Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007632

Physical Location & Seq

Genomic Coordinates Forward (+)

21226567 .. 21229708

Gene Structure 3142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028303

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

ATGGTGCAAGTCAAAGAATGTGATCCTAACATGGAAAAAGGGGTTTTGCTTTCTTTGAGTCCTCCGGTATCGGATAGCAGTGGAGATAACACAGTCTCAAGCCAGCCTCTGCTCAACTGTTCGAGAATGACAGGCCCTACGAGACGATCAACAAAGGGAGGCTGGACAGAGGAAGAGGATAGAATTCTAGCAGATGCTGTCGAGAAGCACAATGGCAAGAACTGGAAAAGGATTGCTGAATGTGTTCGTGGCAGAACAGATGTTCAGTGCCTTCATCGCTGGCAGAAAGTCCTCTCACCTGATCTTGTTAAAGGATTTTGGTCTAAGGAGGAAGATGATCTAATAATTGAGTTGGTCGCAAAGCAGGGGAATAAGAAATGGTCTGAAATAGCAAAGTCCTTGCCAGGCCGTATAGGCAAGCAATGTCGAGAGAGGTTTCACAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACAAATGAAGAAGAAAAGATTCTCATTGAGTCGCATAAAGCCTATGGGAACAAATGGGCTGAAATAGCAAAGCTTCTGCCTGGAAGGACAGAAAATTCAATAAAGAATCACTGGAACTGCTCAGTTAAGAAAAAATTAGAGCTACGCTCATTCCATATATCTAATATGGAAAGTCATAAAATAAAAGCAGGAGTCAGAAAGACAGAGGCGGTAAGACAAAGTCTTGATCGGATAGCCAACTTCAATAAAAATGTGGAAACCTGTTCAATTAATCTTGATCTGGTTCTTGGAACTCCTAAAGGAAGGGAGATCCAGATAAAATCTTTGGACAAAGGAAATCGCGGTTGGCTTACAAAAGGAGCTGGTGCAGATAATATGATCAAATCACCACCTAGTAACCTTTATTACAATAGAGCTGCAGCTGCATGTGGTCTAAATGTTGAACAACGGGAAGAAATTTATCATAATTATGGCAGGTTGAGAGACTCGCATTATTTATCTGCTAAACAATCAATCAAAGCTTGCAGTACTCCTTCCTGTGATCTTTGGGGTTTTCCCTATTTTCATGGAAAGAATCATAAACCCAATCACCCTATGAGTTTGTTGAACAATGGCTCAGATTCTTTTGACTACAGTAGAAGAGCTGGAAATTTTCTCAAGAAACCAGATCGTCCTGTTACAGTTGAGAGATTACATGAATCCTCTTATGAGAAAACTAAAGATGCTGGTGGAGCTACTGAGCATTTAGAGGCTTCAAATCCTGGTTGCTTGTGCTATAGGCCACTCCAACAAGAGGATTTGGACTATTTTTTTAAAAATGGTGAATTCCCAAGCATAGATAGTTACATCCAGACAGCATTTAGTTCAGTTTCCTTCTGCACTCCACCAAGCCAAGACAGAGGAATATCTGTCGATTGTAATGATCCAGATTCCGCATTGAGAAGTGCAGCAAGGACTTTTAAGAGTTCGCCATCTATCCTAAGAAAACGAAGACATCCAATTTCCAGACAAAGTCTCAACTCAGAGCTTCACTATGTCACCTCAGAAGAAATTAGCAATAACTCCAGAAACAGCCTCAACATTCTAAGTCCATGTGGTGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

528

Amino Acids

59.53

Weight (kDa)

