Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005409

Physical Location & Seq

Genomic Coordinates Forward (+)

54424280 .. 54424828

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG286700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTTTCTTCTTCTTCCTCAATAGCTTGCATTGCTGTAGTGTCTTTCCTGGTTCTGATGAGTACTACTCCCTCCTCTGCTTTTACTCTAAACAAGGATATTTGCTCCAACACCAACGTCTTGAGTCGCTCTTTCTGTTCGCAATTTCTGGGTTCTAATCCGGTTGTGATCAAGTCCCTCCTTCTCAGTCTAGCCGAGGCCACTATAGATGTTGCATCTTCGAACGCTACGAAGACCAGCCAGCTGATAATCAAGTGGCTAAACCAAACAGACAATCCCCAACTGAAGAATGCAATTAGACAATGTCCGACTCCGTACAATGAGGCCATTGCTGATCTCAAGGAAGCCAAAGAGAAGGTCAGGTCTGGTGACTATGTTGCACTACAACGTGCAGTAGTTGATGCTTCTATAAAGTTTCATGCATGCGAAGAGAAATTCGAGGACACGCCACCTGATCCATCGCCATTGTGCAGAAATAGTGGTGAATTAGCTGCTATTTCTAGCATCCTTATAGCTGTATTTGAAATTCTGGCAAAATCATACGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

182

Amino Acids

19.56

Weight (kDa)

