Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005409

Physical Location & Seq

Genomic Coordinates Forward (+)

23731582 .. 23732605

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTTCCCTCTTCTTTTTCCTCCTCAATAGCATTCTTTGCTGTAATGTCTTTCATGGTTCTAATGAGTATTACTCCCTCCTCTGCTTTTGACATAAACAAGGATATTTGCTCCAACAATAATGTCTTGAGTCGTTCCTTTTGTGAAAAATTTCTTGGTTCTAATCCTGTTGTGAGCAAGTCCTTCCTTCTTGGCCTCGCTGAGGCCACTATAGGTGTTGCATCTTTGAACGCTACAAAGACCAGCCAGCAGATTCCCAAGTGGCGAAACCAAACAGACAACCCTCGAATGAAGAATGCAATTAGTGGATGTCAGAGGCCTTACAGTGAAGCCATTGCTGATCTCAAGGAAGCGAAAGAGAAGGTCAGGTCTGGGGACTATGTTGCACTACAACGTGCAGTAGTTGATGCTGCTGTAAATTTTCATGCATGTGTGAAGCATTCGAGGATATACCACCTGATTCATTGCCATTGTGCGGTACTAGTGGTGACTTGGCTTCTATCTCCAGCATCCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

173

Amino Acids

18.81

Weight (kDa)

9.13

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	34 - 144	3.8e-11	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48020 AT3G17220
fragaria_vesca	FvH4_4g20490 FvH4_4g20520 FvH4_4g20820
malus_domestica	MD16G1147400.v1.1
pyrus_communis	pycom16g12580
rosa_chinensis	RchiOBHm_Chr4g0425971
rosa_laevigata	RLG00000007305 RLG00000007327
rosa_multiflora	Rmu_co8326215.1_g000001 Rmu_sc0000730.1_g000043 Rmu_sc0002091.1_g000005 Rmu_sc0007871.1_g000003 Rmu_ssc0000281.1_g000022
rosa_roxburghii	Rroxscaffold_5G00367980 Rroxscaffold_5G00368310
rosa_rugosa	Rorug04G0209900
rosa_samantha	Rh4AG264700 Rh4AG267000 Rh4BG270600 Rh4BG272900 Rh4CG283200 Rh4CG286700 Rh4CG287000 Rh4DG267200 Rh4DG269500
rosa_wichuraiana	Rw4G022860 Rw4G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	476
AcsI	RAATTY	2 cut(s)	149, 418
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	2 cut(s)	202, 475
AgsI	TTSAA	1 cut(s)	229
AhlI	ACTAGT	1 cut(s)	481
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AoxI	GGCC	3 cut(s)	193, 204, 317
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	2 cut(s)	149, 418
Asp700I	GAANNNNTTC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	499
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	397
BcuI	ACTAGT	1 cut(s)	481
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	230, 397
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	148, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 475
Bse3DI	GCAATG	2 cut(s)	333, 463
BseGI	GGATG	2 cut(s)	314, 509
BseLI	CCNNNNNNNGG	2 cut(s)	202, 475
BseMI	GCAATG	2 cut(s)	333, 463
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	2 cut(s)	13, 70
BseXI	GCAGC	1 cut(s)	397
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	3 cut(s)	195, 206, 319
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	202, 475
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	3 cut(s)	32, 301, 439
BsnI	GGCC	3 cut(s)	195, 206, 319
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	3 cut(s)	195, 206, 319
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	6
BsrDI	GCAATG	2 cut(s)	333, 463
BssMI	GATC	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	314, 509
BstKTI	GATC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	397
BsuRI	GGCC	3 cut(s)	195, 206, 319
BtsCI	GGATG	2 cut(s)	314, 509
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	479
CviAII	CATG	3 cut(s)	55, 425, 429
CviJI	RGCY	6 cut(s)	195, 206, 246, 319, 332, 496
CviKI_1	RGCY	6 cut(s)	195, 206, 246, 319, 332, 496
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	319
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	430
FaeI	CATG	3 cut(s)	58, 428, 432
FaiI	YATR	8 cut(s)	56, 95, 212, 381, 426, 430, 451, 517
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	3 cut(s)	54, 424, 428
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	2 cut(s)	321, 496
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	3 cut(s)	195, 206, 319
Hin1II	CATG	3 cut(s)	58, 428, 432
HinfI	GANTC	3 cut(s)	130, 253, 460
HphI	GGTGA	1 cut(s)	499
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	1 cut(s)	127
HpyAV	CCTTC	3 cut(s)	193, 197, 355
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	5 cut(s)	221, 299, 386, 398, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	3 cut(s)	58, 428, 432
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	6 cut(s)	180, 256, 260, 352, 357, 470
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	2 cut(s)	230, 397
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	2 cut(s)	3, 304
MluCI	AATT	3 cut(s)	149, 300, 418
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	429
Mva1269I	GAATGC	3 cut(s)	32, 301, 439
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	3 cut(s)	58, 428, 432
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	487
NsiI	ATGCAT	1 cut(s)	430
NspI	RCATGY	1 cut(s)	432
PceI	AGGCCT	1 cut(s)	319
PctI	GAATGC	3 cut(s)	32, 301, 439
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	253, 460
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	429
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	139
SetI	ASST	5 cut(s)	217, 366, 371, 397, 459
SfaNI	GCATC	2 cut(s)	230, 397
SfcI	CTRYAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	2 cut(s)	127, 344
SmoI	CTYRAG	2 cut(s)	127, 344
SpeI	ACTAGT	1 cut(s)	481
Sse9I	AATT	3 cut(s)	149, 300, 418
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	1 cut(s)	482
StuI	AGGCCT	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	2 cut(s)	286, 443
TasI	AATT	3 cut(s)	149, 300, 418
TfiI	GAWTC	2 cut(s)	253, 460
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	4 cut(s)	43, 305, 413, 452
TspRI	CASTG	1 cut(s)	331
XagI	CCTNNNNNAGG	1 cut(s)	200
XapI	RAATTY	2 cut(s)	149, 418
XceI	RCATGY	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.