Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007143

Physical Location & Seq

Genomic Coordinates Forward (+)

18246305 .. 18248088

Gene Structure 1784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTTCTACTTTTAGGCTCTCTATTAGCTTCCTCACTCTCATCCTCTTCTCTCTGTGGGTAGTGGAGGCACACACGTCTAGAAAGTTGATATCAATCAAGGAAAAAGAAGGTCAAGATATTAGTCATTTGCTCAAAGATGGTGAATTTGATGACCCTTCGTTGTACATGTATTTCACACTCAATGATCTCAAACTAGGAACCAAATTGCTGATTTACTTCTACAAAAACGATCTTCAAAAGCTTCCTCCACTTCTCACAAGACAACAAGCCGATCTCATTCCTTTCACTAAGTCAAAGCTTGACTTCCTTCTCGACCACTTCTCTATCACCAAAGACTCTCCTCAAGGGAAAGCCATAAAGGAGACTTTGGGACATTGTGATGCTAAAGCTATTGAAGGAGAGCATAAGTTTTGTGGAACTTCTTTGGAGTCATTGATCGATCTTGTGAAGAAAACAATGGGGTATAATGTTGACCTCAAGGTCATGACGACTAAAGTAATGGTACCGGCCCAAAATTCGATAAGCTACGCTTTGCATAACTACACATTCGTCGAGGCTCCAAAGGAACTTGTTGGGATTAAGATGTTGGGATGTCACAGAATGCCTTACCCTTATGCTGTTTACTATTGCCATGGACATAAAGGTGGAAGTAGAGTCTTTGAAGTTAATTTGGTGACGGATGATGGGAGACAACGGGTAGTAGGACCCGCTGTCTGCCACATGGACACATCCACGTGGGACGCGGATCATGTAGCTTTTAAGGTGTTGAAGATGGAGCCGAGGTCAGCACCGGTTTGCCATTTCTTCCCTCTTGATAACATTGTGTGGGTAACAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009791 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

280

Amino Acids

31.81

Weight (kDa)

