Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005122.1

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Forward (+)

59964 .. 62965

Gene Structure 3002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005122.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

atggtgcaagtcaaagaatgtgatcctaacatggaaaagggggttttgctttctttgagtcctccggtatcggatagcagtggagataacacagctctcaagccagcctctgctcaactgttcgagaatgacaggccctacgagacgatcaacaaagggaggctggacagaggaagaggtaagttcaggatgttgtggcacaaccatttaaatccagatataaaaagaactgcatggacaaatgaagaagaaaagattctcattgagtcgcataaagcctatgggaacaaatgggctgaaatagcaaagcttctgcctggaaggacagaaaattcaataaagaaccactggaactgctcagttaagaaaaaattagagctacgctcattccatatatctaatatggaaagtcataaaataaaagcaggagtcagaaagacagaggcggtaaaacaaagtcttgatcggatagccaacttcgataaaaatgtggaaacttgttcaattaatcttgatctggttcttggaactcctaaaggaagggagatccagataaaatctttggacaaaggaaatcgcagttggcttacaaaaggagctggtgcagataatatgatcaaatcaccacctagtaacctttattacgatagagctgcagctgcatatggtctaaatgttgaacaacggaaagaaatttatcataactatggcaggttgagggactcgcattatttatctgctaaacaatcaatcaaagcttgcactactccttcctgtgatctttggggttttccctattttcatggaaagaatcataaacccaatcaccctatgagtttgttgaataattgctcagattcttttgactacaatagaggagctggaaattttctcaagaaaccagatcgtcctattacagttgagagattacatgaatcttgtaaagtatcacaagcttatgaggaaactaaagatgctggtggagctactgagcattcagaggcttcaaaccctggttgcttgtgctataggccactccaacaagaggatttggactattttttaaaaaatggtgaattcccaagcacagatagttacatccagacagcatttagttcagtttccttatgcactccaccaagccaagacagaggaatatctgttgattgtaatgatccagattccacattgagaagtgcagcaaggacttttaagagttcgccatctatcctaagaaaacgaagacatccaatttccagacaaagtctcaactcagagcatcactatgtcatctcagaagaaattagcaataactccagaaacagcctcaacattctaagtccatgtggtgagacaaaattccattgcatggctcgatcaaatgtcaaaaaacttttcctctctcctcaaaagtctcagaagctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

475

Amino Acids

53.68

Weight (kDa)

