Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007143

Physical Location & Seq

Genomic Coordinates Forward (+)

13056298 .. 13057518

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G098900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAACAAAATGGCAAGGACTTTTAACAAGGGAAGAAACATGGCTTCAGGACTTGCTCTCTGGAGCCGCTTACTTCATCTACTTGTGCTTGTTATGTGTGTTCAAGGAACTGGAGGCAGGAAGATGAGTGAAACACAAGATGGTGATGGCCATGAAACAACACATACAGAGCATGCTCGTGCTCATCATCCATCATCCCACATACATCATCACATGGACCCTTCATTTATGATTTTCTTTACCTTGGAGGACCTAAAGGAGGGCAAAACCATGGCCATCTATTTTCCCAAAAGAAACCCTTCAAAATCTCCGCACTTGTTACCAAGAGAAGAAGCTGATCAAATTCCTTTCTCATCAAAACATCTCCTCCACCTCCTTCACTTCTTCTCCTTCTCTCAAGACTCTCCCCAAGCCAAGGCCATGGAAGACACTCTCAGGCAGTGTGAGATTGAACCCATCAAGGGAGAGATCAAGTCCTGTTCTACATCCCTAGAATCCATGCTCGACTTCACACGTGGTGTCTTCAGATTGGACACCCCCTTCAGTGTTGTGGCCACAACCCATCTCACAAATTCAACTACCAATTTCCAGAACTACACTATTTTGGAAGAGCCCAAGGAGATTTTGGCTCCCAAGATGGTGGCTTGCCACACCATGCCTTACCCTTACGCAGTTTTCTACTGCCACAGCCAGAAAAGTGTGAACAAGGTTTTCAAGGTTTTGTTGGGTGGTGAGGATGGAGATAGGGTAGAAGCTGTTGCTGTTTGTCACTTGGACACCTCTCAATGGAGCCCTAATCATGCATCTTCAGTGTGCTTAGGACTAAGCCAGGGGCTTCTGCTGTGTGTCATTTCTTTCCTGCTGATAATCTTGTGTGGGTTCCAGCATCCACTTCAATGTAGTAATTTTAATGCAGGGCCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

309

Amino Acids

34.52

Weight (kDa)