8.12

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	57 - 278	1.7e-71	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49320
fragaria_vesca	FvH4_2g08510 FvH4_2g08530
malus_domestica	MD05G1068000.v1.1 MD10G1077900.v1.1 MD10G1078000.v1.1
prunus_persica	Prupe.8G098700_v2.0.a1 Prupe.8G098900_v2.0.a1 Prupe.8G099700_v2.0.a1 Prupe.8G099900_v2.0.a1
pyrus_communis	pycom05g05900 pycom10g06110 pycom10g06130 pycom289g00010
rosa_chinensis	RchiOBHm_Chr6g0263891
rosa_laevigata	RLG00000014306
rosa_multiflora	Rmu_sc0002112.1_g000012
rosa_roxburghii	Rroxscaffold_176G00431280 Rroxscaffold_7G00203800
rosa_rugosa	Rorug06G0006700
rosa_samantha	Rh6AG126700 Rh6BG123000 Rh6CG121400 Rh6DG108900
rosa_wichuraiana	Rw6G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	482
Acc65I	GGTACC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	505
AccII	CGCG	1 cut(s)	746
AciI	CCGC	2 cut(s)	711, 746
AclWI	GGATC	1 cut(s)	756
AcsI	RAATTY	2 cut(s)	146, 517
AcvI	CACGTG	1 cut(s)	738
AfaI	GTAC	2 cut(s)	167, 507
AflIII	ACRYGT	2 cut(s)	75, 168
AgeI	ACCGGT	1 cut(s)	793
AgsI	TTSAA	4 cut(s)	239, 398, 665, 772
AhdI	GACNNNNNGTC	1 cut(s)	713
AjiI	CACGTC	1 cut(s)	78
AluBI	AGCT	6 cut(s)	30, 244, 301, 392, 528, 758
AluI	AGCT	6 cut(s)	30, 244, 301, 392, 528, 758
Alw26I	GTCTC	2 cut(s)	359, 685
AlwI	GGATC	1 cut(s)	756
AoxI	GGCC	1 cut(s)	510
ApoI	RAATTY	2 cut(s)	146, 517
AsiGI	ACCGGT	1 cut(s)	793
Asp718I	GGTACC	1 cut(s)	505
AspS9I	GGNCC	2 cut(s)	511, 707
AsuHPI	GGTGA	3 cut(s)	155, 322, 688
AvaII	GGWCC	1 cut(s)	707
BanI	GGYRCC	1 cut(s)	505
BbrPI	CACGTG	1 cut(s)	738
BccI	CCATC	3 cut(s)	134, 680, 769
BcoDI	GTCTC	2 cut(s)	359, 685
BfaI	CTAG	2 cut(s)	81, 197
Bme18I	GGWCC	1 cut(s)	707
BmeRI	GACNNNNNGTC	1 cut(s)	713
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	511, 707
BmiI	GGNNCC	5 cut(s)	202, 507, 561, 709, 780
BmsI	GCATC	1 cut(s)	373
BpuEI	CTTGAG	2 cut(s)	330, 464
Bsa29I	ATCGAT	1 cut(s)	441
BsaAI	YACGTR	1 cut(s)	738
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	634, 782
BsaWI	WCCGGW	1 cut(s)	793
BsaXI	ACNNNNNCTCC	2 cut(s)	770, 800
Bse118I	RCCGGY	2 cut(s)	508, 793
Bse8I	GATNNNNATC	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	634, 782
BseGI	GGATG	4 cut(s)	42, 599, 688, 731
BseJI	GATNNNNATC	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	746
BshFI	GGCC	1 cut(s)	512
BshNI	GGYRCC	1 cut(s)	505
BshTI	ACCGGT	1 cut(s)	793
BshVI	ATCGAT	1 cut(s)	441
BsiSI	CCGG	2 cut(s)	509, 794
BslFI	GGGAC	2 cut(s)	387, 755
BsmAI	GTCTC	2 cut(s)	359, 685
BsmFI	GGGAC	2 cut(s)	387, 755
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	512
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	6 cut(s)	187, 232, 274, 438, 442, 748
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	2 cut(s)	711, 746
BspANI	GGCC	1 cut(s)	512
BspDI	ATCGAT	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	746
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	5 cut(s)	202, 507, 561, 709, 780
BspPI	GGATC	1 cut(s)	756
BspT107I	GGYRCC	1 cut(s)	505
BsrFI	RCCGGY	2 cut(s)	508, 793
BsrGI	TGTACA	1 cut(s)	165
BssAI	RCCGGY	2 cut(s)	508, 793
BssECI	CCNNGG	2 cut(s)	634, 782
BssMI	GATC	6 cut(s)	187, 232, 274, 438, 442, 748
BssT1I	CCWWGG	1 cut(s)	634
Bst6I	CTCTTC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	738
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	4 cut(s)	42, 599, 688, 731
BstFNI	CGCG	1 cut(s)	746
BstKTI	GATC	6 cut(s)	190, 235, 277, 441, 445, 751
BstMAI	GTCTC	2 cut(s)	359, 685
BstMBI	GATC	6 cut(s)	187, 232, 274, 438, 442, 748
BstNSI	RCATGY	1 cut(s)	172
BstUI	CGCG	1 cut(s)	746
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	512
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	634
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	4 cut(s)	42, 599, 688, 731
CciI	TCATGA	1 cut(s)	486
Cfr10I	RCCGGY	2 cut(s)	508, 793
Cfr13I	GGNCC	2 cut(s)	511, 707
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	1 cut(s)	752
Csp6I	GTAC	2 cut(s)	166, 506
CspAI	ACCGGT	1 cut(s)	793
CviAII	CATG	5 cut(s)	169, 487, 635, 724, 752
