Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Reverse (-)

234597 .. 237582

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGACAGAGTCTATTGATTTAAATCGATCAGAGTCCGAGTCTGATAACAACACCGACGACGTTACTCCTATTTTTGCAATTGATGACTCTTCAAAAGGAAGAGTGAGTGGTCCTACTAGAAGATCAACTAAAGGAGGATGGACAGCCGAAGAGGACCAAATTTTGACGAATGTTGTGAAGAAGTACCAAGGGAGGAACTGGAAAAGGATTGCTGAATGCCTTCCTGGGTCGGAAGAGAATAGGAGGAATGATGTCCAATGTCAGCACCGTTGGCTTAAGGTTCTTGATCCAAGCCTCCAAAAAGGAGCTTGGAAAAAAGAGGAAGATGAACTCTTAAGTGAGTTGGTTAAAGATTATATGGAGAATGATAGGCCTCCATGGTCAAAAATTTCAAAGGAACTCCCTGGTCGCATCGGCAAGCAATGCCGCGAAAGGTGGCATAATCATTTGAATCCGACTATTATAAAATCTCCATGGACTAGAGAAGAGGAATTAATTCTCGTTCAAGCACAAAGAGGAAACGGCAACAAATGGGCAGAGATTGCCAAGCTATTGCCTGGAAGGACGGAGAATAATATTAAGAACCATTGGAATTGTTCAGTTAAGAAAAGGCTAGAGCAGTTTCCTAGTAACCTCTTCTCTGGTGTGGTCTATGGTTCTAAACCTAGTTCTGGTTTTGAATACAACTTTTTCAATCAAAGAAACACGATGGTCGAGAGTTGCATAACATCACAAATCAAGGAAGCTGCAAAGAGTCCTCAAAGGGATTTCTTGGATTTAACTTTAGGACTGAATTGGAGGAGCATTTCTTCATCCACAAGCTCTCTTAGAGGAGAAGAATCAGTCTCATCATCAGTAGACTCAGTTTGTGCAAGACTCAATGCGTGTTTAGAAACTCCACAGAACAGCAACAACGATACTGTGTGCGTAAAGGAAGTGAGGGAGATGAAAGAGAGACTTAGAATGGCTGCGAGGACTTTCGACACACCCTCCATTATCTCCAAAACAAGCTCACCAGCTTCAGGTTTGAAACGGCTCAGACAAAAATACGATACACCGTTTCCAACAGATGCTCGAAGTCACATGTCAAGTGAGGAAGATCACTCAGTTTCAGCTTCTCCTTCATCCAAATACAGATTTGTGAAACGCAACACCTGCTCTGGCTCAAAACCCTTGGAGAGGCGTTTAGATTTTGACTTTCTATTGTGGGACGAACATGGTCGAAGAAACGGGATTGTCAATTTCTCTGTTAGGATTCTGCCCCAAAAATCTGATCTTAAATCCGGTCTTGTGCGTCCGTTTTGGTTACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

437

Amino Acids

50.03

Weight (kDa)

9.22

Isoelectric Point (pI)