5.84

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	32 - 172	1.7e-13	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48020 AT3G17220
fragaria_vesca	FvH4_4g20490 FvH4_4g20520 FvH4_4g20820
malus_domestica	MD16G1147400.v1.1
pyrus_communis	pycom16g12580
rosa_chinensis	RchiOBHm_Chr4g0425971
rosa_laevigata	RLG00000007305 RLG00000007327
rosa_multiflora	Rmu_co8326215.1_g000001 Rmu_sc0000730.1_g000043 Rmu_sc0002091.1_g000005 Rmu_sc0007871.1_g000003 Rmu_ssc0000281.1_g000022
rosa_roxburghii	Rroxscaffold_5G00367980 Rroxscaffold_5G00368310
rosa_rugosa	Rorug04G0209900
rosa_samantha	Rh4AG264700 Rh4AG267000 Rh4BG270600 Rh4BG272900 Rh4CG283200 Rh4CG286700 Rh4CG287000 Rh4DG267200 Rh4DG269500
rosa_wichuraiana	Rw4G022860 Rw4G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	2 cut(s)	434, 525
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	64, 317
AgsI	TTSAA	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	4 cut(s)	26, 244, 491, 515
AluI	AGCT	4 cut(s)	26, 244, 491, 515
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	2 cut(s)	198, 324
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	2 cut(s)	434, 525
ArsI	GACNNNNNNTTYG	2 cut(s)	342, 374
AsuHPI	GGTGA	2 cut(s)	380, 494
AsuII	TTCGAA	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	466
BciT130I	CCWGG	1 cut(s)	50
BclI	TGATCA	1 cut(s)	168
BfaI	CTAG	2 cut(s)	191, 501
BfmI	CTRYAG	2 cut(s)	36, 204
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	3 cut(s)	224, 391, 513
BpiI	GAAGAC	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
Bpu14I	TTCGAA	1 cut(s)	221
BpuEI	CTTGAG	2 cut(s)	142, 323
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	160
Bse3DI	GCAATG	2 cut(s)	30, 327
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	504
BseMI	GCAATG	2 cut(s)	30, 327
BseMII	CTCAG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	478
BsgI	GTGCAG	2 cut(s)	411, 490
BshFI	GGCC	2 cut(s)	200, 326
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	200, 326
Bsp119I	TTCGAA	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	168, 334, 454
BspANI	GGCC	2 cut(s)	200, 326
BspCNI	CTCAG	1 cut(s)	198
BspPI	GGATC	1 cut(s)	449
BspT104I	TTCGAA	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	30, 327
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	168, 334, 454
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	423
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	28, 242, 424
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	504
BstKTI	GATC	3 cut(s)	171, 337, 457
BstMBI	GATC	3 cut(s)	168, 334, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	2 cut(s)	36, 204
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	1 cut(s)	239
BsuRI	GGCC	2 cut(s)	200, 326
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	504
Cac8I	GCNNGC	3 cut(s)	28, 242, 424
Csp6I	GTAC	2 cut(s)	63, 316
CviAII	CATG	2 cut(s)	419, 423
CviQI	GTAC	2 cut(s)	63, 316
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	3 cut(s)	170, 336, 456
DpnII	GATC	3 cut(s)	168, 334, 454
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	424
FaeI	CATG	2 cut(s)	422, 426
FaiI	YATR	7 cut(s)	206, 375, 410, 420, 424, 512, 541
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	418, 422
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	2 cut(s)	191, 501
GluI	GCNGC	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	200, 326
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	2 cut(s)	422, 426
HinfI	GANTC	2 cut(s)	124, 310
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	2 cut(s)	380, 494
Hpy188I	TCNGA	2 cut(s)	57, 309
Hpy188III	TCNNGA	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	191, 349
HpyCH4IV	ACGT	2 cut(s)	117, 388
HpyCH4V	TGCA	7 cut(s)	30, 215, 293, 380, 392, 422, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	2 cut(s)	117, 388
Hsp92II	CATG	2 cut(s)	422, 426
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	168, 334, 454
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	3 cut(s)	224, 391, 513
MaeI	CTAG	2 cut(s)	191, 501
MaeII	ACGT	2 cut(s)	117, 388
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	3 cut(s)	170, 336, 456
MboI	GATC	3 cut(s)	168, 334, 454
MboII	GAAGA	6 cut(s)	3, 6, 210, 244, 298, 440
MluCI	AATT	5 cut(s)	143, 294, 434, 485, 525
MlyI	GAGTC	2 cut(s)	133, 304
MmeI	TCCRAC	2 cut(s)	132, 332
MnlI	CCTC	7 cut(s)	28, 82, 85, 188, 190, 316, 433
Mph1103I	ATGCAT	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	544
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	3 cut(s)	168, 334, 454
NlaIII	CATG	2 cut(s)	422, 426
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	1 cut(s)	426
NspV	TTCGAA	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PctI	GAATGC	1 cut(s)	295
PflFI	GACNNNGTC	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	493
PleI	GAGTC	2 cut(s)	132, 304
PpsI	GAGTC	2 cut(s)	132, 304
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PsyI	GACNNNGTC	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	64, 317
RsaNI	GTAC	2 cut(s)	63, 316
RseI	CAYNNNNRTG	1 cut(s)	544
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	3 cut(s)	168, 334, 454
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	2 cut(s)	133, 304
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	9 cut(s)	28, 120, 246, 360, 365, 391, 454, 493, 517
SfaNI	GCATC	3 cut(s)	224, 391, 513
SfcI	CTRYAG	2 cut(s)	36, 204
SfuI	TTCGAA	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	544
SmlI	CTYRAG	2 cut(s)	121, 338
SmoI	CTYRAG	2 cut(s)	121, 338
SphI	GCATGC	1 cut(s)	426
Sse9I	AATT	5 cut(s)	143, 294, 434, 485, 525
SspMI	CTAG	2 cut(s)	191, 501
StyD4I	CCNGG	1 cut(s)	48
TaiI	ACGT	2 cut(s)	120, 391
TaqI	TCGA	2 cut(s)	221, 438
TasI	AATT	5 cut(s)	143, 294, 434, 485, 525
TatI	WGTACW	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	303
Tth111I	GACNNNGTC	1 cut(s)	303
XapI	RAATTY	2 cut(s)	434, 525
XceI	RCATGY	1 cut(s)	426
XspI	CTAG	2 cut(s)	191, 501
ZrmI	AGTACT	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.