTC 2 cut(s) 130, 1185
BsrDI GCAATG 2 cut(s) 1158, 1396
BsrGI TGTACA 2 cut(s) 195, 330
BsrI ACTGG 3 cut(s) 318, 744, 1082
BssECI CCNNGG 4 cut(s) 1027, 1152, 1153, 1416
BssMI GATC 7 cut(s) 316, 418, 467, 572, 898, 1078, 1086
BssSI CACGAG 1 cut(s) 1115
BssT1I CCWWGG 1 cut(s) 1416
Bst2BI CACGAG 1 cut(s) 1115
Bst2UI CCWGG 4 cut(s) 102, 1029, 1154, 1337
Bst4CI ACNGT 3 cut(s) 223, 1226, 1300
Bst6I CTCTTC 3 cut(s) 120, 1001, 1224
BstAPI GCANNNNNTGC 1 cut(s) 1256
BstAUI TGTACA 2 cut(s) 195, 330
BstC8I GCNNGC 4 cut(s) 35, 94, 98, 757
BstDEI CTNAG 8 cut(s) 357, 447, 474, 541, 1095, 1241, 1288, 1365
BstEII GGTNACC 1 cut(s) 1396
BstENI CCTNNNNNAGG 1 cut(s) 1287
BstF5I GGATG 2 cut(s) 274, 735
BstFNI CGCG 1 cut(s) 1201
BstKTI GATC 7 cut(s) 319, 421, 470, 575, 901, 1081, 1089
BstMAI GTCTC 8 cut(s) 279, 347, 998, 1009, 1209, 1368, 1406, 1443
BstMBI GATC 7 cut(s) 316, 418, 467, 572, 898, 1078, 1086
BstMWI GCNNNNNNNGC 3 cut(s) 11, 1256, 1337
BstNI CCWGG 4 cut(s) 102, 1029, 1154, 1337
BstNSI RCATGY 2 cut(s) 100, 187
BstPI GGTNACC 1 cut(s) 1396
BstSCI CCNGG 4 cut(s) 100, 1027, 1152, 1335
BstSFI CTRYAG 1 cut(s) 643
BstUI CGCG 1 cut(s) 1201
BstV1I GCAGC 4 cut(s) 404, 1262, 1327, 1418
BstV2I GAAGAC 2 cut(s) 897, 912
BstX2I RGATCY 5 cut(s) 316, 418, 467, 572, 898
BstYI RGATCY 5 cut(s) 316, 418, 467, 572, 898
Bsu36I CCTNAGG 2 cut(s) 474, 1095
BsuI GTATCC 1 cut(s) 699
BsuRI GGCC 2 cut(s) 140, 1307
BtgZI GCGATG 2 cut(s) 478, 1007
BtsCI GGATG 2 cut(s) 274, 735
BtsIMutI CAGTG 3 cut(s) 228, 1089, 1176
Cac8I GCNNGC 4 cut(s) 35, 94, 98, 757
CaiI CAGNNNCTG 1 cut(s) 1256
Cfr13I GGNCC 2 cut(s) 771, 1306
CseI GACGC 1 cut(s) 1190
Csp6I GTAC 6 cut(s) 56, 196, 331, 1032, 1171, 1296
CviAII CATG 7 cut(s) 89, 97, 184, 367, 817, 1039, 1403
CviQI GTAC 6 cut(s) 56, 196, 331, 1032, 1171, 1296
DdeI CTNAG 8 cut(s) 357, 447, 474, 541, 1095, 1241, 1288, 1365
DpnI GATC 7 cut(s) 318, 420, 469, 574, 900, 1080, 1088
DpnII GATC 7 cut(s) 316, 418, 467, 572, 898, 1078, 1086
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 3 cut(s) 120, 1001, 1224
EarI CTCTTC 3 cut(s) 120, 1001, 1224
Ecl136II GAGCTC 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 1416
Eco24I GRGCYC 1 cut(s) 569
Eco31I GGTCTC 1 cut(s) 1406
Eco47I GGWCC 1 cut(s) 771
Eco53kI GAGCTC 1 cut(s) 567
Eco57I CTGAAG 1 cut(s) 23
Eco81I CCTNAGG 2 cut(s) 474, 1095
Eco88I CYCGRG 1 cut(s) 1166
Eco91I GGTNACC 1 cut(s) 1396
EcoICRI GAGCTC 1 cut(s) 567
EcoNI CCTNNNNNAGG 1 cut(s) 1287
EcoO109I RGGNCCY 1 cut(s) 771
EcoO65I GGTNACC 1 cut(s) 1396
EcoRII CCWGG 4 cut(s) 100, 1027, 1152, 1335
EcoT14I CCWWGG 1 cut(s) 1416
EcoT38I GRGCYC 1 cut(s) 569
ErhI CCWWGG 1 cut(s) 1416
FaeI CATG 7 cut(s) 92, 100, 187, 370, 820, 1042, 1406
