Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005409

Physical Location & Seq

Genomic Coordinates Forward (+)

54057222 .. 54057770

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG283200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTTTCTTCTTCTCCCTCAGTAGCTTGCATCGCTGTAATGTCTTTCATGGTTCTGATGAGCACTACTCCCTCCTCTGCTTTTATCCTAAACAAAGATATTTGCTCCAACACCAAGGTCTTGAGTCGCTCTTTTTGTTCGAAATTTCTGGGTTCTAATCCGGTTGTGATCAAGTCCCTCCTTCTCAGCCTCGCTGAGGCCACTATGGATGTCGCATCTTCGAACGCTACAAAGACCAGCCAGCTGATAATCAAGTGGCAAAACCAAACAGACGATCCTCAACTGAAGAATGCAATTAGTCTATGTCTGAGGCCGTACAGTGAAGCCATTACTGATCTCAAGGAAGCAAAAGAGAAGGTCAGGTCTGGGGACTATGTTGCACTACAACGTGCAGTAGTTGATGCTTCTGTAAAGTTTCATGCATGCGAGGAGAAATTCGAGGACACGCCACCTGATCCATCGCCATTGTGCAGTACTAGTGGTGAATTAGCTGCCATCTCTAGCATTCTTATAGCTGTTTCTGAGTTTCTGGTGAAATCATATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

182

Amino Acids

19.64

Weight (kDa)

