Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005409

Physical Location & Seq

Genomic Coordinates Forward (+)

23725898 .. 23727165

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTTTCCTCTTCTTCTTCCTCCTCAGTTGCTTTCTTTGCTGCAATGTCTTTCATGGTTCTTTTGAGTACTACTCCCTCCTCTGCTTTTGACCTAAACAAGGATATTTGCTCCAACTTCAATGTCTTGAGTCGCTCCTTTTGTAAAGACTTTCTTGGTTCTAATCCGGTTGTGATCAAGTCCCTCCTTCTCGGCCTTGCCGAGGGCACTATAGATGTCGCATTTTCTAATGCCACAAAGACCAGACAGCAGATTCCCAAGTGGCAAAAACTAGCAGACGACCCTCAAGTGAAGTGTGCAATTAGTAAATGTCTGAGGCCTTACAGTGAAGCCATTGCTGCTCTCAAGGAAGCAAAAGAGAAGGTCAGGTCTGGGGACTATGGTGCACTGCAAAATTCAGCAGCTAATGCTGCTGCAGATTTTCATGTATGCGTGGAGCAACTTGAGGAAACACCACCTGATTCATCGCCATTGGAAAGTACTAGTGTTGACTTGTCTACTATCGCCAGCATCCTTTTAGCTGTTTTCGAGTTTCTGGGAAAATCATATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

185

Amino Acids

19.68

Weight (kDa)