FaqI GGGAC 1 cut(s) 757
FatI CATG 7 cut(s) 88, 96, 183, 366, 816, 1038, 1402
FauI CCCGC 2 cut(s) 42, 456
Fnu4HI GCNGC 4 cut(s) 393, 1251, 1341, 1407
FokI GGATG 2 cut(s) 281, 722
FriOI GRGCYC 1 cut(s) 569
Fsp4HI GCNGC 4 cut(s) 393, 1251, 1341, 1407
FspBI CTAG 2 cut(s) 294, 965
GluI GCNGC 4 cut(s) 393, 1251, 1341, 1407
GsaI CCCAGC 3 cut(s) 239, 489, 1249
GsuI CTGGAG 1 cut(s) 929
HaeIII GGCC 2 cut(s) 140, 1307
HapII CCGG 1 cut(s) 266
HgaI GACGC 1 cut(s) 1190
Hin1II CATG 7 cut(s) 92, 100, 187, 370, 820, 1042, 1406
HinfI GANTC 7 cut(s) 50, 158, 272, 408, 658, 812, 1017
HpaII CCGG 1 cut(s) 266
HphI GGTGA 5 cut(s) 83, 255, 1141, 1238, 1390
Hpy166II GTNNAC 1 cut(s) 1173
Hpy188I TCNGA 6 cut(s) 163, 555, 766, 826, 986, 1276
Hpy188III TCNNGA 4 cut(s) 570, 908, 1130, 1205
Hpy8I GTNNAC 1 cut(s) 1173
Hpy99I CGWCG 1 cut(s) 1375
HpyAV CCTTC 3 cut(s) 560, 943, 1051
HpyCH4III ACNGT 3 cut(s) 223, 1226, 1300
HpyCH4IV ACGT 2 cut(s) 504, 1468
HpyCH4V TGCA 7 cut(s) 14, 92, 654, 1038, 1163, 1259, 1406
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 1256, 1337
HpyF3I CTNAG 8 cut(s) 357, 447, 474, 541, 1095, 1241, 1288, 1365
HpySE526I ACGT 2 cut(s) 504, 1468
Hsp92II CATG 7 cut(s) 92, 100, 187, 370, 820, 1042, 1406
Kzo9I GATC 7 cut(s) 316, 418, 467, 572, 898, 1078, 1086
LguI GCTCTTC 2 cut(s) 120, 1224
LmnI GCTCC 4 cut(s) 489, 564, 694, 1123
Lsp1109I GCAGC 4 cut(s) 404, 1262, 1327, 1418
LweI GCATC 1 cut(s) 501
MaeI CTAG 2 cut(s) 294, 965
MaeII ACGT 2 cut(s) 504, 1468
MaeIII GTNAC 4 cut(s) 243, 309, 412, 1396
MalI GATC 7 cut(s) 318, 420, 469, 574, 900, 1080, 1088
MbiI CCGCTC 2 cut(s) 130, 1185
MboI GATC 7 cut(s) 316, 418, 467, 572, 898, 1078, 1086
MfeI CAATTG 1 cut(s) 1442
MflI RGATCY 5 cut(s) 316, 418, 467, 572, 898
MhlI GDGCHC 2 cut(s) 569, 691
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 6 cut(s) 28, 106, 278, 924, 971, 1442
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 2 cut(s) 281, 1011
MmeI TCCRAC 2 cut(s) 351, 1299
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 8 cut(s) 45, 147, 204, 453, 663, 974, 1010, 1457
MslI CAYNNNNRTG 2 cut(s) 305, 1314
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 4 cut(s) 102, 1029, 1154, 1337
MunI CAATTG 1 cut(s) 1442
MvaI CCWGG 4 cut(s) 102, 1029, 1154, 1337
MvnI CGCG 1 cut(s) 1201
MwoI GCNNNNNNNGC 3 cut(s) 11, 1256, 1337
NdeII GATC 7 cut(s) 316, 418, 467, 572, 898, 1078, 1086
NlaIII CATG 7 cut(s) 92, 100, 187, 370, 820, 1042, 1406
NlaIV GGNNCC 4 cut(s) 318, 773, 801, 1125
NmuCI GTSAC 2 cut(s) 412, 1396
NspI RCATGY 2 cut(s) 100, 187
PaeI GCATGC 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 1166
PasI CCCWGGG 1 cut(s) 1153
PciSI GCTCTTC 2 cut(s) 120, 1224