6.84

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49320
fragaria_vesca	FvH4_2g08510 FvH4_2g08530
malus_domestica	MD05G1068000.v1.1 MD10G1077900.v1.1 MD10G1078000.v1.1
prunus_persica	Prupe.8G098700_v2.0.a1 Prupe.8G098900_v2.0.a1 Prupe.8G099700_v2.0.a1 Prupe.8G099900_v2.0.a1
pyrus_communis	pycom05g05900 pycom10g06110 pycom10g06130 pycom289g00010
rosa_chinensis	RchiOBHm_Chr6g0263891
rosa_laevigata	RLG00000014306
rosa_multiflora	Rmu_sc0002112.1_g000012
rosa_roxburghii	Rroxscaffold_176G00431280 Rroxscaffold_7G00203800
rosa_rugosa	Rorug06G0006700
rosa_samantha	Rh6AG126700 Rh6BG123000 Rh6CG121400 Rh6DG108900
rosa_wichuraiana	Rw6G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	67, 311
AcoI	YGGCCR	3 cut(s)	148, 273, 552
AcsI	RAATTY	2 cut(s)	342, 571
AcuI	CTGAAG	4 cut(s)	30, 508, 526, 792
AcvI	CACGTG	1 cut(s)	515
AdeI	CACNNNGTG	1 cut(s)	518
AfiI	CCNNNNNNNGG	4 cut(s)	259, 415, 461, 786
AflIII	ACRYGT	1 cut(s)	512
AgsI	TTSAA	6 cut(s)	104, 303, 452, 576, 715, 896
AjnI	CCWGG	1 cut(s)	828
AluBI	AGCT	2 cut(s)	335, 755
AluI	AGCT	2 cut(s)	335, 755
Alw21I	GWGCWC	1 cut(s)	184
AoxI	GGCC	5 cut(s)	148, 273, 417, 552, 917
ApoI	RAATTY	2 cut(s)	342, 571
Asp700I	GAANNNNTTC	1 cut(s)	298
AspS9I	GGNCC	3 cut(s)	217, 250, 917
AsuHPI	GGTGA	2 cut(s)	155, 743
AvaII	GGWCC	2 cut(s)	217, 250
BalI	TGGCCA	3 cut(s)	150, 275, 554
BanII	GRGCYC	2 cut(s)	615, 794
BauI	CACGAG	1 cut(s)	177
BbrPI	CACGTG	1 cut(s)	515
BbsI	GAAGAC	2 cut(s)	432, 514
Bbv12I	GWGCWC	1 cut(s)	184
BccI	CCATC	8 cut(s)	134, 140, 199, 284, 464, 570, 631, 731
BciT130I	CCWGG	1 cut(s)	830
BclI	TGATCA	1 cut(s)	337
BfaI	CTAG	1 cut(s)	491
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	830
Bme18I	GGWCC	2 cut(s)	217, 250
BmgT120I	GGNCC	3 cut(s)	217, 250, 917
BmiI	GGNNCC	5 cut(s)	65, 219, 630, 791, 881
BmrFI	CCNGG	1 cut(s)	830
BmsI	GCATC	2 cut(s)	812, 895
BpiI	GAAGAC	2 cut(s)	432, 514
BpmI	CTGGAG	2 cut(s)	82, 132
Bpu10I	CCTNAGC	1 cut(s)	817
BpuEI	CTTGAG	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	515
BsaJI	CCNNGG	6 cut(s)	243, 270, 414, 420, 615, 829
BsaXI	ACNNNNNCTCC	6 cut(s)	351, 371, 381, 401, 732, 762
Bsc4I	CCNNNNNNNGG	4 cut(s)	259, 415, 461, 786
Bse1I	ACTGG	2 cut(s)	115, 920
BseBI	CCWGG	1 cut(s)	830
BseDI	CCNNGG	6 cut(s)	243, 270, 414, 420, 615, 829
BseGI	GGATG	5 cut(s)	187, 194, 485, 742, 886
BseLI	CCNNNNNNNGG	4 cut(s)	259, 415, 461, 786
BseMII	CTCAG	1 cut(s)	448
BseNI	ACTGG	2 cut(s)	115, 920
BseRI	GAGGAG	1 cut(s)	356
BshFI	GGCC	5 cut(s)	150, 275, 419, 554, 919
BsiHKAI	GWGCWC	1 cut(s)	184
BslI	CCNNNNNNNGG	4 cut(s)	259, 415, 461, 786
BsnI	GGCC	5 cut(s)	150, 275, 419, 554, 919
Bsp1286I	GDGCHC	3 cut(s)	184, 615, 794
Bsp143I	GATC	2 cut(s)	337, 468
Bsp19I	CCATGG	2 cut(s)	270, 420
BspACI	CCGC	2 cut(s)	67, 311
BspANI	GGCC	5 cut(s)	150, 275, 419, 554, 919
BspCNI	CTCAG	1 cut(s)	447
BspLI	GGNNCC	5 cut(s)	65, 219, 630, 791, 881
BspQI	GCTCTTC	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	115, 920
BssECI	CCNNGG	6 cut(s)	243, 270, 414, 420, 615, 829
BssMI	GATC	2 cut(s)	337, 468
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	5 cut(s)	243, 270, 414, 420, 615
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	830
Bst6I	CTCTTC	1 cut(s)	603
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	174, 646
BstDEI	CTNAG	3 cut(s)	434, 817, 824
BstDSI	CCRYGG	2 cut(s)	270, 420
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	5 cut(s)	187, 194, 485, 742, 886
BstKTI	GATC	2 cut(s)	340, 471
BstMBI	GATC	2 cut(s)	337, 468
BstNI	CCWGG	1 cut(s)	830
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	828
BstV2I	GAAGAC	2 cut(s)	432, 514
BstXI	CCANNNNNNTGG	2 cut(s)	421, 640
BsuRI	GGCC	5 cut(s)	150, 275, 419, 554, 919
BtgI	CCRYGG	2 cut(s)	270, 420
BtsCI	GGATG	5 cut(s)	187, 194, 485, 742, 886
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	3 cut(s)	446, 550, 816
Cac8I	GCNNGC	2 cut(s)	174, 646
Cfr13I	GGNCC	3 cut(s)	217, 250, 917
CviAII	CATG	9 cut(s)	40, 152, 173, 214, 271, 421, 499, 655, 800
DdeI	CTNAG	3 cut(s)	434, 817, 824
DpnI	GATC	2 cut(s)	339, 470
DpnII	GATC	2 cut(s)	337, 468
DraIII	CACNNNGTG	1 cut(s)	518
EaeI	YGGCCR	3 cut(s)	148, 273, 552
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco130I	CCWWGG	5 cut(s)	243, 270, 414, 420, 615
