Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005409

Physical Location & Seq

Genomic Coordinates Forward (+)

58072763 .. 58076682

Gene Structure 3920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG264700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTTCTGATGATCACTACTCCCTCCTCTGCTTTTATCCTAAACAAAGATATTTGCTCCAACACCAAGGTCTTGAGTCGCTCTTTTTGTTCAAAATTTCTGGGTTCTAATCCGGTTGTGATCAAGTCCCTCCTTCTCAGCCTCGCTGAGGCCACTATGGATGTAGCATCTTCGAACGCTACAAAGACCAGCCAGCTGATAATCAAGTGGCAAAACCAAACAGACAATCCTCAACTGAAGAATGCAATTAGTCTATGTCCGAGGCCGTACAGTGAAGCCATTACTGATCTCAAGGAAGCAAAAGAGAAGGTCAGGTCTGGGGACTATGTTGCACTACAACGTGCAGTAGTTGATGCTTCTATAAAGTTTCATGCATGTGAGGAGAAATTCGAGGACACGCCACCTGATCCATCGCCATTGTGCAGTACCAGTGGTGAATTAGCTGCCATCTCTAGCATTCTTATAGCTGTTTCTGAGTTTCTGGCCGTATTGCTGCTCTCAAGGATCCCAAAGAAGGTCAGGTCTGGTAACTATAATGTAAACCTTGCAGCAGTTGAGGCCTCCACAAAGTTTAATGCGTGTGAAGACCGATTTGATGAGGACATATCTGATCCATCACCATTAGCAAGTGATAAAAACGATATAGCCACTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

218

Amino Acids

23.63

Weight (kDa)

