Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005409

Physical Location & Seq

Genomic Coordinates Reverse (-)

23926918 .. 23928351

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCCTTCCCATCCTCCTCCGGCATCTCTCTCCTCCTTCTCCGCCTCCAGCTTCCAAACACTTCCCCGTCTTCGGCCTGCACCTCGAAATCACTCACTCACTCCCCTTCCCTCACCTCTAAGCTCTCAAAAAACCTAGCCTCCCCGAGCTCGCTAGATCTCTCAAAGAGCTGCTTGTCTCCGTCGCCTCAATCGACCGGATTCCACTCTCAGGACAATACAGTAAAATTAAGATACTCTAGGTTTTACTGCATTTTTTTTGTTTTTTTTAGTTGTGATCAAGTCCCCCTTCACAGCCTCGCTGAGGCCACTATAGATGTCGCATCTTCTAGCGCTACAGAAACCAGCCAGCAGATAATCAAGTGGCAAAACCAAACAAACAATCCTGAACTGAAGAATGCAATTAGTCAGTGTCCGACTCCGTACAATGAGGCCATTGCTGATCTCAAGGAAGCCAAAGAGAAGATCACATCTGGTGACTATGTTGCACTACAACGTGCAGCAGTTGATGCTTCCATAAAGTTTCATGCATGTGAAGAGAAATTCGAGGACACACCACCTGATACATCGCCATTGTGTGGTACTAGTAGTGAATTAGCTGCTATCTCCAGCATCCTTATAGCTATTTTTGAGATTCTGGCAAAATTATATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

219

Amino Acids

23.55

Weight (kDa)

