Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000289

Orthogroup ID

OG0007143

Physical Location & Seq

Genomic Coordinates Reverse (-)

17751 .. 19445

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom289g00010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGAGTTATGCAACCAAAGAAGAAGTCAAGACTCCTTATACAATGAGTTATGCTACCAAAGAAGAAGTCCAGACTCCATACACAATGAGTTATGCAACTAAAGAAAGCAAAAAGGAAGTTAAAACTCCTTACACAATGAGTTATGCAGCCAAAGAAGAAGTTTTGACTCCTTACACAATGAGTTATGCAACTAAAGAAGGCAAAAAGGAAGCTGAAACTCCTTACACAATGAGTTATGCAACCAAAGAAGAAGTCAAGACTCCTTACATAATGAGTTATGCAACTAAGGAAGGCAAAAAGGAAGTTGAGACTCCTTATGCAATGAGTTATGCAACCAAAGGAAGCAAAAAGGCAGTTGAGACTCCTTACGCAATGAATTATGCAACCAAAGAAAGGAAAGAGGAAGTTGAGACTCCTTACACAATGAGTTACGCAACCAAAGAAGCAGGGACTCCTTACATAACGGGTTACAGAACCAAAGAAGCGGAGACTCCTTACACAATGAGTTACGCAACCAAAGAAGCAGAGACTCCTTACATAATGGGTTACAGAACCAAAGAAGCGGAGACTCCTTACACAATGAGTTATGCAACAAAAGAAGGAAAAAAGGAAGTTGAGACTCCTTACAAAATGAGTTATGGAACAGAAGAAGTTGAGCCTTCTCATGAGCATGTTCATATTCATATGCATCCACAATCTCAACCTCACATGGATCACAATGAAGCATCCAAGCAAGGATTTTTCACGTTCGATGATTTACACTGCGGTATGAGAATGCCTCTCCACTTTCCCAACCAAGAACATTCTCGTTTCCTGCCTAAAGAAGTAGCTGATTCCATCCCATTCTCAACACCACATATCCCACAAATTCGTCAACTCTTCTCAATCCCACAAGGTTCTCAAGAAGCGAAGAATGTCGCATATGCACTTGAACAATGTGAGATGAAACCCATCAAGAATGTCGCATATGCACTTGAACATTCTCGTTCATCATCTCACATGGATCACATGGACCCTGCCCTAAATGTTTTCTTCACCCCAAAAGATCTCAAACGAGGAAAAAAAATGCCCATATACTTCTCAAAAAATAACTCTTCCACATCTCCAAGACTTTTGGCCAGAGAAGAAGCTGATTCCATTCCTTCCTCAATCTCAAACCTCCCATACCTTCTTCAACTCTTCTCTTTCCCCCAAGACTCTACCCAAGCCAAAGCCGTGGAATACACACTAACCCAACGTGACCTTCAACCCATCAAAGGAGAGGCCAAATTTTGTGCTACCTCATTAGAATCCATGCTTGATTTTGTAGCTGCCCTCTTTGGACAAAATACCCGATTCAAAGTCTTAACCACTATTCAGCTCAAGAACTCAACTACCCTTTTGCAAAATTACACGTTTTCGGAAGCTCCCAAAGAGATCTGGGCTCCTAAAATGATTGCTTGCCACACCATGCCTTACCCTTATGCAGTTTTCTACTGCCATAGCCAGGAGAGTGAGAACAGGTTGTATCAGGGTTTGCTTGCTGGGGAGAATGGAGAGAAAGTTGAAGCTGCTGCCGTTTGTCACTTTGATACTTCTCAGTGGGATCCTGATCATGTGGCGTTCAGTGTGCTTGGTACTCAACCTGGAAGCTCCCCGGTCTGCCATTTCTTTCCTTCTGATAATCTAGTTTGGGTGCCATTGCCAGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009791 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

565

Amino Acids

64.13

Weight (kDa)

