Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005409

Physical Location & Seq

Genomic Coordinates Reverse (-)

17716051 .. 17716808

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTGCGAATCTAAGGAACAATGCGTTCTTGTCTTCTCTCATGTTTCTTCTCTTGATCGGTTCATCATACGCAATCACAAGTTCAGAAATGAGCACAATCTGTGACAAAACCTTAAATCCATCTTTCTGTCTTAAGTTCCTCAATACGAAATTCGCATCGCCTAATCTTCAAGCCTTGGCAAAAACCACACTTGATTCTACACAAGCGAGAGCTACACAAACGTTAAAGAAACTCCAATCTATTATCGATGGAGGAGTCGACCCTCGATCTAAGTTAGCTTACAGGTCATGCGTAGATGAATACGAGAGCGCGATTGGAAACCTCGAGGAAGCTTTTGAGCATTTAGCTTCAGGAGATGGTATGGGGATGAACATGAAAGTTTCTGCTGCATTGGATGGAGCTGATACATGTTTAGATGATGTGAAGAGATTGAGATCAGTAGATTCTTCGGTTGTGAATAACAGTAAAACAATTAAGAATCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

176

Amino Acids

18.97

Weight (kDa)

7.58

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	31 - 169	4.6e-23	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48020 AT3G17220
fragaria_vesca	FvH4_4g20490 FvH4_4g20520 FvH4_4g20820
malus_domestica	MD16G1147400.v1.1
pyrus_communis	pycom16g12580
rosa_chinensis	RchiOBHm_Chr4g0425971
rosa_laevigata	RLG00000007305 RLG00000007327
rosa_multiflora	Rmu_co8326215.1_g000001 Rmu_sc0000730.1_g000043 Rmu_sc0002091.1_g000005 Rmu_sc0007871.1_g000003 Rmu_ssc0000281.1_g000022
rosa_roxburghii	Rroxscaffold_5G00367980 Rroxscaffold_5G00368310
rosa_rugosa	Rorug04G0209900
rosa_samantha	Rh4AG264700 Rh4AG267000 Rh4BG270600 Rh4BG272900 Rh4CG283200 Rh4CG286700 Rh4CG287000 Rh4DG267200 Rh4DG269500
rosa_wichuraiana	Rw4G022860 Rw4G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	1 cut(s)	314
AclI	AACGTT	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	336
AflII	CTTAAG	1 cut(s)	134
AflIII	ACRYGT	2 cut(s)	410, 513
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	5 cut(s)	215, 281, 335, 350, 404
AluI	AGCT	5 cut(s)	215, 281, 335, 350, 404
Alw21I	GWGCWC	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	5, 389
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	4 cut(s)	130, 245, 353, 392
BfrI	CTTAAG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	6, 390
BlsI	GCNGC	2 cut(s)	7, 391
BmeT110I	CYCGRG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	524
BsaBI	GATNNNNATC	1 cut(s)	436
BsaJI	CCNNGG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	375, 403
BseJI	GATNNNNATC	1 cut(s)	436
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	376
Bsh1236I	CGCG	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	57, 269, 437
BspDI	ATCGAT	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	314
BspTI	CTTAAG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	57, 269, 437
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	422
BstAFI	CTTAAG	1 cut(s)	134
BstBAI	YACGTR	1 cut(s)	524
BstDEI	CTNAG	2 cut(s)	14, 273
BstF5I	GGATG	2 cut(s)	375, 403
BstFNI	CGCG	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	3 cut(s)	60, 272, 440
BstMBI	GATC	3 cut(s)	57, 269, 437
BstNSI	RCATGY	2 cut(s)	414, 517
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	249
BsuTUI	ATCGAT	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	375, 403
CfoI	GCGC	1 cut(s)	314
ClaI	ATCGAT	1 cut(s)	249
CviAII	CATG	5 cut(s)	43, 291, 376, 411, 514
CviJI	RGCY	7 cut(s)	5, 176, 215, 281, 335, 350, 404
CviKI_1	RGCY	7 cut(s)	5, 176, 215, 281, 335, 350, 404
DdeI	CTNAG	2 cut(s)	14, 273
DpnI	GATC	3 cut(s)	59, 271, 439
DpnII	GATC	3 cut(s)	57, 269, 437
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	5 cut(s)	46, 294, 379, 414, 517
FaiI	YATR	7 cut(s)	44, 70, 292, 365, 377, 412, 515
FatI	CATG	5 cut(s)	42, 290, 375, 410, 513
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	6, 390
FokI	GGATG	2 cut(s)	382, 410
Fsp4HI	GCNGC	2 cut(s)	6, 390
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	2 cut(s)	6, 390
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	5 cut(s)	46, 294, 379, 414, 517
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	5 cut(s)	10, 197, 258, 446, 481
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	55, 354
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	2 cut(s)	224, 523
HpyCH4V	TGCA	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	14, 273
HpySE526I	ACGT	2 cut(s)	224, 523
Hsp92II	CATG	5 cut(s)	46, 294, 379, 414, 517
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	3 cut(s)	57, 269, 437
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	2 cut(s)	271, 339
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	1 cut(s)	167
MaeII	ACGT	2 cut(s)	224, 523
MaeIII	GTNAC	2 cut(s)	104, 516
MalI	GATC	3 cut(s)	59, 271, 439
MboI	GATC	3 cut(s)	57, 269, 437
MboII	GAAGA	5 cut(s)	27, 41, 161, 439, 441
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	3 cut(s)	152, 474, 526
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	152, 248, 276, 322, 335
MseI	TTAA	5 cut(s)	116, 135, 227, 477, 529
MspCI	CTTAAG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	314
NdeII	GATC	3 cut(s)	57, 269, 437
NlaIII	CATG	5 cut(s)	46, 294, 379, 414, 517
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	2 cut(s)	414, 517
PaeR7I	CTCGAG	1 cut(s)	326
PciI	ACATGT	2 cut(s)	410, 513
PfeI	GAWTC	4 cut(s)	10, 197, 446, 481
PkrI	GCNGC	2 cut(s)	7, 391
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	524
PscI	ACATGT	2 cut(s)	410, 513
Psp1406I	AACGTT	1 cut(s)	224
PspXI	VCTCGAGB	1 cut(s)	326
SalI	GTCGAC	1 cut(s)	260
SaqAI	TTAA	5 cut(s)	116, 135, 227, 477, 529
SatI	GCNGC	2 cut(s)	6, 390
Sau3AI	GATC	3 cut(s)	57, 269, 437
SchI	GAGTC	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	98
SfaNI	GCATC	1 cut(s)	167
Sfr274I	CTCGAG	1 cut(s)	326
SlaI	CTCGAG	1 cut(s)	326
SmlI	CTYRAG	2 cut(s)	134, 326
SmoI	CTYRAG	2 cut(s)	134, 326
Sse9I	AATT	3 cut(s)	152, 474, 526
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	2 cut(s)	227, 526
TaqI	TCGA	4 cut(s)	249, 261, 268, 327
TasI	AATT	3 cut(s)	152, 474, 526
TfiI	GAWTC	4 cut(s)	10, 197, 446, 481
Tru1I	TTAA	5 cut(s)	116, 135, 227, 477, 529
Tru9I	TTAA	5 cut(s)	116, 135, 227, 477, 529
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	5, 389
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	4 cut(s)	54, 315, 386, 392
Vha464I	CTTAAG	1 cut(s)	134
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	2 cut(s)	414, 517
XhoI	CTCGAG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.