5.31

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	16 - 156	2.3e-12	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48020 AT3G17220
fragaria_vesca	FvH4_4g20490 FvH4_4g20520 FvH4_4g20820
malus_domestica	MD16G1147400.v1.1
pyrus_communis	pycom16g12580
rosa_chinensis	RchiOBHm_Chr4g0425971
rosa_laevigata	RLG00000007305 RLG00000007327
rosa_multiflora	Rmu_co8326215.1_g000001 Rmu_sc0000730.1_g000043 Rmu_sc0002091.1_g000005 Rmu_sc0007871.1_g000003 Rmu_ssc0000281.1_g000022
rosa_roxburghii	Rroxscaffold_5G00367980 Rroxscaffold_5G00368310
rosa_rugosa	Rorug04G0209900
rosa_samantha	Rh4AG264700 Rh4AG267000 Rh4BG270600 Rh4BG272900 Rh4CG283200 Rh4CG286700 Rh4CG287000 Rh4DG267200 Rh4DG269500
rosa_wichuraiana	Rw4G022860 Rw4G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	401, 499, 512, 605
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	2 cut(s)	95, 386
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	2 cut(s)	269, 427
AfiI	CCNNNNNNNGG	2 cut(s)	148, 514
AgsI	TTSAA	1 cut(s)	93
AluBI	AGCT	3 cut(s)	196, 443, 467
AluI	AGCT	3 cut(s)	196, 443, 467
AlwI	GGATC	4 cut(s)	401, 499, 512, 605
AoxI	GGCC	4 cut(s)	150, 263, 483, 558
ApeKI	GCWGC	3 cut(s)	443, 493, 548
ApoI	RAATTY	2 cut(s)	95, 386
AsuHPI	GGTGA	2 cut(s)	446, 609
AsuII	TTCGAA	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	430, 480, 560
BccI	CCATC	3 cut(s)	418, 455, 622
BceAI	ACGGC	2 cut(s)	250, 470
BclI	TGATCA	2 cut(s)	12, 120
BfaI	CTAG	1 cut(s)	453
BisI	GCNGC	3 cut(s)	444, 494, 549
BlsI	GCNGC	3 cut(s)	445, 495, 550
BmiI	GGNNCC	1 cut(s)	506
BmsI	GCATC	2 cut(s)	176, 343
BpiI	GAAGAC	1 cut(s)	591
Bpu10I	CCTNAGC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	3 cut(s)	94, 275, 484
BsaJI	CCNNGG	2 cut(s)	66, 260
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 514
Bse1I	ACTGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	66, 260
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	148, 514
BseMII	CTCAG	3 cut(s)	138, 151, 465
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	2 cut(s)	16, 395
BseXI	GCAGC	3 cut(s)	430, 480, 560
BsgI	GTGCAG	2 cut(s)	363, 442
BshFI	GGCC	4 cut(s)	152, 265, 485, 560
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	2 cut(s)	112, 335
BslI	CCNNNNNNNGG	2 cut(s)	148, 514
BsmFI	GGGAC	2 cut(s)	112, 335
BsmI	GAATGC	2 cut(s)	247, 456
BsnI	GGCC	4 cut(s)	152, 265, 485, 560
Bsp119I	TTCGAA	1 cut(s)	173
Bsp143I	GATC	6 cut(s)	12, 120, 286, 406, 504, 610
BspANI	GGCC	4 cut(s)	152, 265, 485, 560
BspCNI	CTCAG	3 cut(s)	139, 150, 466
BspLI	GGNNCC	1 cut(s)	506
BspPI	GGATC	4 cut(s)	401, 499, 512, 605
BspT104I	TTCGAA	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	429
BssECI	CCNNGG	2 cut(s)	66, 260
BssMI	GATC	6 cut(s)	12, 120, 286, 406, 504, 610
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	137, 147, 474
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	6 cut(s)	15, 123, 289, 409, 507, 613
BstMBI	GATC	6 cut(s)	12, 120, 286, 406, 504, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	557
BstNSI	RCATGY	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	430, 480, 560
BstV2I	GAAGAC	1 cut(s)	591
BstX2I	RGATCY	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	504
BsuRI	GGCC	4 cut(s)	152, 265, 485, 560
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	277, 436
Cac8I	GCNNGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	268, 426
CviAII	CATG	2 cut(s)	371, 375
CviQI	GTAC	2 cut(s)	268, 426
DdeI	CTNAG	3 cut(s)	137, 147, 474
DpnI	GATC	6 cut(s)	14, 122, 288, 408, 506, 612
DpnII	GATC	6 cut(s)	12, 120, 286, 406, 504, 610
EaeI	YGGCCR	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	374, 378
FaqI	GGGAC	2 cut(s)	112, 335
FatI	CATG	2 cut(s)	370, 374
FbaI	TGATCA	2 cut(s)	12, 120
Fnu4HI	GCNGC	3 cut(s)	444, 494, 549
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	444, 494, 549
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	3 cut(s)	444, 494, 549
HaeIII	GGCC	4 cut(s)	152, 265, 485, 560
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	2 cut(s)	374, 378
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	446, 609
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	4 cut(s)	9, 261, 475, 610
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	541
HpyAV	CCTTC	3 cut(s)	143, 301, 508
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	6 cut(s)	245, 332, 344, 374, 423, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	557
HpyF3I	CTNAG	3 cut(s)	137, 147, 474
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	2 cut(s)	374, 378
Ksp22I	TGATCA	2 cut(s)	12, 120
Kzo9I	GATC	6 cut(s)	12, 120, 286, 406, 504, 610
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	3 cut(s)	430, 480, 560
LweI	GCATC	2 cut(s)	176, 343
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	6 cut(s)	14, 122, 288, 408, 506, 612
MboI	GATC	6 cut(s)	12, 120, 286, 406, 504, 610
MboII	GAAGA	3 cut(s)	162, 250, 596
MflI	RGATCY	1 cut(s)	504
MluCI	AATT	4 cut(s)	95, 246, 386, 437
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	376
MseI	TTAA	1 cut(s)	573
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	1 cut(s)	113
Mva1269I	GAATGC	2 cut(s)	247, 456
MwoI	GCNNNNNNNGC	1 cut(s)	557
NdeII	GATC	6 cut(s)	12, 120, 286, 406, 504, 610
NlaIII	CATG	2 cut(s)	374, 378
NlaIV	GGNNCC	1 cut(s)	506
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	560
PctI	GAATGC	2 cut(s)	247, 456
PkrI	GCNGC	3 cut(s)	445, 495, 550
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	504
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	269, 427
RsaNI	GTAC	2 cut(s)	268, 426
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	3 cut(s)	444, 494, 549
Sau3AI	GATC	6 cut(s)	12, 120, 286, 406, 504, 610
SchI	GAGTC	1 cut(s)	85
SfaNI	GCATC	2 cut(s)	176, 343
SfuI	TTCGAA	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	3 cut(s)	73, 290, 499
SmoI	CTYRAG	3 cut(s)	73, 290, 499
Sse9I	AATT	4 cut(s)	95, 246, 386, 437
SseBI	AGGCCT	1 cut(s)	560
SspMI	CTAG	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	173, 390
TaqII	GACCGA	1 cut(s)	603
TasI	AATT	4 cut(s)	95, 246, 386, 437
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	2 cut(s)	277, 436
TseI	GCWGC	3 cut(s)	443, 493, 548
TspDTI	ATGAA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	277, 436
XagI	CCTNNNNNAGG	1 cut(s)	146
XapI	RAATTY	2 cut(s)	95, 386
XceI	RCATGY	1 cut(s)	378
XspI	CTAG	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.