Eco24I	GRGCYC	2 cut(s)	615, 794
Eco47I	GGWCC	2 cut(s)	217, 250
Eco57I	CTGAAG	4 cut(s)	30, 508, 526, 792
Eco72I	CACGTG	1 cut(s)	515
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	828
EcoT14I	CCWWGG	5 cut(s)	243, 270, 414, 420, 615
EcoT22I	ATGCAT	1 cut(s)	805
EcoT38I	GRGCYC	2 cut(s)	615, 794
ErhI	CCWWGG	5 cut(s)	243, 270, 414, 420, 615
FaeI	CATG	9 cut(s)	43, 155, 176, 217, 274, 424, 502, 658, 803
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FatI	CATG	9 cut(s)	39, 151, 172, 213, 270, 420, 498, 654, 799
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	5 cut(s)	174, 181, 472, 749, 873
FriOI	GRGCYC	2 cut(s)	615, 794
Fsp4HI	GCNGC	1 cut(s)	67
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	1 cut(s)	67
GsuI	CTGGAG	2 cut(s)	82, 132
HaeIII	GGCC	5 cut(s)	150, 275, 419, 554, 919
Hin1II	CATG	9 cut(s)	43, 155, 176, 217, 274, 424, 502, 658, 803
HinfI	GANTC	2 cut(s)	401, 494
HphI	GGTGA	2 cut(s)	155, 743
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	1 cut(s)	527
Hpy188III	TCNNGA	4 cut(s)	48, 61, 398, 589
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	5 cut(s)	231, 309, 386, 400, 550
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	2 cut(s)	803, 914
HpyF3I	CTNAG	3 cut(s)	434, 817, 824
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	9 cut(s)	43, 155, 176, 217, 274, 424, 502, 658, 803
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	337, 468
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	3 cut(s)	63, 634, 789
LweI	GCATC	2 cut(s)	812, 895
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	318, 767
MalI	GATC	2 cut(s)	339, 470
MboI	GATC	2 cut(s)	337, 468
MboII	GAAGA	8 cut(s)	45, 133, 341, 376, 437, 514, 620, 798
MhlI	GDGCHC	3 cut(s)	184, 615, 794
MlsI	TGGCCA	3 cut(s)	150, 275, 554
MluCI	AATT	4 cut(s)	342, 571, 583, 904
MluNI	TGGCCA	3 cut(s)	150, 275, 554
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	7 cut(s)	107, 241, 253, 377, 383, 727, 790
Mox20I	TGGCCA	3 cut(s)	150, 275, 554
Mph1103I	ATGCAT	1 cut(s)	805
MroXI	GAANNNNTTC	1 cut(s)	298
MscI	TGGCCA	3 cut(s)	150, 275, 554
MseI	TTAA	2 cut(s)	24, 909
MslI	CAYNNNNRTG	2 cut(s)	177, 895
Msp20I	TGGCCA	3 cut(s)	150, 275, 554
MspR9I	CCNGG	1 cut(s)	830
MvaI	CCWGG	1 cut(s)	830
NcoI	CCATGG	2 cut(s)	270, 420
NdeII	GATC	2 cut(s)	337, 468
NlaIII	CATG	9 cut(s)	43, 155, 176, 217, 274, 424, 502, 658, 803
NlaIV	GGNNCC	5 cut(s)	65, 219, 630, 791, 881
NmuCI	GTSAC	1 cut(s)	767
NsiI	ATGCAT	1 cut(s)	805
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	494
PkrI	GCNGC	1 cut(s)	68
PleI	GAGTC	1 cut(s)	395
PmaCI	CACGTG	1 cut(s)	515
PmlI	CACGTG	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	395
Ppu21I	YACGTR	1 cut(s)	515
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	828
PspCI	CACGTG	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	828
PspN4I	GGNNCC	5 cut(s)	65, 219, 630, 791, 881
PspPI	GGNCC	3 cut(s)	217, 250, 917
PspPPI	RGGWCCY	1 cut(s)	250
RseI	CAYNNNNRTG	2 cut(s)	177, 895
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	24, 909
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	2 cut(s)	337, 468
Sau96I	GGNCC	3 cut(s)	217, 250, 917
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	830
SduI	GDGCHC	3 cut(s)	184, 615, 794
SetI	ASST	9 cut(s)	245, 255, 337, 375, 517, 711, 720, 757, 782
SfaNI	GCATC	2 cut(s)	812, 895
SinI	GGWCC	2 cut(s)	217, 250
SmiMI	CAYNNNNRTG	2 cut(s)	177, 895
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	4 cut(s)	342, 571, 583, 904
SsiI	CCGC	2 cut(s)	67, 311
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	1 cut(s)	828
StyI	CCWWGG	5 cut(s)	243, 270, 414, 420, 615
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	1 cut(s)	504
TasI	AATT	4 cut(s)	342, 571, 583, 904
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	2 cut(s)	24, 909
Tru9I	TTAA	2 cut(s)	24, 909
TscAI	CASTG	3 cut(s)	446, 550, 816
TseFI	GTSAC	1 cut(s)	767
Tsp45I	GTSAC	1 cut(s)	767
TspDTI	ATGAA	4 cut(s)	17, 65, 168, 213
TspRI	CASTG	3 cut(s)	446, 550, 816
VpaK11BI	GGWCC	2 cut(s)	217, 250
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	2 cut(s)	342, 571
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	298
XspI	CTAG	1 cut(s)	491
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.