9.07

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	52 - 98	2.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	55 - 111	5.9e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	105 - 150	8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	107 - 164	5.5e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	156 - 198	2.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	159 - 205	2.2e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43330 AT4G00540 AT4G00540
fragaria_vesca	FvH4_7g13470
prunus_persica	Prupe.2G158300_v2.0.a1 Prupe.2G158400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352951
rosa_laevigata	RLG00000028303 RLG00000028310
rosa_multiflora	Rmu_sc0005122.1_g000007 Rmu_sc0005122.1_g000012 Rmu_sc0018708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00302230
rosa_rugosa	Rorug01G0232300 Rorug01G0232600
rosa_samantha	Rh1AG245300 Rh1BG215900 Rh1CG229100 Rh1DG242000 Rh2BG076100 Rh2CG078200
rosa_wichuraiana	Rw0G014870 Rw0G014900 Rw1G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	942
AccII	CGCG	1 cut(s)	819
AciI	CCGC	3 cut(s)	686, 819, 1410
AclWI	GGATC	3 cut(s)	17, 781, 1394
AcsI	RAATTY	5 cut(s)	183, 571, 933, 1126, 1301
AfaI	GTAC	1 cut(s)	1006
AfiI	CCNNNNNNNGG	1 cut(s)	1270
AgsI	TTSAA	6 cut(s)	576, 721, 744, 920, 1084, 1233
AjnI	CCWGG	3 cut(s)	403, 556, 1237
AjuI	GAANNNNNNNTTGG	2 cut(s)	805, 837
AluBI	AGCT	9 cut(s)	550, 619, 839, 893, 899, 998, 1121, 1211, 1504
AluI	AGCT	9 cut(s)	550, 619, 839, 893, 899, 998, 1121, 1211, 1504
Alw26I	GTCTC	5 cut(s)	100, 136, 954, 1496, 1571
AlwI	GGATC	3 cut(s)	17, 781, 1394
AlwNI	CAGNNNCTG	2 cut(s)	109, 197
AoxI	GGCC	3 cut(s)	133, 406, 1256
ApeKI	GCWGC	4 cut(s)	893, 896, 899, 1424
ApoI	RAATTY	5 cut(s)	183, 571, 933, 1126, 1301
AseI	ATTAAT	1 cut(s)	747
Asp700I	GAANNNNTTC	2 cut(s)	243, 495
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	5 cut(s)	288, 855, 1058, 1310, 1507
BbsI	GAAGAC	1 cut(s)	1474
BbvI	GCAGC	4 cut(s)	880, 886, 908, 1436
BccI	CCATC	1 cut(s)	1456
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	3 cut(s)	405, 558, 1239
BclI	TGATCA	1 cut(s)	855
BcoDI	GTCTC	5 cut(s)	100, 136, 954, 1496, 1571
BfaI	CTAG	2 cut(s)	188, 870
BfmI	CTRYAG	3 cut(s)	894, 1108, 1252
BfuAI	ACCTGC	1 cut(s)	942
BglI	GCCNNNNNGGC	1 cut(s)	414
BisI	GCNGC	4 cut(s)	894, 897, 900, 1425
BlsI	GCNGC	4 cut(s)	895, 898, 901, 1426
BmcAI	AGTACT	1 cut(s)	1006
Bme1390I	CCNGG	3 cut(s)	405, 558, 1239
BmgT120I	GGNCC	1 cut(s)	134
BmrFI	CCNGG	3 cut(s)	405, 558, 1239
BmsI	GCATC	2 cut(s)	184, 1189
BpiI	GAAGAC	1 cut(s)	1474
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	1 cut(s)	1525
BpuEI	CTTGAG	2 cut(s)	82, 1118
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	1270
Bse1I	ACTGG	2 cut(s)	227, 593
Bse3DI	GCAATG	1 cut(s)	428
BseBI	CCWGG	3 cut(s)	405, 558, 1239
BseGI	GGATG	2 cut(s)	1323, 1471
BseLI	CCNNNNNNNGG	1 cut(s)	1270
BseMI	GCAATG	1 cut(s)	428
BseMII	CTCAG	5 cut(s)	612, 1107, 1206, 1512, 1533