6.57

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	32 - 172	1.3e-13	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48020 AT3G17220
fragaria_vesca	FvH4_4g20490 FvH4_4g20520 FvH4_4g20820
malus_domestica	MD16G1147400.v1.1
pyrus_communis	pycom16g12580
rosa_chinensis	RchiOBHm_Chr4g0425971
rosa_laevigata	RLG00000007305 RLG00000007327
rosa_multiflora	Rmu_co8326215.1_g000001 Rmu_sc0000730.1_g000043 Rmu_sc0002091.1_g000005 Rmu_sc0007871.1_g000003 Rmu_ssc0000281.1_g000022
rosa_roxburghii	Rroxscaffold_5G00367980 Rroxscaffold_5G00368310
rosa_rugosa	Rorug04G0209900
rosa_samantha	Rh4AG264700 Rh4AG267000 Rh4BG270600 Rh4BG272900 Rh4CG283200 Rh4CG286700 Rh4CG287000 Rh4DG267200 Rh4DG269500
rosa_wichuraiana	Rw4G022860 Rw4G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	269, 449
AcsI	RAATTY	2 cut(s)	143, 434
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	317, 475
AfiI	CCNNNNNNNGG	1 cut(s)	196
AhlI	ACTAGT	1 cut(s)	476
AluBI	AGCT	4 cut(s)	26, 244, 491, 515
AluI	AGCT	4 cut(s)	26, 244, 491, 515
Alw21I	GWGCWC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	269, 449
AoxI	GGCC	2 cut(s)	198, 311
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	2 cut(s)	143, 434
AsuHPI	GGTGA	2 cut(s)	494, 544
AsuII	TTCGAA	2 cut(s)	140, 221
Bbv12I	GWGCWC	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	2 cut(s)	466, 503
BceAI	ACGGC	1 cut(s)	298
BclI	TGATCA	1 cut(s)	168
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	2 cut(s)	477, 501
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
BmcAI	AGTACT	1 cut(s)	475
BmsI	GCATC	3 cut(s)	39, 224, 391
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	2 cut(s)	140, 221
BpuEI	CTTGAG	2 cut(s)	142, 323
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	5 cut(s)	33, 186, 199, 299, 513
BseRI	GAGGAG	2 cut(s)	64, 443
BseXI	GCAGC	1 cut(s)	478
BsgI	GTGCAG	2 cut(s)	411, 490
BshFI	GGCC	2 cut(s)	200, 313
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	160, 383
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	160, 383
BsmI	GAATGC	2 cut(s)	295, 504
BsnI	GGCC	2 cut(s)	200, 313
Bsp119I	TTCGAA	2 cut(s)	140, 221
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	168, 274, 334, 454
BspANI	GGCC	2 cut(s)	200, 313
BspCNI	CTCAG	5 cut(s)	32, 187, 198, 300, 514
BspPI	GGATC	2 cut(s)	269, 449
BspT104I	TTCGAA	2 cut(s)	140, 221
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	4 cut(s)	168, 274, 334, 454
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	320
BstBI	TTCGAA	2 cut(s)	140, 221
BstC8I	GCNNGC	3 cut(s)	28, 242, 424
BstDEI	CTNAG	5 cut(s)	19, 185, 195, 308, 522
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	4 cut(s)	171, 277, 337, 457
BstMBI	GATC	4 cut(s)	168, 274, 334, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	200, 313
BtgZI	GCGATG	2 cut(s)	16, 444
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	3 cut(s)	28, 242, 424
Csp6I	GTAC	2 cut(s)	316, 474
CviAII	CATG	3 cut(s)	49, 419, 423
CviJI	RGCY	9 cut(s)	26, 189, 200, 240, 244, 313, 326, 491, 515
CviKI_1	RGCY	9 cut(s)	26, 189, 200, 240, 244, 313, 326, 491, 515
CviQI	GTAC	2 cut(s)	316, 474
DdeI	CTNAG	5 cut(s)	19, 185, 195, 308, 522
DpnI	GATC	4 cut(s)	170, 276, 336, 456
DpnII	GATC	4 cut(s)	168, 274, 334, 454
Eco130I	CCWWGG	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	52, 422, 426
FaiI	YATR	9 cut(s)	50, 206, 304, 375, 420, 424, 512, 541, 543
FaqI	GGGAC	2 cut(s)	160, 383
FatI	CATG	3 cut(s)	48, 418, 422
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	2 cut(s)	477, 501
GluI	GCNGC	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	200, 313
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	3 cut(s)	52, 422, 426
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	2 cut(s)	494, 544
Hpy188I	TCNGA	3 cut(s)	57, 309, 523
Hpy188III	TCNNGA	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	191, 349
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	6 cut(s)	30, 293, 380, 392, 422, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	5 cut(s)	19, 185, 195, 308, 522
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	3 cut(s)	52, 422, 426
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	4 cut(s)	168, 274, 334, 454
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	8 cut(s)	134, 174, 250, 254, 346, 351, 465, 515
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	3 cut(s)	39, 224, 391
MaeI	CTAG	2 cut(s)	477, 501
MaeII	ACGT	1 cut(s)	388
MalI	GATC	4 cut(s)	170, 276, 336, 456
MboI	GATC	4 cut(s)	168, 274, 334, 454
MboII	GAAGA	3 cut(s)	3, 210, 298
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	4 cut(s)	143, 294, 434, 485
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	132
Mph1103I	ATGCAT	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	544
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	1 cut(s)	161
Mva1269I	GAATGC	2 cut(s)	295, 504
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	4 cut(s)	168, 274, 334, 454
NlaIII	CATG	3 cut(s)	52, 422, 426
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	1 cut(s)	426
NspV	TTCGAA	2 cut(s)	140, 221
PaeI	GCATGC	1 cut(s)	426
PctI	GAATGC	2 cut(s)	295, 504
PkrI	GCNGC	1 cut(s)	493
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	317, 475
RsaNI	GTAC	2 cut(s)	316, 474
RseI	CAYNNNNRTG	1 cut(s)	544
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	4 cut(s)	168, 274, 334, 454
ScaI	AGTACT	1 cut(s)	475
SchI	GAGTC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	9 cut(s)	28, 120, 246, 360, 365, 391, 454, 493, 517
SfaNI	GCATC	3 cut(s)	39, 224, 391
SfuI	TTCGAA	2 cut(s)	140, 221
SmiMI	CAYNNNNRTG	1 cut(s)	544
SmlI	CTYRAG	2 cut(s)	121, 338
SmoI	CTYRAG	2 cut(s)	121, 338
SpeI	ACTAGT	1 cut(s)	476
SphI	GCATGC	1 cut(s)	426
Sse9I	AATT	4 cut(s)	143, 294, 434, 485
SspMI	CTAG	2 cut(s)	477, 501
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	3 cut(s)	140, 221, 438
TasI	AATT	4 cut(s)	143, 294, 434, 485
TatI	WGTACW	1 cut(s)	473
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	37, 407
TspRI	CASTG	1 cut(s)	325
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	2 cut(s)	143, 434
XceI	RCATGY	1 cut(s)	426
XspI	CTAG	2 cut(s)	477, 501
ZrmI	AGTACT	1 cut(s)	475
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.