Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005409

Physical Location & Seq

Genomic Coordinates Reverse (-)

5883328 .. 5884191

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCAGCATACCTGACGAACAGAGTTTTAATGTCTTCTCTGATGTTTTTTGTAATGACTGGTTCTTTGAACGCACAAGTGGCAGACATAAAAGCGATATGTGGAAAAGCGAAAAACCAATCCTTCTGTACGAGCTACATGAAATCCAACCCAAAGACCTCAGGTGCTGATCTTCAAACGCTTGCAAATATCACATTTGGTTCTGCACAAACAAGTGCATCAGAAGGTTTCAGGAAAATTCAATCTCTAGTCAAGACAGCAACCAACCCCACTATGAAGAAAGCATACACCTCATGTGTACAACATTATAAGAGTGCAATAAGCAGTCTCAATGATGCTAAGCAGAGCCTGGCGTCAGGCGATGGCAAAGGGTTGAACATTAAGGTTTCAGCAGCTATGGAAGGACCTTCAACATGTGAACAAGACATGGCGGATTTCAAAGTTGATCCTTCAGCTGTGAAGAACAGTGGTGATTTTCAGAATATTTGTGGCATTGTACTTGTCATCTCAAACATGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

173

Amino Acids

18.37

Weight (kDa)

9.11

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	29 - 169	1.2e-20	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48020 AT3G17220
fragaria_vesca	FvH4_4g20490 FvH4_4g20520 FvH4_4g20820
malus_domestica	MD16G1147400.v1.1
pyrus_communis	pycom16g12580
rosa_chinensis	RchiOBHm_Chr4g0425971
rosa_laevigata	RLG00000007305 RLG00000007327
rosa_multiflora	Rmu_co8326215.1_g000001 Rmu_sc0000730.1_g000043 Rmu_sc0002091.1_g000005 Rmu_sc0007871.1_g000003 Rmu_ssc0000281.1_g000022
rosa_roxburghii	Rroxscaffold_5G00367980 Rroxscaffold_5G00368310
rosa_rugosa	Rorug04G0209900
rosa_samantha	Rh4AG264700 Rh4AG267000 Rh4BG270600 Rh4BG272900 Rh4CG283200 Rh4CG286700 Rh4CG287000 Rh4DG267200 Rh4DG269500
rosa_wichuraiana	Rw4G022860 Rw4G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	3 cut(s)	130, 300, 498
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	6 cut(s)	70, 176, 242, 376, 411, 439
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	3 cut(s)	135, 395, 455
AluI	AGCT	3 cut(s)	135, 395, 455
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	440
AlwNI	CAGNNNCTG	2 cut(s)	167, 349
ApeKI	GCWGC	2 cut(s)	5, 392
ApoI	RAATTY	1 cut(s)	237
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	404
AxyI	CCTNAGG	1 cut(s)	160
BarI	GAAGNNNNNNTAC	2 cut(s)	269, 301
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	17, 404
BccI	CCATC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	2 cut(s)	6, 393
BlpI	GCTNAGC	1 cut(s)	339
BlsI	GCNGC	2 cut(s)	7, 394
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	227, 325
BpiI	GAAGAC	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	17, 404
BsgI	GTGCAG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	332
Bsp1407I	TGTACA	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	169, 445
Bsp1720I	GCTNAGC	1 cut(s)	339
BspACI	CCGC	1 cut(s)	431
BspCNI	CTCAG	1 cut(s)	173
BspPI	GGATC	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	2 cut(s)	169, 445
BssNI	GRCGYC	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	467
BstACI	GRCGYC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	160, 339
BstKTI	GATC	2 cut(s)	172, 448
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	169, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	17, 404
BstV2I	GAAGAC	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	160
BtgZI	GCGATG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	2 cut(s)	167, 349
Cfr13I	GGNCC	1 cut(s)	404
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	129, 299, 497
CviAII	CATG	5 cut(s)	139, 294, 414, 427, 514
CviJI	RGCY	4 cut(s)	135, 348, 395, 455
CviKI_1	RGCY	4 cut(s)	135, 348, 395, 455
CviQI	GTAC	3 cut(s)	129, 299, 497
DdeI	CTNAG	2 cut(s)	160, 339
DpnI	GATC	2 cut(s)	171, 447
DpnII	GATC	2 cut(s)	169, 445
EciI	GGCGGA	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	348
FaeI	CATG	5 cut(s)	142, 297, 417, 430, 517
FatI	CATG	5 cut(s)	138, 293, 413, 426, 513
Fnu4HI	GCNGC	2 cut(s)	6, 393
Fsp4HI	GCNGC	2 cut(s)	6, 393
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	2 cut(s)	6, 393
HgaI	GACGC	1 cut(s)	342
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	5 cut(s)	142, 297, 417, 430, 517
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	2 cut(s)	299, 419
Hpy188I	TCNGA	3 cut(s)	42, 223, 480
Hpy188III	TCNNGA	2 cut(s)	232, 253
Hpy8I	GTNNAC	2 cut(s)	299, 419
HpyAV	CCTTC	5 cut(s)	133, 218, 395, 417, 459
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	4 cut(s)	185, 206, 218, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	160, 339
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	5 cut(s)	142, 297, 417, 430, 517
Kzo9I	GATC	2 cut(s)	169, 445
LpnPI	CCDG	7 cut(s)	26, 45, 147, 217, 335, 342, 362
Lsp1109I	GCAGC	2 cut(s)	17, 404
LweI	GCATC	2 cut(s)	227, 325
MaeI	CTAG	1 cut(s)	248
MalI	GATC	2 cut(s)	171, 447
MboI	GATC	2 cut(s)	169, 445
MboII	GAAGA	4 cut(s)	27, 164, 289, 472
MluCI	AATT	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	2 cut(s)	169, 301
MseI	TTAA	2 cut(s)	29, 381
MspA1I	CMGCKG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	2 cut(s)	169, 445
NlaIII	CATG	5 cut(s)	142, 297, 417, 430, 517
NspI	RCATGY	1 cut(s)	417
PciI	ACATGT	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	7, 394
PpuMI	RGGWCCY	1 cut(s)	404
PscI	ACATGT	1 cut(s)	413
PsiI	TTATAA	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	404
PspPPI	RGGWCCY	1 cut(s)	404
PstNI	CAGNNNCTG	2 cut(s)	167, 349
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	3 cut(s)	130, 300, 498
RsaNI	GTAC	3 cut(s)	129, 299, 497
SaqAI	TTAA	2 cut(s)	29, 381
SatI	GCNGC	2 cut(s)	6, 393
Sau3AI	GATC	2 cut(s)	169, 445
Sau96I	GGNCC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	350
SfaNI	GCATC	2 cut(s)	227, 325
SinI	GGWCC	1 cut(s)	404
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	1 cut(s)	431
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	467
TasI	AATT	1 cut(s)	237
TatI	WGTACW	2 cut(s)	298, 496
Tru1I	TTAA	2 cut(s)	29, 381
Tru9I	TTAA	2 cut(s)	29, 381
TscAI	CASTG	1 cut(s)	472
TseI	GCWGC	2 cut(s)	5, 392
TspDTI	ATGAA	2 cut(s)	155, 290
TspRI	CASTG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	417
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.