5.17

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	34 - 174	9.2e-13	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48020 AT3G17220
fragaria_vesca	FvH4_4g20490 FvH4_4g20520 FvH4_4g20820
malus_domestica	MD16G1147400.v1.1
pyrus_communis	pycom16g12580
rosa_chinensis	RchiOBHm_Chr4g0425971
rosa_laevigata	RLG00000007305 RLG00000007327
rosa_multiflora	Rmu_co8326215.1_g000001 Rmu_sc0000730.1_g000043 Rmu_sc0002091.1_g000005 Rmu_sc0007871.1_g000003 Rmu_ssc0000281.1_g000022
rosa_roxburghii	Rroxscaffold_5G00367980 Rroxscaffold_5G00368310
rosa_rugosa	Rorug04G0209900
rosa_samantha	Rh4AG264700 Rh4AG267000 Rh4BG270600 Rh4BG272900 Rh4CG283200 Rh4CG286700 Rh4CG287000 Rh4DG267200 Rh4DG269500
rosa_wichuraiana	Rw4G022860 Rw4G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	394
AfaI	GTAC	2 cut(s)	70, 481
AfiI	CCNNNNNNNGG	2 cut(s)	100, 202
AgsI	TTSAA	1 cut(s)	121
AhlI	ACTAGT	1 cut(s)	482
AluBI	AGCT	2 cut(s)	404, 521
AluI	AGCT	2 cut(s)	404, 521
Alw21I	GWGCWC	1 cut(s)	388
Alw44I	GTGCAC	1 cut(s)	384
AoxI	GGCC	2 cut(s)	193, 317
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	5 cut(s)	41, 338, 401, 410, 413
ApoI	RAATTY	1 cut(s)	394
BaeGI	GKGCMC	2 cut(s)	209, 388
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	5 cut(s)	28, 325, 397, 400, 413
BclI	TGATCA	1 cut(s)	174
BcuI	ACTAGT	1 cut(s)	482
BfaI	CTAG	2 cut(s)	272, 483
BfmI	CTRYAG	2 cut(s)	210, 414
BisI	GCNGC	5 cut(s)	42, 339, 402, 411, 414
BlsI	GCNGC	5 cut(s)	43, 340, 403, 412, 415
BmcAI	AGTACT	2 cut(s)	70, 481
BmsI	GCATC	1 cut(s)	519
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpuEI	CTTGAG	4 cut(s)	148, 270, 329, 464
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 202
Bse3DI	GCAATG	2 cut(s)	51, 333
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	100, 202
BseMI	GCAATG	2 cut(s)	51, 333
BseMII	CTCAG	2 cut(s)	39, 305
BseRI	GAGGAG	2 cut(s)	13, 70
BseSI	GKGCMC	2 cut(s)	209, 388
BseXI	GCAGC	5 cut(s)	28, 325, 397, 400, 413
BshFI	GGCC	2 cut(s)	195, 319
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	166, 389
BslI	CCNNNNNNNGG	2 cut(s)	100, 202
BsmFI	GGGAC	2 cut(s)	166, 389
BsnI	GGCC	2 cut(s)	195, 319
Bsp1286I	GDGCHC	2 cut(s)	209, 388
Bsp143I	GATC	1 cut(s)	174
BspANI	GGCC	2 cut(s)	195, 319
BspCNI	CTCAG	2 cut(s)	38, 306
BspMAI	CTGCAG	1 cut(s)	418
BsrDI	GCAATG	2 cut(s)	51, 333
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	2 cut(s)	25, 314
BstENI	CCTNNNNNAGG	2 cut(s)	98, 200
BstF5I	GGATG	1 cut(s)	510
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 338, 407, 410
BstSFI	CTRYAG	2 cut(s)	210, 414
BstSLI	GKGCMC	2 cut(s)	209, 388
BstV1I	GCAGC	5 cut(s)	28, 325, 397, 400, 413
BsuRI	GGCC	2 cut(s)	195, 319
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	510
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	2 cut(s)	331, 386
Cac8I	GCNNGC	1 cut(s)	508
Csp6I	GTAC	2 cut(s)	69, 480
CviAII	CATG	2 cut(s)	55, 425
CviJI	RGCY	5 cut(s)	195, 319, 332, 404, 521
CviKI_1	RGCY	5 cut(s)	195, 319, 332, 404, 521
CviQI	GTAC	2 cut(s)	69, 480
DdeI	CTNAG	2 cut(s)	25, 314
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	319
EcoNI	CCTNNNNNAGG	2 cut(s)	98, 200
EcoT22I	ATGCAT	1 cut(s)	553
FaeI	CATG	2 cut(s)	58, 428
FaiI	YATR	8 cut(s)	56, 212, 381, 426, 430, 547, 549, 553
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	2 cut(s)	166, 389
FatI	CATG	2 cut(s)	54, 424
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	5 cut(s)	42, 339, 402, 411, 414
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	5 cut(s)	42, 339, 402, 411, 414
FspBI	CTAG	2 cut(s)	272, 483
GluI	GCNGC	5 cut(s)	42, 339, 402, 411, 414
HaeIII	GGCC	2 cut(s)	195, 319
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	2 cut(s)	58, 428
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	130, 253, 461
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	386, 490, 498
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	3 cut(s)	386, 490, 498
HpyAV	CCTTC	2 cut(s)	197, 355
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	6 cut(s)	44, 299, 386, 391, 416, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 338, 407, 410
HpyF3I	CTNAG	2 cut(s)	25, 314
Hsp92II	CATG	2 cut(s)	58, 428
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	3 cut(s)	116, 140, 436
LpnPI	CCDG	7 cut(s)	180, 256, 352, 357, 471, 520, 521
Lsp1109I	GCAGC	5 cut(s)	28, 325, 397, 400, 413
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	2 cut(s)	272, 483
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	3, 6, 9
MhlI	GDGCHC	2 cut(s)	209, 388
MluCI	AATT	2 cut(s)	300, 394
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	553
MspI	CCGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	4 cut(s)	38, 338, 407, 410
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	2 cut(s)	58, 428
NmeAIII	GCCGAG	2 cut(s)	171, 226
NsiI	ATGCAT	1 cut(s)	553
PceI	AGGCCT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	253, 461
PkrI	GCNGC	5 cut(s)	43, 340, 403, 412, 415
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	418
RsaI	GTAC	2 cut(s)	70, 481
RsaNI	GTAC	2 cut(s)	69, 480
SatI	GCNGC	5 cut(s)	42, 339, 402, 411, 414
Sau3AI	GATC	1 cut(s)	174
ScaI	AGTACT	2 cut(s)	70, 481
SchI	GAGTC	1 cut(s)	139
SduI	GDGCHC	2 cut(s)	209, 388
SetI	ASST	6 cut(s)	96, 366, 371, 406, 460, 523
SfaNI	GCATC	1 cut(s)	519
SfcI	CTRYAG	2 cut(s)	210, 414
SmlI	CTYRAG	4 cut(s)	127, 285, 344, 443
SmoI	CTYRAG	4 cut(s)	127, 285, 344, 443
SpeI	ACTAGT	1 cut(s)	482
Sse9I	AATT	2 cut(s)	300, 394
SseBI	AGGCCT	1 cut(s)	319
SspMI	CTAG	2 cut(s)	272, 483
StuI	AGGCCT	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	1 cut(s)	528
TasI	AATT	2 cut(s)	300, 394
TatI	WGTACW	2 cut(s)	68, 479
TfiI	GAWTC	2 cut(s)	253, 461
TscAI	CASTG	2 cut(s)	331, 393
TseI	GCWGC	5 cut(s)	41, 338, 401, 410, 413
TspDTI	ATGAA	3 cut(s)	43, 413, 453
TspRI	CASTG	2 cut(s)	331, 393
VneI	GTGCAC	1 cut(s)	384
XagI	CCTNNNNNAGG	2 cut(s)	98, 200
XapI	RAATTY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	497
XspI	CTAG	2 cut(s)	272, 483
ZrmI	AGTACT	2 cut(s)	70, 481
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.