6.13

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	247 - 320	1e-15	BURP domain
BURP	PF03181	343 - 560	1.2e-75	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49320
fragaria_vesca	FvH4_2g08510 FvH4_2g08530
malus_domestica	MD05G1068000.v1.1 MD10G1077900.v1.1 MD10G1078000.v1.1
prunus_persica	Prupe.8G098700_v2.0.a1 Prupe.8G098900_v2.0.a1 Prupe.8G099700_v2.0.a1 Prupe.8G099900_v2.0.a1
pyrus_communis	pycom05g05900 pycom10g06110 pycom10g06130 pycom289g00010
rosa_chinensis	RchiOBHm_Chr6g0263891
rosa_laevigata	RLG00000014306
rosa_multiflora	Rmu_sc0002112.1_g000012
rosa_roxburghii	Rroxscaffold_176G00431280 Rroxscaffold_7G00203800
rosa_rugosa	Rorug06G0006700
rosa_samantha	Rh6AG126700 Rh6BG123000 Rh6CG121400 Rh6DG108900
rosa_wichuraiana	Rw6G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1675
AciI	CCGC	3 cut(s)	485, 563, 765
AclWI	GGATC	4 cut(s)	720, 1011, 1580, 1593
AcoI	YGGCCR	1 cut(s)	1116
AcsI	RAATTY	2 cut(s)	867, 1268
AfaI	GTAC	1 cut(s)	1618
AfiI	CCNNNNNNNGG	3 cut(s)	393, 1256, 1486
AflIII	ACRYGT	1 cut(s)	1392
AgsI	TTSAA	6 cut(s)	932, 977, 1175, 1247, 1339, 1547
AjnI	CCWGG	2 cut(s)	1485, 1624
AjuI	GAANNNNNNNTTGG	2 cut(s)	1227, 1259
AluBI	AGCT	9 cut(s)	212, 830, 1130, 1310, 1360, 1406, 1550, 1632, 1688
AluI	AGCT	9 cut(s)	212, 830, 1130, 1310, 1360, 1406, 1550, 1632, 1688
Alw26I	GTCTC	7 cut(s)	302, 353, 404, 482, 521, 560, 611
AlwI	GGATC	4 cut(s)	720, 1011, 1580, 1593
AoxI	GGCC	2 cut(s)	1116, 1263
ApeKI	GCWGC	4 cut(s)	146, 1310, 1550, 1553
ApoI	RAATTY	2 cut(s)	867, 1268
ArsI	GACNNNNNNTTYG	6 cut(s)	9, 41, 51, 83, 237, 269
AspS9I	GGNCC	1 cut(s)	1012
AsuC2I	CCSGG	1 cut(s)	1637
AsuHPI	GGTGA	1 cut(s)	1027
AvaII	GGWCC	1 cut(s)	1012
BalI	TGGCCA	1 cut(s)	1118
BamHI	GGATCC	1 cut(s)	1585
BanI	GGYRCC	1 cut(s)	1675
BanII	GRGCYC	1 cut(s)	1426
BbvI	GCAGC	4 cut(s)	158, 1297, 1537, 1540
BccI	CCATC	3 cut(s)	845, 959, 1259
BceAI	ACGGC	2 cut(s)	1199, 1541
BciT130I	CCWGG	2 cut(s)	1487, 1626
BclI	TGATCA	1 cut(s)	1591
BcnI	CCSGG	1 cut(s)	1637
BcoDI	GTCTC	7 cut(s)	302, 353, 404, 482, 521, 560, 611
BfaI	CTAG	1 cut(s)	1667
BglII	AGATCT	2 cut(s)	1045, 1416
BisI	GCNGC	4 cut(s)	147, 1311, 1551, 1554
BlsI	GCNGC	4 cut(s)	148, 1312, 1552, 1555
Bme1390I	CCNGG	3 cut(s)	1487, 1626, 1637
Bme18I	GGWCC	1 cut(s)	1012
BmgT120I	GGNCC	1 cut(s)	1012