5.79

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	97 - 209	1.3e-08	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48020 AT3G17220
fragaria_vesca	FvH4_4g20490 FvH4_4g20520 FvH4_4g20820
malus_domestica	MD16G1147400.v1.1
pyrus_communis	pycom16g12580
rosa_chinensis	RchiOBHm_Chr4g0425971
rosa_laevigata	RLG00000007305 RLG00000007327
rosa_multiflora	Rmu_co8326215.1_g000001 Rmu_sc0000730.1_g000043 Rmu_sc0002091.1_g000005 Rmu_sc0007871.1_g000003 Rmu_ssc0000281.1_g000022
rosa_roxburghii	Rroxscaffold_5G00367980 Rroxscaffold_5G00368310
rosa_rugosa	Rorug04G0209900
rosa_samantha	Rh4AG264700 Rh4AG267000 Rh4BG270600 Rh4BG272900 Rh4CG283200 Rh4CG286700 Rh4CG287000 Rh4DG267200 Rh4DG269500
rosa_wichuraiana	Rw4G022860 Rw4G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	578
AciI	CCGC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	2 cut(s)	425, 583
AfeI	AGCGCT	1 cut(s)	334
AfiI	CCNNNNNNNGG	4 cut(s)	73, 211, 304, 578
AhlI	ACTAGT	1 cut(s)	584
AluBI	AGCT	6 cut(s)	52, 124, 150, 171, 599, 623
AluI	AGCT	6 cut(s)	52, 124, 150, 171, 599, 623
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	145
Aor51HI	AGCGCT	1 cut(s)	334
AoxI	GGCC	3 cut(s)	75, 306, 432
ApeKI	GCWGC	3 cut(s)	171, 500, 599
ApoI	RAATTY	1 cut(s)	542
AspLEI	GCGC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	106, 488
AvaI	CYCGRG	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	158, 512, 586
BccI	CCATC	1 cut(s)	19
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	183
BcuI	ACTAGT	1 cut(s)	584
BfaI	CTAG	5 cut(s)	137, 155, 240, 330, 585
BfmI	CTRYAG	2 cut(s)	312, 336
BfoI	RGCGCY	1 cut(s)	336
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	3 cut(s)	172, 501, 600
BlsI	GCNGC	3 cut(s)	173, 502, 601
BmeT110I	CYCGRG	1 cut(s)	145
BmsI	GCATC	4 cut(s)	33, 332, 499, 621
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	2 cut(s)	32, 592
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 211, 304, 578
Bse3DI	GCAATG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	11, 612
BseLI	CCNNNNNNNGG	4 cut(s)	73, 211, 304, 578
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	224, 294
BseRI	GAGGAG	2 cut(s)	7, 23
BseXI	GCAGC	3 cut(s)	158, 512, 586
BsgI	GTGCAG	2 cut(s)	64, 519
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	77, 308, 434
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	21, 198
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	4 cut(s)	73, 211, 304, 578
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	3 cut(s)	77, 308, 434
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	157, 277, 442, 465
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	3 cut(s)	77, 308, 434
BspCNI	CTCAG	2 cut(s)	223, 295
BsrDI	GCAATG	1 cut(s)	435
BssMI	GATC	4 cut(s)	157, 277, 442, 465
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	79, 152, 350
BstDEI	CTNAG	3 cut(s)	120, 210, 303
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	11, 612
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	4 cut(s)	160, 280, 445, 468
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	4 cut(s)	157, 277, 442, 465
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	534
BstSFI	CTRYAG	2 cut(s)	312, 336
BstV1I	GCAGC	3 cut(s)	158, 512, 586
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	77, 308, 434
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	11, 612
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	3 cut(s)	79, 152, 350
CfoI	GCGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	424, 582
CviAII	CATG	2 cut(s)	527, 531
CviQI	GTAC	2 cut(s)	424, 582
DdeI	CTNAG	3 cut(s)	120, 210, 303
DpnI	GATC	4 cut(s)	159, 279, 444, 467
DpnII	GATC	4 cut(s)	157, 277, 442, 465
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	152
FaeI	CATG	2 cut(s)	530, 534
FaiI	YATR	8 cut(s)	314, 483, 518, 528, 532, 620, 649, 651
FalI	AAGNNNNNCTT	4 cut(s)	158, 190, 273, 305
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	2 cut(s)	526, 530
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	172, 501, 600
FokI	GGATG	1 cut(s)	599
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	172, 501, 600
FspBI	CTAG	5 cut(s)	137, 155, 240, 330, 585
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	3 cut(s)	172, 501, 600
GsuI	CTGGAG	2 cut(s)	32, 592
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	3 cut(s)	77, 308, 434
HapII	CCGG	2 cut(s)	21, 198
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	530, 534
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	3 cut(s)	201, 418, 634
HpaII	CCGG	2 cut(s)	21, 198
HphI	GGTGA	2 cut(s)	106, 488
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	2 cut(s)	212, 386
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	4 cut(s)	16, 47, 117, 299
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	6 cut(s)	81, 252, 401, 488, 500, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	3 cut(s)	120, 210, 303
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	2 cut(s)	530, 534
HspAI	GCGC	1 cut(s)	333
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	157, 277, 442, 465
Lsp1109I	GCAGC	3 cut(s)	158, 512, 586
LweI	GCATC	4 cut(s)	33, 332, 499, 621
MaeI	CTAG	5 cut(s)	137, 155, 240, 330, 585
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	4 cut(s)	159, 279, 444, 467
MboI	GATC	4 cut(s)	157, 277, 442, 465
MboII	GAAGA	5 cut(s)	63, 318, 406, 475, 548
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	5 cut(s)	227, 402, 542, 593, 644
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	440
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	2 cut(s)	21, 198
Mva1269I	GAATGC	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	4 cut(s)	157, 277, 442, 465
NlaIII	CATG	2 cut(s)	530, 534
NmuCI	GTSAC	1 cut(s)	476
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	201, 634
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	3 cut(s)	173, 502, 601
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Psp124BI	GAGCTC	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	425, 583
RsaNI	GTAC	2 cut(s)	424, 582
RseI	CAYNNNNRTG	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	3 cut(s)	172, 501, 600
Sau3AI	GATC	4 cut(s)	157, 277, 442, 465
SchI	GAGTC	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	152
SfaNI	GCATC	4 cut(s)	33, 332, 499, 621
SfcI	CTRYAG	2 cut(s)	312, 336
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SpeI	ACTAGT	1 cut(s)	584
Sse9I	AATT	5 cut(s)	227, 402, 542, 593, 644
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	5 cut(s)	137, 155, 240, 330, 585
SstI	GAGCTC	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	3 cut(s)	86, 194, 546
TasI	AATT	5 cut(s)	227, 402, 542, 593, 644
TfiI	GAWTC	2 cut(s)	201, 634
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	416
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	3 cut(s)	171, 500, 599
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	515
TspGWI	ACGGA	2 cut(s)	171, 411
TspRI	CASTG	1 cut(s)	416
Van91I	CCANNNNNTGG	1 cut(s)	578
XagI	CCTNNNNNAGG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	542
XceI	RCATGY	1 cut(s)	534
XspI	CTAG	5 cut(s)	137, 155, 240, 330, 585
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.