Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007871.1

Orthogroup ID

OG0005409

Physical Location & Seq

Genomic Coordinates Forward (+)

8954 .. 9463

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007871.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgtctttcctggttctgatgagtactactccctcctctgcttttactctaaacaaggatatttgctccaacaccaacgtcttgagtcgctctttctgttcgcaatttctgggttctaatccggttgtgatcaagtccctccttctcagcctcgccgaggccactatagatgttgcatcttcgaacgctacgaagaccagccagctgataatcaagtggctaaaccaaacagacaatccccaactgaagaatgcaattagacaatgtccgactccgtacaatgaggccattgctgatctcaaggaagccaaagagaaggtcaggtctggtgactatgttgcactacagcgtgcagcagttgatgcttctataaagtttcatgcatgcgaagagaaattcgaggacacgccacctgatccattgccattgtgcagaaatagtggtgaattagctgctattactagcatccttatagctgtatttgaaattctggcaaaatcatacgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

169

Amino Acids

18.37

Weight (kDa)

5.84

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48020 AT3G17220
fragaria_vesca	FvH4_4g20490 FvH4_4g20520 FvH4_4g20820
malus_domestica	MD16G1147400.v1.1
pyrus_communis	pycom16g12580
rosa_chinensis	RchiOBHm_Chr4g0425971
rosa_laevigata	RLG00000007305 RLG00000007327
rosa_multiflora	Rmu_co8326215.1_g000001 Rmu_sc0000730.1_g000043 Rmu_sc0002091.1_g000005 Rmu_sc0007871.1_g000003 Rmu_ssc0000281.1_g000022
rosa_roxburghii	Rroxscaffold_5G00367980 Rroxscaffold_5G00368310
rosa_rugosa	Rorug04G0209900
rosa_samantha	Rh4AG264700 Rh4AG267000 Rh4BG270600 Rh4BG272900 Rh4CG283200 Rh4CG286700 Rh4CG287000 Rh4DG267200 Rh4DG269500
rosa_wichuraiana	Rw4G022860 Rw4G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	395, 486
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	2 cut(s)	25, 278
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	3 cut(s)	205, 452, 476
AluI	AGCT	3 cut(s)	205, 452, 476
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	2 cut(s)	159, 285
ApeKI	GCWGC	2 cut(s)	353, 452
ApoI	RAATTY	2 cut(s)	395, 486
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AsuHPI	GGTGA	2 cut(s)	341, 455
AsuII	TTCGAA	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	365, 439
BciT130I	CCWGG	1 cut(s)	11
BclI	TGATCA	1 cut(s)	129
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	2 cut(s)	165, 344
BisI	GCNGC	2 cut(s)	354, 453
BlsI	GCNGC	2 cut(s)	355, 454
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	3 cut(s)	185, 352, 474
BpiI	GAAGAC	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
Bpu14I	TTCGAA	1 cut(s)	182
BpuEI	CTTGAG	2 cut(s)	103, 284
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse3DI	GCAATG	2 cut(s)	288, 419
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	2 cut(s)	288, 419
BseMII	CTCAG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	365, 439
BsgI	GTGCAG	2 cut(s)	372, 451
BshFI	GGCC	2 cut(s)	161, 287
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	161, 287
Bsp119I	TTCGAA	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	129, 295, 415
BspANI	GGCC	2 cut(s)	161, 287
BspCNI	CTCAG	1 cut(s)	159
BspPI	GGATC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	288, 419
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	3 cut(s)	129, 295, 415
Bst2UI	CCWGG	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	203, 351, 385
BstDEI	CTNAG	1 cut(s)	146
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	465
BstKTI	GATC	3 cut(s)	132, 298, 418
BstMBI	GATC	3 cut(s)	129, 295, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	2 cut(s)	165, 344
BstV1I	GCAGC	2 cut(s)	365, 439
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	161, 287