BmiI	GGNNCC	4 cut(s)	1014, 1425, 1587, 1677
BmrFI	CCNGG	3 cut(s)	1487, 1626, 1637
BmsI	GCATC	2 cut(s)	697, 734
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpuEI	CTTGAG	2 cut(s)	885, 1346
BpuMI	CCSGG	1 cut(s)	1637
BsaBI	GATNNNNATC	1 cut(s)	1590
BsaJI	CCNNGG	2 cut(s)	1215, 1635
BsaXI	ACNNNNNCTCC	2 cut(s)	1527, 1557
Bsc4I	CCNNNNNNNGG	3 cut(s)	393, 1256, 1486
Bse3DI	GCAATG	3 cut(s)	327, 378, 1679
Bse8I	GATNNNNATC	1 cut(s)	1590
BseBI	CCWGG	2 cut(s)	1487, 1626
BseDI	CCNNGG	2 cut(s)	1215, 1635
BseGI	GGATG	3 cut(s)	688, 725, 837
BseJI	GATNNNNATC	1 cut(s)	1590
BseLI	CCNNNNNNNGG	3 cut(s)	393, 1256, 1486
BseMI	GCAATG	3 cut(s)	327, 378, 1679
BseMII	CTCAG	1 cut(s)	1592
BseXI	GCAGC	4 cut(s)	158, 1297, 1537, 1540
BseYI	CCCAGC	1 cut(s)	1523
BshFI	GGCC	2 cut(s)	1118, 1265
BshNI	GGYRCC	1 cut(s)	1675
BsiSI	CCGG	1 cut(s)	1637
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	3 cut(s)	393, 1256, 1486
BsmAI	GTCTC	7 cut(s)	302, 353, 404, 482, 521, 560, 611
BsmFI	GGGAC	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	780
BsnI	GGCC	2 cut(s)	1118, 1265
Bsp1286I	GDGCHC	1 cut(s)	1426
Bsp143I	GATC	6 cut(s)	712, 1003, 1045, 1416, 1585, 1591
BspACI	CCGC	3 cut(s)	485, 563, 765
BspANI	GGCC	2 cut(s)	1118, 1265
BspCNI	CTCAG	1 cut(s)	1591
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	4 cut(s)	1014, 1425, 1587, 1677
BspPI	GGATC	4 cut(s)	720, 1011, 1580, 1593
BspT107I	GGYRCC	1 cut(s)	1675
BsrDI	GCAATG	3 cut(s)	327, 378, 1679
BssECI	CCNNGG	2 cut(s)	1215, 1635
BssMI	GATC	6 cut(s)	712, 1003, 1045, 1416, 1585, 1591
Bst2UI	CCWGG	2 cut(s)	1487, 1626
Bst6I	CTCTTC	3 cut(s)	884, 1099, 1184
BstC8I	GCNNGC	3 cut(s)	1441, 1521, 1686
BstDEI	CTNAG	2 cut(s)	285, 1578
BstDSI	CCRYGG	1 cut(s)	1215
BstF5I	GGATG	3 cut(s)	688, 725, 837
BstKTI	GATC	6 cut(s)	715, 1006, 1048, 1419, 1588, 1594
BstMAI	GTCTC	7 cut(s)	302, 353, 404, 482, 521, 560, 611
BstMBI	GATC	6 cut(s)	712, 1003, 1045, 1416, 1585, 1591
BstNI	CCWGG	2 cut(s)	1487, 1626
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	3 cut(s)	1485, 1624, 1635
BstV1I	GCAGC	4 cut(s)	158, 1297, 1537, 1540
BstX2I	RGATCY	3 cut(s)	1045, 1416, 1585
BstXI	CCANNNNNNTGG	1 cut(s)	1216
BstYI	RGATCY	3 cut(s)	1045, 1416, 1585
BsuRI	GGCC	2 cut(s)	1118, 1265
BtgI	CCRYGG	1 cut(s)	1215
BtsCI	GGATG	3 cut(s)	688, 725, 837
BtsI	GCAGTG	1 cut(s)	760
