Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005409

Physical Location & Seq

Genomic Coordinates Forward (+)

11512529 .. 11512951

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1147400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAACCCGTCATTCTGTTCTCTGCTCCTAAGTTCGAATCCCCGTGTGACTGAGGCACTTCTTCGCAGCCTGGCCGGTGTCACCGTAGATTTGGGATATTCCAATACTACAGCCACTAGAGATCACATAGTAAAGTGGAAGAACCAGGCGGGCAATCCGGCGTTGCGGCTGAGGTACACATCTTGTGCCGGAAATTACAACGAGGCCGTTGCAAATTTCAAGGAGGCCAAGGAGAAAGCGAAGGTTGGTGACTACAATGGTGTGAGAAATGCAGCAGCTGGTGCCTTGGGAGAGTTCAATGGGTGTTCAGAGAACTTTAAGCAGCCACCATCTGAACCAACAAGTCTCTGGCAAGATACTAGGGATTTGCTAAATCTTTCTAGTATTATATTAATTGTTTCTAATACTCTGCTTCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

141

Amino Acids

15.23

Weight (kDa)

8.84

Isoelectric Point (pI)

27.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	2 - 131	1.1e-10	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48020 AT3G17220
fragaria_vesca	FvH4_4g20490 FvH4_4g20520 FvH4_4g20820
malus_domestica	MD16G1147400.v1.1
pyrus_communis	pycom16g12580
rosa_chinensis	RchiOBHm_Chr4g0425971
rosa_laevigata	RLG00000007305 RLG00000007327
rosa_multiflora	Rmu_co8326215.1_g000001 Rmu_sc0000730.1_g000043 Rmu_sc0002091.1_g000005 Rmu_sc0007871.1_g000003 Rmu_ssc0000281.1_g000022
rosa_roxburghii	Rroxscaffold_5G00367980 Rroxscaffold_5G00368310
rosa_rugosa	Rorug04G0209900
rosa_samantha	Rh4AG264700 Rh4AG267000 Rh4BG270600 Rh4BG272900 Rh4CG283200 Rh4CG286700 Rh4CG287000 Rh4DG267200 Rh4DG269500
rosa_wichuraiana	Rw4G022860 Rw4G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AciI	CCGC	2 cut(s)	149, 166
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	214
AfaI	GTAC	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	220, 298
AjnI	CCWGG	2 cut(s)	69, 144
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	350
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	3 cut(s)	72, 204, 225
ApeKI	GCWGC	4 cut(s)	66, 272, 275, 322
ApoI	RAATTY	1 cut(s)	214
AseI	ATTAAT	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	73, 260
AsuII	TTCGAA	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	281
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	4 cut(s)	78, 284, 287, 334
BccI	CCATC	1 cut(s)	337
BceAI	ACGGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	2 cut(s)	71, 146
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	3 cut(s)	117, 360, 381
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	5 cut(s)	67, 167, 273, 276, 323
BlsI	GCNGC	5 cut(s)	68, 168, 274, 277, 324
Bme1390I	CCNGG	2 cut(s)	71, 146
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	2 cut(s)	71, 146
Bpu10I	CCTNAGC	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	228, 285
Bse118I	RCCGGY	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	71, 146
BseDI	CCNNGG	2 cut(s)	228, 285
BseMII	CTCAG	2 cut(s)	42, 161
BseXI	GCAGC	4 cut(s)	78, 284, 287, 334
BshFI	GGCC	3 cut(s)	74, 206, 227
BshNI	GGYRCC	1 cut(s)	281
BsiSI	CCGG	3 cut(s)	75, 158, 189
BsmAI	GTCTC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	74, 206, 227
Bsp119I	TTCGAA	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	2 cut(s)	149, 166
BspANI	GGCC	3 cut(s)	74, 206, 227
BspCNI	CTCAG	2 cut(s)	43, 162
BspLI	GGNNCC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	228, 285
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	2 cut(s)	228, 285
Bst2UI	CCWGG	2 cut(s)	71, 146
Bst4CI	ACNGT	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	3 cut(s)	29, 51, 170
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	2 cut(s)	71, 146
BstSCI	CCNGG	2 cut(s)	69, 144
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	4 cut(s)	78, 284, 287, 334
BsuRI	GGCC	3 cut(s)	74, 206, 227
Cac8I	GCNNGC	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	8 cut(s)	69, 74, 113, 169, 206, 227, 278, 325
CviKI_1	RGCY	8 cut(s)	69, 74, 113, 169, 206, 227, 278, 325
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	29, 51, 170
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	72
Eco130I	CCWWGG	2 cut(s)	228, 285
EcoRII	CCWGG	2 cut(s)	69, 144
EcoT14I	CCWWGG	2 cut(s)	228, 285
ErhI	CCWWGG	2 cut(s)	228, 285
FaiI	YATR	2 cut(s)	128, 389
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	5 cut(s)	67, 167, 273, 276, 323
Fsp4HI	GCNGC	5 cut(s)	67, 167, 273, 276, 323
FspBI	CTAG	3 cut(s)	117, 360, 381
GluI	GCNGC	5 cut(s)	67, 167, 273, 276, 323
HaeIII	GGCC	3 cut(s)	74, 206, 227
HapII	CCGG	3 cut(s)	75, 158, 189
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	3 cut(s)	75, 158, 189
HphI	GGTGA	2 cut(s)	73, 260
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	310, 334
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	212, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	3 cut(s)	29, 51, 170
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	9 cut(s)	56, 83, 88, 131, 158, 171, 202, 264, 334
Lsp1109I	GCAGC	4 cut(s)	78, 284, 287, 334
MaeI	CTAG	3 cut(s)	117, 360, 381
MaeIII	GTNAC	3 cut(s)	46, 79, 248
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	53, 151
MluCI	AATT	3 cut(s)	193, 214, 393
MnlI	CCTC	4 cut(s)	46, 165, 196, 217
MseI	TTAA	2 cut(s)	318, 392
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	3 cut(s)	75, 158, 189
MspR9I	CCNGG	2 cut(s)	71, 146
MvaI	CCWGG	2 cut(s)	71, 146
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	3 cut(s)	46, 79, 248
NspV	TTCGAA	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	5 cut(s)	68, 168, 274, 277, 324
PshBI	ATTAAT	1 cut(s)	392
Psp6I	CCWGG	2 cut(s)	69, 144
PspGI	CCWGG	2 cut(s)	69, 144
PspN4I	GGNNCC	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	318, 392
SatI	GCNGC	5 cut(s)	67, 167, 273, 276, 323
Sau3AI	GATC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	71, 146
SetI	ASST	3 cut(s)	176, 246, 280
SfcI	CTRYAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	35
Sse9I	AATT	3 cut(s)	193, 214, 393
SsiI	CCGC	2 cut(s)	149, 166
SspMI	CTAG	3 cut(s)	117, 360, 381
StyD4I	CCNGG	2 cut(s)	69, 144
StyI	CCWWGG	2 cut(s)	228, 285
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	35
TasI	AATT	3 cut(s)	193, 214, 393
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	318, 392
Tru9I	TTAA	2 cut(s)	318, 392
TseFI	GTSAC	3 cut(s)	46, 79, 248
TseI	GCWGC	4 cut(s)	66, 272, 275, 322
Tsp45I	GTSAC	3 cut(s)	46, 79, 248
TspDTI	ATGAA	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	392
XapI	RAATTY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	345
XspI	CTAG	3 cut(s)	117, 360, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.