9.17

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	702
AccB7I	CCANNNNNTGG	1 cut(s)	1369
AciI	CCGC	1 cut(s)	446
AclWI	GGATC	3 cut(s)	17, 541, 1169
AcsI	RAATTY	5 cut(s)	331, 693, 886, 1076, 1358
AfiI	CCNNNNNNNGG	2 cut(s)	1045, 1369
AgsI	TTSAA	5 cut(s)	336, 504, 680, 844, 1008
AjnI	CCWGG	2 cut(s)	316, 1012
AjuI	GAANNNNNNNTTGG	2 cut(s)	565, 597
Alw26I	GTCTC	4 cut(s)	137, 1271, 1346, 1419
AlwI	GGATC	3 cut(s)	17, 541, 1169
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	134, 1031
ApeKI	GCWGC	4 cut(s)	653, 656, 659, 1199
ApoI	RAATTY	5 cut(s)	331, 693, 886, 1076, 1358
AseI	ATTAAT	1 cut(s)	507
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	4 cut(s)	615, 818, 1085, 1361
BbsI	GAAGAC	1 cut(s)	1249
BbvI	GCAGC	4 cut(s)	640, 646, 668, 1211
BccI	CCATC	1 cut(s)	1231
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciT130I	CCWGG	2 cut(s)	318, 1014
BclI	TGATCA	1 cut(s)	615
BcoDI	GTCTC	4 cut(s)	137, 1271, 1346, 1419
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	2 cut(s)	654, 1027
BfuAI	ACCTGC	1 cut(s)	702
BisI	GCNGC	4 cut(s)	654, 657, 660, 1200
BlsI	GCNGC	4 cut(s)	655, 658, 661, 1201
Bme1390I	CCNGG	2 cut(s)	318, 1014
BmgT120I	GGNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	318, 1014
BmsI	GCATC	2 cut(s)	964, 1288
BpiI	GAAGAC	1 cut(s)	1249
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpmI	CTGGAG	1 cut(s)	1300
BpuEI	CTTGAG	2 cut(s)	83, 878
BsaJI	CCNNGG	1 cut(s)	1012
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	2 cut(s)	1045, 1369
Bse1I	ACTGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	1363
BseBI	CCWGG	2 cut(s)	318, 1014
BseDI	CCNNGG	1 cut(s)	1012
BseGI	GGATG	3 cut(s)	195, 1098, 1246
BseLI	CCNNNNNNNGG	2 cut(s)	1045, 1369
BseMI	GCAATG	1 cut(s)	1363
BseMII	CTCAG	5 cut(s)	372, 867, 981, 1287, 1308
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	2 cut(s)	891, 1395
BseXI	GCAGC	4 cut(s)	640, 646, 668, 1211
BsgI	GTGCAG	2 cut(s)	624, 1218
BshFI	GGCC	2 cut(s)	136, 1033
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	2 cut(s)	1045, 1369
BsmAI	GTCTC	4 cut(s)	137, 1271, 1346, 1419
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	734
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	2 cut(s)	136, 1033
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	2 cut(s)	136, 1033
BspCNI	CTCAG	5 cut(s)	371, 866, 982, 1286, 1307
BspMAI	CTGCAG	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	702
BspPI	GGATC	3 cut(s)	17, 541, 1169
BsrDI	GCAATG	1 cut(s)	1363
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	1012
Bst2UI	CCWGG	2 cut(s)	318, 1014
Bst4CI	ACNGT	2 cut(s)	120, 919
Bst6I	CTCTTC	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	105, 760
BstDEI	CTNAG	8 cut(s)	358, 853, 990, 1232, 1273, 1294, 1337, 1416
BstF5I	GGATG	3 cut(s)	195, 1098, 1246
BstMAI	GTCTC	4 cut(s)	137, 1271, 1346, 1419
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 659, 983
BstNI	CCWGG	2 cut(s)	318, 1014
BstSCI	CCNGG	2 cut(s)	316, 1012
BstSFI	CTRYAG	2 cut(s)	654, 1027
BstV1I	GCAGC	4 cut(s)	640, 646, 668, 1211
BstV2I	GAAGAC	1 cut(s)	1249
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	136, 1033
BtsCI	GGATG	3 cut(s)	195, 1098, 1246
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	85, 346
BveI	ACCTGC	1 cut(s)	702
Cac8I	GCNNGC	2 cut(s)	105, 760
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	135
CviAII	CATG	6 cut(s)	31, 234, 803, 932, 1344, 1369
DdeI	CTNAG	8 cut(s)	358, 853, 990, 1232, 1273, 1294, 1337, 1416
DraI	TTTAAA	2 cut(s)	210, 1065
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	1076
EcoRII	CCWGG	2 cut(s)	316, 1012