BseNI	ACTGG	2 cut(s)	227, 593
BseXI	GCAGC	4 cut(s)	880, 886, 908, 1436
BsgI	GTGCAG	3 cut(s)	864, 1339, 1443
Bsh1236I	CGCG	1 cut(s)	819
BshFI	GGCC	3 cut(s)	135, 408, 1258
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	1270
BsmAI	GTCTC	5 cut(s)	100, 136, 954, 1496, 1571
BsmBI	CGTCTC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	135, 408, 1258
BspACI	CCGC	3 cut(s)	686, 819, 1410
BspANI	GGCC	3 cut(s)	135, 408, 1258
BspCNI	CTCAG	5 cut(s)	611, 1106, 1207, 1511, 1532
BspFNI	CGCG	1 cut(s)	819
BspMAI	CTGCAG	1 cut(s)	898
BspMI	ACCTGC	1 cut(s)	942
BspPI	GGATC	3 cut(s)	17, 781, 1394
BspQI	GCTCTTC	1 cut(s)	1111
BsrDI	GCAATG	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	227, 593
Bst2UI	CCWGG	3 cut(s)	405, 558, 1239
Bst4CI	ACNGT	4 cut(s)	94, 119, 1112, 1159
Bst6I	CTCTTC	2 cut(s)	168, 1111
BstC8I	GCNNGC	4 cut(s)	104, 281, 419, 1000
BstDEI	CTNAG	8 cut(s)	324, 598, 1093, 1215, 1457, 1498, 1519, 1562
BstF5I	GGATG	2 cut(s)	1323, 1471
BstFNI	CGCG	1 cut(s)	819
BstMAI	GTCTC	5 cut(s)	100, 136, 954, 1496, 1571
BstMWI	GCNNNNNNNGC	5 cut(s)	276, 414, 542, 899, 1208
BstNI	CCWGG	3 cut(s)	405, 558, 1239
BstNSI	RCATGY	1 cut(s)	906
BstSCI	CCNGG	3 cut(s)	403, 556, 1237
BstSFI	CTRYAG	3 cut(s)	894, 1108, 1252
BstUI	CGCG	1 cut(s)	819
BstV1I	GCAGC	4 cut(s)	880, 886, 908, 1436
BstV2I	GAAGAC	1 cut(s)	1474
BstX2I	RGATCY	1 cut(s)	786
BstYI	RGATCY	1 cut(s)	786
BsuRI	GGCC	3 cut(s)	135, 408, 1258
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	1323, 1471
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	85, 272, 586
BveI	ACCTGC	1 cut(s)	942
Cac8I	GCNNGC	4 cut(s)	104, 281, 419, 1000
CaiI	CAGNNNCTG	2 cut(s)	109, 197
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	1005
CviAII	CATG	6 cut(s)	31, 474, 903, 1043, 1172, 1569
CviQI	GTAC	1 cut(s)	1005
DdeI	CTNAG	8 cut(s)	324, 598, 1093, 1215, 1457, 1498, 1519, 1562
DraI	TTTAAA	2 cut(s)	450, 1291
Eam1104I	CTCTTC	2 cut(s)	168, 1111
EarI	CTCTTC	2 cut(s)	168, 1111
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRI	GAATTC	2 cut(s)	183, 1301
EcoRII	CCWGG	3 cut(s)	403, 556, 1237
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	6 cut(s)	34, 477, 906, 1046, 1175, 1572
FatI	CATG	6 cut(s)	30, 473, 902, 1042, 1171, 1568
FbaI	TGATCA	1 cut(s)	855
Fnu4HI	GCNGC	4 cut(s)	894, 897, 900, 1425
FokI	GGATG	2 cut(s)	1310, 1458
Fsp4HI	GCNGC	4 cut(s)	894, 897, 900, 1425
FspBI	CTAG	2 cut(s)	188, 870
GluI	GCNGC	4 cut(s)	894, 897, 900, 1425
GsuI	CTGGAG	1 cut(s)	1525
HaeIII	GGCC	3 cut(s)	135, 408, 1258
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	6 cut(s)	34, 477, 906, 1046, 1175, 1572
HindIII	AAGCTT	2 cut(s)	548, 996
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	5 cut(s)	288, 855, 1058, 1310, 1507
Hpy188I	TCNGA	7 cut(s)	73, 385, 674, 708, 1096, 1501, 1522
HpyAV	CCTTC	5 cut(s)	281, 555, 774, 1020, 1360
HpyCH4III	ACNGT	4 cut(s)	94, 119, 1112, 1159
HpyCH4V	TGCA	8 cut(s)	7, 473, 845, 896, 902, 1002, 1356, 1424