60.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	44 - 95	9.2e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	47 - 112	4.1e-18	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	101 - 150	1.7e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	104 - 164	1.6e-16	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	156 - 198	2.2e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	159 - 204	3.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AarI	CACCTGC	1 cut(s)	1163
Acc36I	ACCTGC	1 cut(s)	1163
AccI	GTMKAC	1 cut(s)	858
AccII	CGCG	1 cut(s)	429
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	159, 387
AcuI	CTGAAG	1 cut(s)	1005
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	3 cut(s)	671, 1022, 1179
AflII	CTTAAG	2 cut(s)	275, 334
AflIII	ACRYGT	1 cut(s)	1083
AgsI	TTSAA	7 cut(s)	93, 393, 451, 506, 680, 694, 1030
AjnI	CCWGG	3 cut(s)	223, 403, 556
AluBI	AGCT	7 cut(s)	308, 550, 746, 822, 1011, 1019, 1115
AluI	AGCT	7 cut(s)	308, 550, 746, 822, 1011, 1019, 1115
Alw26I	GTCTC	2 cut(s)	850, 949
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	746, 968
ApoI	RAATTY	2 cut(s)	159, 387
AseI	ATTAAT	1 cut(s)	494
Asp700I	GAANNNNTTC	2 cut(s)	219, 495
AspS9I	GGNCC	2 cut(s)	110, 154
AsuHPI	GGTGA	1 cut(s)	1005
AvaII	GGWCC	2 cut(s)	110, 154
BbvI	GCAGC	2 cut(s)	733, 955
BccI	CCATC	2 cut(s)	132, 703
BceAI	ACGGC	2 cut(s)	538, 1049
BciT130I	CCWGG	3 cut(s)	225, 405, 558
BcoDI	GTCTC	2 cut(s)	850, 949
BfaI	CTAG	5 cut(s)	117, 480, 614, 627, 666
BfrI	CTTAAG	2 cut(s)	275, 334
BfuAI	ACCTGC	1 cut(s)	1163
BisI	GCNGC	3 cut(s)	427, 747, 969
BlsI	GCNGC	3 cut(s)	428, 748, 970
Bme1390I	CCNGG	3 cut(s)	225, 405, 558
Bme18I	GGWCC	2 cut(s)	110, 154
BmgT120I	GGNCC	2 cut(s)	110, 154
BmrFI	CCNGG	3 cut(s)	225, 405, 558
BmsI	GCATC	2 cut(s)	420, 1060
Bsa29I	ATCGAT	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	21
BsaJI	CCNNGG	6 cut(s)	187, 224, 377, 403, 473, 1173
BsaWI	WCCGGW	1 cut(s)	1283
BsaXI	ACNNNNNCTCC	2 cut(s)	974, 1004
Bsc4I	CCNNNNNNNGG	3 cut(s)	671, 1022, 1179
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	428
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	3 cut(s)	225, 405, 558
BseCI	ATCGAT	1 cut(s)	25
BseDI	CCNNGG	6 cut(s)	187, 224, 377, 403, 473, 1173
BseGI	GGATG	3 cut(s)	143, 812, 1124
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	3 cut(s)	671, 1022, 1179
BseMI	GCAATG	1 cut(s)	428
BseMII	CTCAG	3 cut(s)	876, 1051, 1119
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	814, 846
BseXI	GCAGC	2 cut(s)	733, 955
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	373
BshVI	ATCGAT	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	1284
BslFI	GGGAC	1 cut(s)	1223
BslI	CCNNNNNNNGG	3 cut(s)	671, 1022, 1179
BsmAI	GTCTC	2 cut(s)	850, 949
BsmFI	GGGAC	1 cut(s)	1223
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	373
Bsp143I	GATC	5 cut(s)	26, 122, 286, 1099, 1273
Bsp19I	CCATGG	2 cut(s)	377, 473
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	3 cut(s)	875, 1050, 1118
BspDI	ATCGAT	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	429
BspMI	ACCTGC	1 cut(s)	1163
BspPI	GGATC	1 cut(s)	281
BspTI	CTTAAG	2 cut(s)	275, 334