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	6 cut(s)	34, 237, 806, 935, 1347, 1372
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	6 cut(s)	30, 233, 802, 931, 1343, 1368
FauNDI	CATATG	1 cut(s)	664
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	4 cut(s)	654, 657, 660, 1200
FokI	GGATG	3 cut(s)	202, 1085, 1233
Fsp4HI	GCNGC	4 cut(s)	654, 657, 660, 1200
FspBI	CTAG	1 cut(s)	630
GluI	GCNGC	4 cut(s)	654, 657, 660, 1200
GsuI	CTGGAG	1 cut(s)	1300
HaeIII	GGCC	2 cut(s)	136, 1033
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	6 cut(s)	34, 237, 806, 935, 1347, 1372
HindIII	AAGCTT	4 cut(s)	308, 756, 954, 1421
HinfI	GANTC	9 cut(s)	58, 256, 266, 429, 722, 811, 857, 935, 1181
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	4 cut(s)	615, 818, 1085, 1361
Hpy188I	TCNGA	8 cut(s)	73, 434, 468, 856, 1000, 1276, 1297, 1419
HpyAV	CCTTC	3 cut(s)	315, 534, 780
HpyCH4III	ACNGT	2 cut(s)	120, 919
HpyCH4V	TGCA	9 cut(s)	7, 233, 605, 656, 662, 762, 1131, 1199, 1368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 659, 983
HpyF3I	CTNAG	8 cut(s)	358, 853, 990, 1232, 1273, 1294, 1337, 1416
Hsp92II	CATG	6 cut(s)	34, 237, 806, 935, 1347, 1372
Ksp22I	TGATCA	1 cut(s)	615
LmnI	GCTCC	3 cut(s)	596, 878, 983
Lsp1109I	GCAGC	4 cut(s)	640, 646, 668, 1211
LweI	GCATC	2 cut(s)	964, 1288
MaeI	CTAG	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	632, 1094
MboII	GAAGA	5 cut(s)	186, 257, 260, 1254, 1310
MflI	RGATCY	1 cut(s)	546
MlyI	GAGTC	4 cut(s)	67, 275, 438, 716
MmeI	TCCRAC	1 cut(s)	1063
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	5 cut(s)	209, 363, 507, 1064, 1212
MslI	CAYNNNNRTG	2 cut(s)	705, 1284
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	318, 1014
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	2 cut(s)	318, 1014
MwoI	GCNNNNNNNGC	3 cut(s)	302, 659, 983
NdeI	CATATG	1 cut(s)	664
NlaIII	CATG	6 cut(s)	34, 237, 806, 935, 1347, 1372
PctI	GAATGC	1 cut(s)	994
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	5 cut(s)	256, 811, 857, 935, 1181
PflFI	GACNNNGTC	1 cut(s)	1263
PflMI	CCANNNNNTGG	1 cut(s)	1369
PkrI	GCNGC	4 cut(s)	655, 658, 661, 1201
PleI	GAGTC	4 cut(s)	66, 274, 437, 716
PpsI	GAGTC	4 cut(s)	66, 274, 437, 716
PshBI	ATTAAT	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	316, 1012
PspGI	CCWGG	2 cut(s)	316, 1012
PspPI	GGNCC	1 cut(s)	135
PstI	CTGCAG	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	546
PsyI	GACNNNGTC	1 cut(s)	1263
PvuII	CAGCTG	1 cut(s)	659
RseI	CAYNNNNRTG	2 cut(s)	705, 1284
SaqAI	TTAA	5 cut(s)	209, 363, 507, 1064, 1212
SatI	GCNGC	4 cut(s)	654, 657, 660, 1200
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	4 cut(s)	67, 275, 438, 716
ScrFI	CCNGG	2 cut(s)	318, 1014
SfaNI	GCATC	2 cut(s)	964, 1288
SfcI	CTRYAG	2 cut(s)	654, 1027
SmiI	ATTTAAAT	1 cut(s)	210
SmiMI	CAYNNNNRTG	2 cut(s)	705, 1284
SmlI	CTYRAG	2 cut(s)	98, 893
SmoI	CTYRAG	2 cut(s)	98, 893
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	1 cut(s)	630
StyD4I	CCNGG	2 cut(s)	316, 1012
SwaI	ATTTAAAT	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	120, 919
TaqI	TCGA	3 cut(s)	123, 480, 1375
TfiI	GAWTC	5 cut(s)	256, 811, 857, 935, 1181
Tru1I	TTAA	5 cut(s)	209, 363, 507, 1064, 1212
Tru9I	TTAA	5 cut(s)	209, 363, 507, 1064, 1212
TscAI	CASTG	2 cut(s)	85, 353
TseI	GCWGC	4 cut(s)	653, 656, 659, 1199
TspDTI	ATGAA	3 cut(s)	258, 791, 948
TspGWI	ACGGA	1 cut(s)	700
TspRI	CASTG	2 cut(s)	85, 353
Tth111I	GACNNNGTC	1 cut(s)	1263
Van91I	CCANNNNNTGG	1 cut(s)	1369
VspI	ATTAAT	1 cut(s)	507
XapI	RAATTY	5 cut(s)	331, 693, 886, 1076, 1358
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.