BtsCI	GGATG	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	203, 351, 385
Csp6I	GTAC	2 cut(s)	24, 277
CviAII	CATG	2 cut(s)	380, 384
CviJI	RGCY	9 cut(s)	150, 161, 201, 205, 220, 287, 308, 452, 476
CviKI_1	RGCY	9 cut(s)	150, 161, 201, 205, 220, 287, 308, 452, 476
CviQI	GTAC	2 cut(s)	24, 277
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	3 cut(s)	131, 297, 417
DpnII	GATC	3 cut(s)	129, 295, 415
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	385
FaeI	CATG	2 cut(s)	383, 387
FaiI	YATR	7 cut(s)	167, 336, 371, 381, 385, 473, 502
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	2 cut(s)	379, 383
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	354, 453
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	2 cut(s)	354, 453
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	2 cut(s)	354, 453
HaeIII	GGCC	2 cut(s)	161, 287
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	2 cut(s)	383, 387
HinfI	GANTC	2 cut(s)	85, 271
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	341, 455
Hpy188I	TCNGA	2 cut(s)	18, 270
Hpy188III	TCNNGA	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	152, 310
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	6 cut(s)	176, 254, 341, 353, 383, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	383, 387
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	129, 295, 415
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	9 cut(s)	23, 95, 135, 211, 215, 307, 312, 426, 476
Lsp1109I	GCAGC	2 cut(s)	365, 439
LweI	GCATC	3 cut(s)	185, 352, 474
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	3 cut(s)	131, 297, 417
MboI	GATC	3 cut(s)	129, 295, 415
MboII	GAAGA	4 cut(s)	171, 205, 259, 401
MluCI	AATT	5 cut(s)	104, 255, 395, 446, 486
MlyI	GAGTC	2 cut(s)	94, 265
MmeI	TCCRAC	2 cut(s)	93, 293
MnlI	CCTC	7 cut(s)	43, 46, 149, 151, 161, 277, 394
Mph1103I	ATGCAT	1 cut(s)	385
MslI	CAYNNNNRTG	1 cut(s)	505
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	3 cut(s)	129, 295, 415
NlaIII	CATG	2 cut(s)	383, 387
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	329
NsiI	ATGCAT	1 cut(s)	385
NspI	RCATGY	1 cut(s)	387
NspV	TTCGAA	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PctI	GAATGC	1 cut(s)	256
PflFI	GACNNNGTC	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	355, 454
PleI	GAGTC	2 cut(s)	93, 265
PpsI	GAGTC	2 cut(s)	93, 265
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PsyI	GACNNNGTC	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	25, 278
RsaNI	GTAC	2 cut(s)	24, 277
RseI	CAYNNNNRTG	1 cut(s)	505
SatI	GCNGC	2 cut(s)	354, 453
Sau3AI	GATC	3 cut(s)	129, 295, 415
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	2 cut(s)	94, 265
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	7 cut(s)	81, 207, 321, 326, 415, 454, 478
SfaNI	GCATC	3 cut(s)	185, 352, 474
SfcI	CTRYAG	2 cut(s)	165, 344
SfuI	TTCGAA	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	505
SmlI	CTYRAG	2 cut(s)	82, 299
SmoI	CTYRAG	2 cut(s)	82, 299
SphI	GCATGC	1 cut(s)	387
Sse9I	AATT	5 cut(s)	104, 255, 395, 446, 486
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	9
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	182, 399
TasI	AATT	5 cut(s)	104, 255, 395, 446, 486
TatI	WGTACW	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	2 cut(s)	353, 452
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	1 cut(s)	264
Tth111I	GACNNNGTC	1 cut(s)	264
XagI	CCTNNNNNAGG	1 cut(s)	155
XapI	RAATTY	2 cut(s)	395, 486
XceI	RCATGY	1 cut(s)	387
XspI	CTAG	1 cut(s)	462
ZrmI	AGTACT	1 cut(s)	25
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.