BsrDI	GCAATG	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	6 cut(s)	187, 224, 377, 403, 473, 1173
BssMI	GATC	5 cut(s)	26, 122, 286, 1099, 1273
BssT1I	CCWWGG	4 cut(s)	187, 377, 473, 1173
Bst2UI	CCWGG	3 cut(s)	225, 405, 558
Bst4CI	ACNGT	3 cut(s)	269, 922, 1059
Bst6I	CTCTTC	6 cut(s)	94, 94, 144, 228, 480, 641
BstAFI	CTTAAG	2 cut(s)	275, 334
BstAPI	GCANNNNNTGC	3 cut(s)	423, 542, 1155
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	5 cut(s)	827, 862, 959, 1037, 1105
BstDSI	CCRYGG	2 cut(s)	377, 473
BstENI	CCTNNNNNAGG	1 cut(s)	1177
BstF5I	GGATG	3 cut(s)	143, 812, 1124
BstFNI	CGCG	1 cut(s)	429
BstKTI	GATC	5 cut(s)	29, 125, 289, 1102, 1276
BstMAI	GTCTC	2 cut(s)	850, 949
BstMBI	GATC	5 cut(s)	26, 122, 286, 1099, 1273
BstMWI	GCNNNNNNNGC	4 cut(s)	271, 423, 542, 1155
BstNI	CCWGG	3 cut(s)	225, 405, 558
BstNSI	RCATGY	1 cut(s)	1087
BstSCI	CCNGG	3 cut(s)	223, 403, 556
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	733, 955
Bsu15I	ATCGAT	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	373
BsuTUI	ATCGAT	1 cut(s)	25
BtgI	CCRYGG	2 cut(s)	377, 473
BtsCI	GGATG	3 cut(s)	143, 812, 1124
BveI	ACCTGC	1 cut(s)	1163
Cac8I	GCNNGC	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	110, 154
ClaI	ATCGAT	1 cut(s)	25
CseI	GACGC	1 cut(s)	1283
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	4 cut(s)	378, 474, 1084, 1217
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	5 cut(s)	827, 862, 959, 1037, 1105
DpnI	GATC	5 cut(s)	28, 124, 288, 1101, 1275
DpnII	GATC	5 cut(s)	26, 122, 286, 1099, 1273
DraI	TTTAAA	1 cut(s)	21
Eam1104I	CTCTTC	6 cut(s)	94, 94, 144, 228, 480, 641
EarI	CTCTTC	6 cut(s)	94, 94, 144, 228, 480, 641
Eco130I	CCWWGG	4 cut(s)	187, 377, 473, 1173
Eco147I	AGGCCT	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	110, 154
Eco57I	CTGAAG	1 cut(s)	1005
EcoNI	CCTNNNNNAGG	1 cut(s)	1177
EcoRII	CCWGG	3 cut(s)	223, 403, 556
EcoT14I	CCWWGG	4 cut(s)	187, 377, 473, 1173
ErhI	CCWWGG	4 cut(s)	187, 377, 473, 1173
FaeI	CATG	4 cut(s)	381, 477, 1087, 1220
FalI	AAGNNNNNCTT	2 cut(s)	942, 974
FaqI	GGGAC	1 cut(s)	1223
FatI	CATG	4 cut(s)	377, 473, 1083, 1216
FblI	GTMKAC	1 cut(s)	858
Fnu4HI	GCNGC	3 cut(s)	427, 747, 969
FokI	GGATG	3 cut(s)	150, 799, 1111
Fsp4HI	GCNGC	3 cut(s)	427, 747, 969
FspBI	CTAG	5 cut(s)	117, 480, 614, 627, 666
GluI	GCNGC	3 cut(s)	427, 747, 969
HaeIII	GGCC	1 cut(s)	373
HapII	CCGG	1 cut(s)	1284
HgaI	GACGC	1 cut(s)	1283
Hin1II	CATG	4 cut(s)	381, 477, 1087, 1220
HpaII	CCGG	1 cut(s)	1284
HphI	GGTGA	1 cut(s)	1005
Hpy166II	GTNNAC	1 cut(s)	859
Hpy188I	TCNGA	7 cut(s)	31, 37, 43, 232, 456, 1040, 1273
Hpy188III	TCNNGA	2 cut(s)	284, 715
Hpy8I	GTNNAC	1 cut(s)	859
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	3 cut(s)	230, 555, 1131
HpyCH4III	ACNGT	3 cut(s)	269, 922, 1059
HpyCH4IV	ACGT	2 cut(s)	60, 1309
HpyCH4V	TGCA	4 cut(s)	77, 723, 749, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	271, 423, 542, 1155
HpyF3I	CTNAG	5 cut(s)	827, 862, 959, 1037, 1105
HpySE526I	ACGT	2 cut(s)	60, 1309
Hsp92II	CATG	4 cut(s)	381, 477, 1087, 1220
Kzo9I	GATC	5 cut(s)	26, 122, 286, 1099, 1273
LmnI	GCTCC	2 cut(s)	305, 801
Lsp1109I	GCAGC	2 cut(s)	733, 955
LweI	GCATC	2 cut(s)	420, 1060