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PfeI GAWTC 5 cut(s) 50, 158, 408, 658, 812
PflFI GACNNNGTC 2 cut(s) 506, 990
PkrI GCNGC 4 cut(s) 394, 1252, 1342, 1408
PleI GAGTC 2 cut(s) 280, 1011
PpsI GAGTC 2 cut(s) 280, 1011
PpuMI RGGWCCY 1 cut(s) 771
PshBI ATTAAT 1 cut(s) 1457
Psp124BI GAGCTC 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 771
Psp6I CCWGG 4 cut(s) 100, 1027, 1152, 1335
PspEI GGTNACC 1 cut(s) 1396
PspFI CCCAGC 3 cut(s) 235, 485, 1245
PspGI CCWGG 4 cut(s) 100, 1027, 1152, 1335
PspN4I GGNNCC 4 cut(s) 318, 773, 801, 1125
PspPI GGNCC 2 cut(s) 771, 1306
PspPPI RGGWCCY 1 cut(s) 771
PspXI VCTCGAGB 1 cut(s) 1166
PstNI CAGNNNCTG 1 cut(s) 1256
PsuI RGATCY 5 cut(s) 316, 418, 467, 572, 898
PsyI GACNNNGTC 2 cut(s) 506, 990
RsaI GTAC 6 cut(s) 57, 197, 332, 1033, 1172, 1297
RsaNI GTAC 6 cut(s) 56, 196, 331, 1032, 1171, 1296
RseI CAYNNNNRTG 2 cut(s) 305, 1314
SacI GAGCTC 1 cut(s) 569
SapI GCTCTTC 2 cut(s) 120, 1224
SaqAI TTAA 8 cut(s) 45, 147, 204, 453, 663, 974, 1010, 1457
SatI GCNGC 4 cut(s) 393, 1251, 1341, 1407
Sau3AI GATC 7 cut(s) 316, 418, 467, 572, 898, 1078, 1086
Sau96I GGNCC 2 cut(s) 771, 1306
ScaI AGTACT 1 cut(s) 1297
SchI GAGTC 2 cut(s) 281, 1011
ScrFI CCNGG 4 cut(s) 102, 1029, 1154, 1337
SduI GDGCHC 2 cut(s) 569, 691
SfaNI GCATC 1 cut(s) 501
SfcI CTRYAG 1 cut(s) 643
Sfr274I CTCGAG 1 cut(s) 1166
SinI GGWCC 1 cut(s) 771
SlaI CTCGAG 1 cut(s) 1166
SmiMI CAYNNNNRTG 2 cut(s) 305, 1314
SmlI CTYRAG 2 cut(s) 1166, 1205
SmoI CTYRAG 2 cut(s) 1166, 1205
SphI GCATGC 1 cut(s) 100
Sse9I AATT 6 cut(s) 28, 106, 278, 924, 971, 1442
SsiI CCGC 5 cut(s) 35, 130, 239, 463, 1183
SspI AATATT 2 cut(s) 724, 1382
SspMI CTAG 2 cut(s) 294, 965
SstI GAGCTC 1 cut(s) 569
StyD4I CCNGG 4 cut(s) 100, 1027, 1152, 1335
StyI CCWWGG 1 cut(s) 1416
TaaI ACNGT 3 cut(s) 223, 1226, 1300
TaiI ACGT 2 cut(s) 507, 1471
TaqI TCGA 6 cut(s) 110, 180, 683, 1167, 1320, 1373
TasI AATT 6 cut(s) 28, 106, 278, 924, 971, 1442
TatI WGTACW 4 cut(s) 195, 330, 1170, 1295
TfiI GAWTC 5 cut(s) 50, 158, 408, 658, 812
Tru1I TTAA 8 cut(s) 45, 147, 204, 453, 663, 974, 1010, 1457
Tru9I TTAA 8 cut(s) 45, 147, 204, 453, 663, 974, 1010, 1457
TscAI CASTG 3 cut(s) 228, 1089, 1183
TseFI GTSAC 2 cut(s) 412, 1396
TseI GCWGC 4 cut(s) 392, 1250, 1340, 1406
Tsp45I GTSAC 2 cut(s) 412, 1396
TspDTI ATGAA 6 cut(s) 274, 289, 449, 602, 1055, 1135
TspRI CASTG 3 cut(s) 228, 1089, 1183
Tth111I GACNNNGTC 2 cut(s) 506, 990
VpaK11BI GGWCC 1 cut(s) 771
VspI ATTAAT 1 cut(s) 1457
XagI CCTNNNNNAGG 1 cut(s) 1287
XapI RAATTY 1 cut(s) 106
XceI RCATGY 2 cut(s) 100, 187
XhoI CTCGAG 1 cut(s) 1166
XspI CTAG 2 cut(s) 294, 965
ZrmI AGTACT 1 cut(s) 1297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.