BtsIMutI	CAGTG	3 cut(s)	760, 1586, 1612
Cac8I	GCNNGC	3 cut(s)	1441, 1521, 1686
CciI	TCATGA	1 cut(s)	664
Cfr13I	GGNCC	1 cut(s)	1012
Csp6I	GTAC	1 cut(s)	1617
CviAII	CATG	8 cut(s)	665, 671, 709, 1000, 1009, 1294, 1450, 1595
CviQI	GTAC	1 cut(s)	1617
DdeI	CTNAG	2 cut(s)	285, 1578
DpnI	GATC	6 cut(s)	714, 1005, 1047, 1418, 1587, 1593
DpnII	GATC	6 cut(s)	712, 1003, 1045, 1416, 1585, 1591
EaeI	YGGCCR	1 cut(s)	1116
Eam1104I	CTCTTC	3 cut(s)	884, 1099, 1184
EarI	CTCTTC	3 cut(s)	884, 1099, 1184
Eco24I	GRGCYC	1 cut(s)	1426
Eco47I	GGWCC	1 cut(s)	1012
EcoRII	CCWGG	2 cut(s)	1485, 1624
EcoT22I	ATGCAT	1 cut(s)	690
EcoT38I	GRGCYC	1 cut(s)	1426
FaeI	CATG	8 cut(s)	668, 674, 712, 1003, 1012, 1297, 1453, 1598
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	8 cut(s)	664, 670, 708, 999, 1008, 1293, 1449, 1594
FauNDI	CATATG	3 cut(s)	684, 922, 967
FbaI	TGATCA	1 cut(s)	1591
Fnu4HI	GCNGC	4 cut(s)	147, 1311, 1551, 1554
FokI	GGATG	3 cut(s)	675, 712, 824
FriOI	GRGCYC	1 cut(s)	1426
Fsp4HI	GCNGC	4 cut(s)	147, 1311, 1551, 1554
FspBI	CTAG	1 cut(s)	1667
GluI	GCNGC	4 cut(s)	147, 1311, 1551, 1554
GsaI	CCCAGC	1 cut(s)	1527
HaeIII	GGCC	2 cut(s)	1118, 1265
HapII	CCGG	1 cut(s)	1637
Hin1II	CATG	8 cut(s)	668, 674, 712, 1003, 1012, 1297, 1453, 1598
HincII	GTYRAC	1 cut(s)	875
HindII	GTYRAC	1 cut(s)	875
HpaII	CCGG	1 cut(s)	1637
HphI	GGTGA	1 cut(s)	1027
Hpy166II	GTNNAC	1 cut(s)	875
Hpy188I	TCNGA	2 cut(s)	1402, 1660
Hpy188III	TCNNGA	8 cut(s)	28, 70, 256, 665, 902, 955, 1363, 1589
Hpy8I	GTNNAC	1 cut(s)	875
HpyAV	CCTTC	8 cut(s)	191, 284, 593, 669, 1152, 1178, 1253, 1665
HpyCH4IV	ACGT	3 cut(s)	746, 1237, 1394
HpyF3I	CTNAG	2 cut(s)	285, 1578
HpySE526I	ACGT	3 cut(s)	746, 1237, 1394
Hsp92II	CATG	8 cut(s)	668, 674, 712, 1003, 1012, 1297, 1453, 1598
Ksp22I	TGATCA	1 cut(s)	1591
Kzo9I	GATC	6 cut(s)	712, 1003, 1045, 1416, 1585, 1591
LmnI	GCTCC	3 cut(s)	1411, 1429, 1637
Lsp1109I	GCAGC	4 cut(s)	158, 1297, 1537, 1540
LweI	GCATC	2 cut(s)	697, 734
MaeI	CTAG	1 cut(s)	1667
MaeII	ACGT	3 cut(s)	746, 1237, 1394
MaeIII	GTNAC	6 cut(s)	428, 467, 506, 545, 1238, 1562
MalI	GATC	6 cut(s)	714, 1005, 1047, 1418, 1587, 1593
MboI	GATC	6 cut(s)	712, 1003, 1045, 1416, 1585, 1591
MflI	RGATCY	3 cut(s)	1045, 1416, 1585
MhlI	GDGCHC	1 cut(s)	1426
MlsI	TGGCCA	1 cut(s)	1118
MluCI	AATT	4 cut(s)	376, 867, 1268, 1387