MaeI	CTAG	5 cut(s)	117, 480, 614, 627, 666
MaeII	ACGT	2 cut(s)	60, 1309
MaeIII	GTNAC	4 cut(s)	61, 629, 1079, 1305
MalI	GATC	5 cut(s)	28, 124, 288, 1101, 1275
MboI	GATC	5 cut(s)	26, 122, 286, 1099, 1273
MfeI	CAATTG	1 cut(s)	78
MluCI	AATT	8 cut(s)	78, 159, 387, 491, 495, 592, 793, 1240
MlyI	GAGTC	7 cut(s)	17, 41, 47, 80, 763, 854, 870
MmeI	TCCRAC	3 cut(s)	210, 479, 1088
MroXI	GAANNNNTTC	2 cut(s)	219, 495
MseI	TTAA	9 cut(s)	20, 276, 335, 348, 494, 579, 603, 779, 1278
MspCI	CTTAAG	2 cut(s)	275, 334
MspI	CCGG	1 cut(s)	1284
MspR9I	CCNGG	3 cut(s)	225, 405, 558
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	3 cut(s)	225, 405, 558
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	271, 423, 542, 1155
NcoI	CCATGG	2 cut(s)	377, 473
NdeII	GATC	5 cut(s)	26, 122, 286, 1099, 1273
NlaIII	CATG	4 cut(s)	381, 477, 1087, 1220
NmuCI	GTSAC	1 cut(s)	1079
NspI	RCATGY	1 cut(s)	1087
PaqCI	CACCTGC	1 cut(s)	1163
PceI	AGGCCT	1 cut(s)	373
PciI	ACATGT	1 cut(s)	1083
PctI	GAATGC	1 cut(s)	221
PdmI	GAANNNNTTC	2 cut(s)	219, 495
PfeI	GAWTC	3 cut(s)	451, 839, 1255
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	428, 748, 970
PleI	GAGTC	7 cut(s)	16, 40, 46, 80, 762, 854, 870
PpsI	GAGTC	7 cut(s)	16, 40, 46, 80, 762, 854, 870
PscI	ACATGT	1 cut(s)	1083
PshBI	ATTAAT	1 cut(s)	494
PsiI	TTATAA	1 cut(s)	464
Psp6I	CCWGG	3 cut(s)	223, 403, 556
PspGI	CCWGG	3 cut(s)	223, 403, 556
PspPI	GGNCC	2 cut(s)	110, 154
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	9 cut(s)	20, 276, 335, 348, 494, 579, 603, 779, 1278
SatI	GCNGC	3 cut(s)	427, 747, 969
Sau3AI	GATC	5 cut(s)	26, 122, 286, 1099, 1273
Sau96I	GGNCC	2 cut(s)	110, 154
SchI	GAGTC	7 cut(s)	17, 41, 47, 80, 763, 854, 870
ScrFI	CCNGG	3 cut(s)	225, 405, 558
SfaNI	GCATC	2 cut(s)	420, 1060
SinI	GGWCC	2 cut(s)	110, 154
SmiI	ATTTAAAT	1 cut(s)	21
SmlI	CTYRAG	2 cut(s)	275, 334
SmoI	CTYRAG	2 cut(s)	275, 334
Sse9I	AATT	8 cut(s)	78, 159, 387, 491, 495, 592, 793, 1240
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	427
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	5 cut(s)	117, 480, 614, 627, 666
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	3 cut(s)	223, 403, 556
StyI	CCWWGG	4 cut(s)	187, 377, 473, 1173
SwaI	ATTTAAAT	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	269, 922, 1059
TaiI	ACGT	2 cut(s)	63, 1312
TaqI	TCGA	5 cut(s)	25, 714, 981, 1075, 1222
TasI	AATT	8 cut(s)	78, 159, 387, 491, 495, 592, 793, 1240
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	3 cut(s)	451, 839, 1255
Tru1I	TTAA	9 cut(s)	20, 276, 335, 348, 494, 579, 603, 779, 1278
Tru9I	TTAA	9 cut(s)	20, 276, 335, 348, 494, 579, 603, 779, 1278
TseFI	GTSAC	1 cut(s)	1079
TseI	GCWGC	2 cut(s)	746, 968
Tsp45I	GTSAC	1 cut(s)	1079
TspDTI	ATGAA	4 cut(s)	342, 801, 962, 1113
TspGWI	ACGGA	2 cut(s)	581, 1287
Tth111I	GACNNNGTC	1 cut(s)	7
Vha464I	CTTAAG	2 cut(s)	275, 334
VpaK11BI	GGWCC	2 cut(s)	110, 154
VspI	ATTAAT	1 cut(s)	494
XagI	CCTNNNNNAGG	1 cut(s)	1177
XapI	RAATTY	2 cut(s)	159, 387
XceI	RCATGY	1 cut(s)	1087
XmiI	GTMKAC	1 cut(s)	858
XmnI	GAANNNNTTC	2 cut(s)	219, 495
XspI	CTAG	5 cut(s)	117, 480, 614, 627, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.