HpyF10VI	GCNNNNNNNGC	5 cut(s)	276, 414, 542, 899, 1208
HpyF3I	CTNAG	8 cut(s)	324, 598, 1093, 1215, 1457, 1498, 1519, 1562
Hsp92II	CATG	6 cut(s)	34, 477, 906, 1046, 1175, 1572
Ksp22I	TGATCA	1 cut(s)	855
LguI	GCTCTTC	1 cut(s)	1111
LmnI	GCTCC	2 cut(s)	836, 1208
Lsp1109I	GCAGC	4 cut(s)	880, 886, 908, 1436
LweI	GCATC	2 cut(s)	184, 1189
MaeI	CTAG	2 cut(s)	188, 870
MaeIII	GTNAC	4 cut(s)	872, 1153, 1319, 1513
MboII	GAAGA	8 cut(s)	185, 344, 497, 500, 941, 1128, 1479, 1535
MflI	RGATCY	1 cut(s)	786
MlyI	GAGTC	4 cut(s)	67, 515, 678, 956
MmeI	TCCRAC	1 cut(s)	1288
MroXI	GAANNNNTTC	2 cut(s)	243, 495
MseI	TTAA	6 cut(s)	309, 449, 603, 747, 1290, 1437
MslI	CAYNNNNRTG	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	3 cut(s)	405, 558, 1239
MvaI	CCWGG	3 cut(s)	405, 558, 1239
MvnI	CGCG	1 cut(s)	819
MwoI	GCNNNNNNNGC	5 cut(s)	276, 414, 542, 899, 1208
NlaIII	CATG	6 cut(s)	34, 477, 906, 1046, 1175, 1572
NmuCI	GTSAC	1 cut(s)	1513
NspI	RCATGY	1 cut(s)	906
PciSI	GCTCTTC	1 cut(s)	1111
PdmI	GAANNNNTTC	2 cut(s)	243, 495
PfeI	GAWTC	6 cut(s)	496, 583, 1051, 1097, 1175, 1406
PflFI	GACNNNGTC	2 cut(s)	696, 1488
PkrI	GCNGC	4 cut(s)	895, 898, 901, 1426
PleI	GAGTC	4 cut(s)	66, 514, 677, 956
PpsI	GAGTC	4 cut(s)	66, 514, 677, 956
PshBI	ATTAAT	1 cut(s)	747
Psp6I	CCWGG	3 cut(s)	403, 556, 1237
PspGI	CCWGG	3 cut(s)	403, 556, 1237
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	898
PstNI	CAGNNNCTG	2 cut(s)	109, 197
PsuI	RGATCY	1 cut(s)	786
PsyI	GACNNNGTC	2 cut(s)	696, 1488
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	1 cut(s)	1006
RsaNI	GTAC	1 cut(s)	1005
RseI	CAYNNNNRTG	1 cut(s)	945
SapI	GCTCTTC	1 cut(s)	1111
SaqAI	TTAA	6 cut(s)	309, 449, 603, 747, 1290, 1437
SatI	GCNGC	4 cut(s)	894, 897, 900, 1425
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	1006
SchI	GAGTC	4 cut(s)	67, 515, 678, 956
ScrFI	CCNGG	3 cut(s)	405, 558, 1239
SfaNI	GCATC	2 cut(s)	184, 1189
SfcI	CTRYAG	3 cut(s)	894, 1108, 1252
SmiI	ATTTAAAT	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	945
SmlI	CTYRAG	2 cut(s)	97, 1133
SmoI	CTYRAG	2 cut(s)	97, 1133
SsiI	CCGC	3 cut(s)	686, 819, 1410
SspMI	CTAG	2 cut(s)	188, 870
StyD4I	CCNGG	3 cut(s)	403, 556, 1237
SwaI	ATTTAAAT	1 cut(s)	450
TaaI	ACNGT	4 cut(s)	94, 119, 1112, 1159
TaqI	TCGA	4 cut(s)	122, 201, 427, 1389
TatI	WGTACW	1 cut(s)	1004
TfiI	GAWTC	6 cut(s)	496, 583, 1051, 1097, 1175, 1406
Tru1I	TTAA	6 cut(s)	309, 449, 603, 747, 1290, 1437
Tru9I	TTAA	6 cut(s)	309, 449, 603, 747, 1290, 1437
TscAI	CASTG	3 cut(s)	85, 272, 593
TseFI	GTSAC	1 cut(s)	1513
TseI	GCWGC	4 cut(s)	893, 896, 899, 1424
Tsp45I	GTSAC	1 cut(s)	1513
TspDTI	ATGAA	4 cut(s)	263, 498, 1031, 1188
TspRI	CASTG	3 cut(s)	85, 272, 593
Tth111I	GACNNNGTC	2 cut(s)	696, 1488
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	5 cut(s)	183, 571, 933, 1126, 1301
XceI	RCATGY	1 cut(s)	906
XmnI	GAANNNNTTC	2 cut(s)	243, 495
XspI	CTAG	2 cut(s)	188, 870
ZrmI	AGTACT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.