MluNI	TGGCCA	1 cut(s)	1118
MnlI	CCTC	9 cut(s)	394, 714, 789, 1049, 1156, 1169, 1255, 1291, 1325
Mox20I	TGGCCA	1 cut(s)	1118
Mph1103I	ATGCAT	1 cut(s)	690
MscI	TGGCCA	1 cut(s)	1118
MseI	TTAA	2 cut(s)	120, 1346
MslI	CAYNNNNRTG	1 cut(s)	669
Msp20I	TGGCCA	1 cut(s)	1118
MspI	CCGG	1 cut(s)	1637
MspR9I	CCNGG	3 cut(s)	1487, 1626, 1637
Mva1269I	GAATGC	1 cut(s)	780
MvaI	CCWGG	2 cut(s)	1487, 1626
NciI	CCSGG	1 cut(s)	1637
NdeI	CATATG	3 cut(s)	684, 922, 967
NdeII	GATC	6 cut(s)	712, 1003, 1045, 1416, 1585, 1591
NlaIII	CATG	8 cut(s)	668, 674, 712, 1003, 1012, 1297, 1453, 1598
NlaIV	GGNNCC	4 cut(s)	1014, 1425, 1587, 1677
NmuCI	GTSAC	2 cut(s)	1238, 1562
NsiI	ATGCAT	1 cut(s)	690
NspI	RCATGY	1 cut(s)	674
PagI	TCATGA	1 cut(s)	664
PctI	GAATGC	1 cut(s)	780
PfeI	GAWTC	4 cut(s)	833, 1133, 1289, 1335
PkrI	GCNGC	4 cut(s)	148, 1312, 1552, 1555
Psp6I	CCWGG	2 cut(s)	1485, 1624
PspFI	CCCAGC	1 cut(s)	1523
PspGI	CCWGG	2 cut(s)	1485, 1624
PspN4I	GGNNCC	4 cut(s)	1014, 1425, 1587, 1677
PspPI	GGNCC	1 cut(s)	1012
PsuI	RGATCY	3 cut(s)	1045, 1416, 1585
RsaI	GTAC	1 cut(s)	1618
RsaNI	GTAC	1 cut(s)	1617
RseI	CAYNNNNRTG	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	120, 1346
SatI	GCNGC	4 cut(s)	147, 1311, 1551, 1554
Sau3AI	GATC	6 cut(s)	712, 1003, 1045, 1416, 1585, 1591
Sau96I	GGNCC	1 cut(s)	1012
ScrFI	CCNGG	3 cut(s)	1487, 1626, 1637
SduI	GDGCHC	1 cut(s)	1426
SfaNI	GCATC	2 cut(s)	697, 734
SinI	GGWCC	1 cut(s)	1012
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	2 cut(s)	900, 1361
SmoI	CTYRAG	2 cut(s)	900, 1361
Sse9I	AATT	4 cut(s)	376, 867, 1268, 1387
SsiI	CCGC	3 cut(s)	485, 563, 765
SspMI	CTAG	1 cut(s)	1667
StyD4I	CCNGG	3 cut(s)	1485, 1624, 1635
TaiI	ACGT	3 cut(s)	749, 1240, 1397
TaqI	TCGA	1 cut(s)	750
TasI	AATT	4 cut(s)	376, 867, 1268, 1387
TfiI	GAWTC	4 cut(s)	833, 1133, 1289, 1335
Tru1I	TTAA	2 cut(s)	120, 1346
Tru9I	TTAA	2 cut(s)	120, 1346
TscAI	CASTG	3 cut(s)	767, 1586, 1612
TseFI	GTSAC	2 cut(s)	1238, 1562
TseI	GCWGC	4 cut(s)	146, 1310, 1550, 1553
Tsp45I	GTSAC	2 cut(s)	1238, 1562
TspDTI	ATGAA	6 cut(s)	389, 665, 671, 735, 959, 978
TspRI	CASTG	3 cut(s)	767, 1586, 1612
VpaK11BI	GGWCC	1 cut(s)	1012
XapI	RAATTY	2 cut(s)	867, 1268
XceI	RCATGY	1 cut(s)	674
XspI	CTAG	1 cut(s)	1667
Zsp2I	ATGCAT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.