CviQI	GTAC	2 cut(s)	166, 506
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	6 cut(s)	189, 234, 276, 440, 444, 750
DpnII	GATC	6 cut(s)	187, 232, 274, 438, 442, 748
DrdI	GACNNNNNNGTC	1 cut(s)	482
DriI	GACNNNNNGTC	1 cut(s)	713
DseDI	GACNNNNNNGTC	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	53
Eam1105I	GACNNNNNGTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	634
Eco32I	GATATC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	707
Eco72I	CACGTG	1 cut(s)	738
EcoO109I	RGGNCCY	1 cut(s)	707
EcoRV	GATATC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	5 cut(s)	172, 490, 638, 727, 755
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 517, 549
FaqI	GGGAC	2 cut(s)	387, 755
FatI	CATG	5 cut(s)	168, 486, 634, 723, 751
FauI	CCCGC	1 cut(s)	718
FokI	GGATG	4 cut(s)	29, 606, 695, 718
FspBI	CTAG	2 cut(s)	81, 197
HaeIII	GGCC	1 cut(s)	512
HapII	CCGG	2 cut(s)	509, 794
HgaI	GACGC	1 cut(s)	752
Hin1II	CATG	5 cut(s)	172, 490, 638, 727, 755
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	2 cut(s)	242, 299
HinfI	GANTC	3 cut(s)	338, 431, 657
HpaII	CCGG	2 cut(s)	509, 794
HphI	GGTGA	3 cut(s)	155, 322, 688
Hpy166II	GTNNAC	2 cut(s)	475, 625
Hpy188III	TCNNGA	5 cut(s)	81, 116, 314, 487, 815
Hpy8I	GTNNAC	2 cut(s)	475, 625
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	4 cut(s)	104, 168, 320, 392
HpyCH4IV	ACGT	2 cut(s)	77, 737
HpyCH4V	TGCA	1 cut(s)	538
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	2 cut(s)	77, 737
Hsp92II	CATG	5 cut(s)	172, 490, 638, 727, 755
KpnI	GGTACC	1 cut(s)	509
Kzo9I	GATC	6 cut(s)	187, 232, 274, 438, 442, 748
LmnI	GCTCC	2 cut(s)	565, 778
LpnPI	CCDG	2 cut(s)	522, 807
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	81, 197
MaeII	ACGT	2 cut(s)	77, 737
MaeIII	GTNAC	3 cut(s)	596, 676, 832
MalI	GATC	6 cut(s)	189, 234, 276, 440, 444, 750
MboI	GATC	6 cut(s)	187, 232, 274, 438, 442, 748
MboII	GAAGA	5 cut(s)	40, 227, 463, 784, 799
MluCI	AATT	4 cut(s)	146, 206, 517, 670
MlyI	GAGTC	3 cut(s)	332, 440, 666
MnlI	CCTC	9 cut(s)	44, 56, 61, 258, 354, 488, 550, 777, 822
MseI	TTAA	3 cut(s)	582, 669, 762
MslI	CAYNNNNRTG	3 cut(s)	381, 645, 736
MspA1I	CMGCKG	1 cut(s)	713
MspI	CCGG	2 cut(s)	509, 794
Mva1269I	GAATGC	1 cut(s)	609
MvnI	CGCG	1 cut(s)	746
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	6 cut(s)	187, 232, 274, 438, 442, 748
NlaIII	CATG	5 cut(s)	172, 490, 638, 727, 755
NlaIV	GGNNCC	5 cut(s)	202, 507, 561, 709, 780
NmeAIII	GCCGAG	1 cut(s)	807
NmuCI	GTSAC	2 cut(s)	596, 676
NspI	RCATGY	1 cut(s)	172
PagI	TCATGA	1 cut(s)	486
PciI	ACATGT	1 cut(s)	168
PctI	GAATGC	1 cut(s)	609
PinAI	ACCGGT	1 cut(s)	793
PleI	GAGTC	3 cut(s)	332, 439, 665
PmaCI	CACGTG	1 cut(s)	738
PmlI	CACGTG	1 cut(s)	738
PpsI	GAGTC	3 cut(s)	332, 439, 665
Ppu21I	YACGTR	1 cut(s)	738
PpuMI	RGGWCCY	1 cut(s)	707
PscI	ACATGT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	707
PspCI	CACGTG	1 cut(s)	738
PspN4I	GGNNCC	5 cut(s)	202, 507, 561, 709, 780
PspPI	GGNCC	2 cut(s)	511, 707
PspPPI	RGGWCCY	1 cut(s)	707
RsaI	GTAC	2 cut(s)	167, 507
RsaNI	GTAC	2 cut(s)	166, 506
RseI	CAYNNNNRTG	3 cut(s)	381, 645, 736
SaqAI	TTAA	3 cut(s)	582, 669, 762
Sau3AI	GATC	6 cut(s)	187, 232, 274, 438, 442, 748
Sau96I	GGNCC	2 cut(s)	511, 707
SchI	GAGTC	3 cut(s)	332, 440, 666
SfaNI	GCATC	1 cut(s)	373
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	3 cut(s)	381, 645, 736
SmlI	CTYRAG	2 cut(s)	345, 479
SmoI	CTYRAG	2 cut(s)	345, 479
Sse9I	AATT	4 cut(s)	146, 206, 517, 670
SsiI	CCGC	2 cut(s)	711, 746
SspMI	CTAG	2 cut(s)	81, 197
StyI	CCWWGG	1 cut(s)	634
TaiI	ACGT	2 cut(s)	80, 740
TaqI	TCGA	4 cut(s)	315, 441, 521, 555
TasI	AATT	4 cut(s)	146, 206, 517, 670
TatI	WGTACW	1 cut(s)	165
Tru1I	TTAA	3 cut(s)	582, 669, 762
Tru9I	TTAA	3 cut(s)	582, 669, 762
TseFI	GTSAC	2 cut(s)	596, 676
Tsp45I	GTSAC	2 cut(s)	596, 676
TspGWI	ACGGA	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	707
XapI	RAATTY	2 cut(s)	146, 517
XbaI	TCTAGA	1 cut(s)	80
XceI	RCATGY	1 cut(s)	172
XspI	CTAG	2 cut(s)	81, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.